View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14922_high_11 (Length: 328)
Name: NF14922_high_11
Description: NF14922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14922_high_11 |
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Alignment Details
Target: chr5 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 310
Target Start/End: Complemental strand, 493817 - 493512
Alignment:
| Q |
1 |
gctgcaaggtttgaaatggctctgccaaatacaccatattggtggggtttaaccattggtggcctaattagcaccggtgcacatggaagtacattgtggg |
100 |
Q |
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| T |
493817 |
gctgcaaggtttgaaatggctctgccaaatacaccatattggtggggtttaaccattggtggcctaattagcactggtgcacatggaagtacattgtggg |
493718 |
T |
|
| Q |
101 |
gtaaaggaagtgctgttcatgagtatgtaacacatattagaatagttagccctgcaggatgtgaagatggatatgctaaggttcgaaatcttaatgaatc |
200 |
Q |
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| T |
493717 |
gtaaaggaagtgctgttcatgagtatgtaacacatattagaatagttagccctgcaggatgtgaagatggatatgctaaggttcgaaatcttaatgaatc |
493618 |
T |
|
| Q |
201 |
tcaccaagatcttaatgcagcaagagtttctttaggggttcttggagttatttctcaggtatatatgcatgctccttttgttttgtatgtctagtagtac |
300 |
Q |
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||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||| |
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| T |
493617 |
tcatcaagatcttaatgcagccagagtttctttaggggttcttggagttatttctcagg----tatgcatgttccttttgttttgtatgtctagtagtac |
493522 |
T |
|
| Q |
301 |
atacatacat |
310 |
Q |
| |
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|||||||||| |
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| T |
493521 |
atacatacat |
493512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 29 - 128
Target Start/End: Original strand, 9063844 - 9063943
Alignment:
| Q |
29 |
atacaccatattggtggggtttaaccattggtggcctaattagcaccggtgcacatggaagtacattgtggggtaaaggaagtgctgttcatgagtatgt |
128 |
Q |
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||||||||||||||| |||||||| || ||||| | || | || ||||| |||||||| ||||||| ||| ||||||||||| |||||||| ||||| |
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| T |
9063844 |
atacaccatattggtatggtttaacaataggtggaatgatcggaactggtgctcatggaagcacattgtcggggaaaggaagtgcggttcatgactatgt |
9063943 |
T |
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