View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14922_high_12 (Length: 309)
Name: NF14922_high_12
Description: NF14922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14922_high_12 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 16 - 263
Target Start/End: Complemental strand, 10284622 - 10284374
Alignment:
| Q |
16 |
tcaagaactgaattt-gatgcgctttactagtatcacaagaaattaacttgattaattatttatgttgagaacttgttgaagcaaatcgaaaattaaata |
114 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
10284622 |
tcaagaactgaattttgatgcgctttactagtatcacaagaaattaacttgattaattatttatgttgagaacttattgaagcaaatcgaaacttaaata |
10284523 |
T |
|
| Q |
115 |
tgatgcatcgcgatttattcaaccaacacaacatcaagatcatagaatttttattcataatttggagaacaaaaacactatttcattctccgtttttcac |
214 |
Q |
| |
|
||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10284522 |
tgatgcatcacgatttattcaaccaacaaaacatcaagatcatagaatttttattcataatttggagaacaaaaacactatttcattctccgtttttcac |
10284423 |
T |
|
| Q |
215 |
ttacattcttatcataccaagggcattgtaaacaacttattgaaatgaa |
263 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10284422 |
tcacattcttatcataccaagagcattgtaaacaacttattgaaatgaa |
10284374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 16 - 263
Target Start/End: Complemental strand, 10265612 - 10265368
Alignment:
| Q |
16 |
tcaagaactgaattt-gatgcgctttactagtatcacaagaaattaacttgattaattatttatgttgagaacttgttgaagcaaatcgaaaattaaata |
114 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10265612 |
tcaagaactgaattttgatgcgctttactagtctcacaagaaattaacttgatta----tttatgttgagaacttgttgaagcaaatcgaaaattaaata |
10265517 |
T |
|
| Q |
115 |
tgatgcatcgcgatttattcaaccaacacaacatcaagatcatagaatttttattcataatttggagaacaaaaacactatttcattctccgtttttcac |
214 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10265516 |
tgatgcatcacgatttattcaaccaacacaacatcaagatcatagaatttttattcataatttggagaacaaaaacactatttcattctccgtttttcac |
10265417 |
T |
|
| Q |
215 |
ttacattcttatcataccaagggcattgtaaacaacttattgaaatgaa |
263 |
Q |
| |
|
| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
10265416 |
tcacattcttatcataccaagagcattgtaaacaacttattgaaatgaa |
10265368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 116 - 281
Target Start/End: Complemental strand, 10255195 - 10255027
Alignment:
| Q |
116 |
gatgcatcgcgatttattcaaccaacacaacatcaagatcatagaatttttattcataatttggagaacaaaa--acactattt-cattctccgtttttc |
212 |
Q |
| |
|
|||| ||| ||||||| ||||||||||||||||| | ||||||||| | ||||||||||||| || | |||| ||||||||| | ||||| ||||||| |
|
|
| T |
10255195 |
gatgtatcacgatttagtcaaccaacacaacatctaaatcatagaaatcttattcataatttcgaatagaaaagcacactattttctttctctgtttttc |
10255096 |
T |
|
| Q |
213 |
acttacattcttatcataccaagggcattgtaaacaacttattgaaatgaaaaagacaagaatatatat |
281 |
Q |
| |
|
||| | |||||||||||| |||| | ||||||||||| |||||||||||| | ||| |||||||||| |
|
|
| T |
10255095 |
actcatattcttatcatagcaagagtattgtaaacaaagtattgaaatgaagattacatgaatatatat |
10255027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 10256099 - 10256054
Alignment:
| Q |
55 |
aaattaacttgattaattatttatgttgagaacttgttgaagcaaa |
100 |
Q |
| |
|
||||||||||| ||| ||||||||||||||||| |||||||||||| |
|
|
| T |
10256099 |
aaattaacttggttagttatttatgttgagaacctgttgaagcaaa |
10256054 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University