View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14922_high_1 (Length: 533)
Name: NF14922_high_1
Description: NF14922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14922_high_1 |
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Alignment Details
Target: chr6 (Bit Score: 381; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 1 - 516
Target Start/End: Complemental strand, 33205789 - 33205279
Alignment:
| Q |
1 |
ggcatcaattgtaattttgtggcagtcagaaaaactcaaaaaacttgatgtcaatcaacggttgaaatcgtggtggcaaatttctttaaacctcttgatt |
100 |
Q |
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| T |
33205789 |
ggcatcaattgcaattttgtggcagtcacaaaaactcaaaaaacttgatgtcgatcaacggttgaaatcgtggtggtaaatttctttaaacctcttgatt |
33205690 |
T |
|
| Q |
101 |
ataaataaattattcttgtagtgacggttggccttctaatttcatactaccaaggttgaaagtcacagttttttagtgcaaaatccaggcataccactac |
200 |
Q |
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||||||||||||||||| |||||||||||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33205689 |
ataaataaattattcttatagtgacggttggccttcgaatttcatattatcaaggttgaaagtcacagttttttagtgcaaaatccaggcataccactac |
33205590 |
T |
|
| Q |
201 |
ccatcttgtctatagtttgtgcacattgcaataccaattcttaccnnnnnnnnnnctttccctttcacgggaaagtctctattcaaacgtgcatgcaaaa |
300 |
Q |
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| T |
33205589 |
ccatcttgtctctagtttgtgcacattgcaataccaattcttaccttttttttt--tttccctttcacgggaaag--tctattcaaacgtgcatgcaaaa |
33205494 |
T |
|
| Q |
301 |
ccaattggattcaaacttgtcatctagtagtactatgtagtggatactgcnnnnnnngcctgcagaaattttgatgcattccaacttgcattgcaactat |
400 |
Q |
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||||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| || |
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| T |
33205493 |
ccaattggattcaaagttgtcatctggtagtactatgtagtggatactgc-aaaaaagcctgcagaaattttgatgcattccaacttgcattgcaaccat |
33205395 |
T |
|
| Q |
401 |
caacaaagggaccctgcatgaattattgggacctcgattcttggcatttcgaaatacatgcatctattcacattaattgatctccactattgaattgaaa |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |
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| T |
33205394 |
caacaaagggaccctgcatgaattattgggacctcgattcttggcatttcgaaatacatgtatctattcacattaattgatctcgactattgaattgaaa |
33205295 |
T |
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| Q |
501 |
taagacgactcaagta |
516 |
Q |
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| T |
33205294 |
tcagacgactcaagta |
33205279 |
T |
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