View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14922_low_11 (Length: 385)
Name: NF14922_low_11
Description: NF14922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14922_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 6 - 249
Target Start/End: Original strand, 46107633 - 46107878
Alignment:
| Q |
6 |
gacatcatcacaaaacaccaaaaattaaacatgatttctcttgttaattttctctcacattaagtattaagggaatat--ataataggttttcctcctct |
103 |
Q |
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| T |
46107633 |
gacaccatcacaaaacaccaaaaattaaacatgatttctcttgttaattttctttcacattaagtattaagggaatatatataataggttttcctcctct |
46107732 |
T |
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| Q |
104 |
cacttaattttggctacatcatcaattttgatttaaaggcacagccgccagaagtaaggacaatgacagtctcattcccgaacactctcccaaaagccct |
203 |
Q |
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| T |
46107733 |
cacttaattttggctacatcatcaattttgatttaaaggcacagccgccagaagtaaggacaatgacagtctcattcccgaacactctcccaaaagccct |
46107832 |
T |
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| Q |
204 |
gcatcacgtggaatccttttgttgttcgttctgccatccctagcac |
249 |
Q |
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| T |
46107833 |
gcatcacgtggaatccttttgttgttcgttctgccatccctagcac |
46107878 |
T |
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Back To:
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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 138 - 229
Target Start/End: Complemental strand, 22539469 - 22539378
Alignment:
| Q |
138 |
aaaggcacagccgccagaagtaaggacaatgacagtctcattcccgaacactctcccaaaagccctgcatcacgtggaatccttttgttgtt |
229 |
Q |
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|||||||||||||||| |||||||||||||||||||| ||||| | || |||| | |||| || ||||||||||||| || | ||||||| |
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| T |
22539469 |
aaaggcacagccgccacaagtaaggacaatgacagtcccattcttgtactctcttcataaaggcccgcatcacgtggaaaccatctgttgtt |
22539378 |
T |
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