View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14921_low_7 (Length: 202)
Name: NF14921_low_7
Description: NF14921
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14921_low_7 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 96; Significance: 3e-47; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 45204341 - 45204242
Alignment:
| Q |
87 |
catcattcaaacctatggcctaatccattcaaaccaaattgtgactagctcacggtttggctctcaactatccatcacaattcagttcctttcacccagt |
186 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
45204341 |
catcattcaaacctatggcctaatccattcaaaccaaattgtgactagctcacggtttggctctcaactatccatcacaattcagttcttttcacccagt |
45204242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 45204381 - 45204332
Alignment:
| Q |
16 |
aaaagcaagccaaagtaaattcaagaactccaaaataaagcatcattcaa |
65 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45204381 |
aaaagcaagccaaagtaaattcaagaactccaaaataaagcatcattcaa |
45204332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University