View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14922_low_14 (Length: 282)

Name: NF14922_low_14
Description: NF14922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14922_low_14
NF14922_low_14
[»] chr5 (1 HSPs)
chr5 (71-264)||(2265250-2265444)
[»] chr8 (1 HSPs)
chr8 (1-40)||(9431277-9431316)
[»] chr7 (1 HSPs)
chr7 (1-40)||(9055307-9055346)
[»] chr4 (3 HSPs)
chr4 (1-40)||(36812395-36812434)
chr4 (1-40)||(55595989-55596028)
chr4 (3-40)||(40629334-40629371)
[»] chr2 (2 HSPs)
chr2 (1-40)||(14797642-14797681)
chr2 (1-40)||(39737678-39737717)
[»] chr1 (3 HSPs)
chr1 (1-40)||(21441676-21441715)
chr1 (1-40)||(27810239-27810278)
chr1 (3-40)||(51250269-51250306)
[»] chr3 (1 HSPs)
chr3 (3-40)||(462395-462432)


Alignment Details
Target: chr5 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 71 - 264
Target Start/End: Complemental strand, 2265444 - 2265250
Alignment:
Q  71 ataccaaaagaccaagttattagaactaattagaaacccgtgaaggaaaaaggtgtgtttgatatactaaaa-gtaaatacgggacacaataatatcata 169  Q
    |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||    
T  2265444 atactaaaagatcaagttattagaactaattagaaacccgtgaaggaaaaaggtgtgtttgatatactaaaaagtaaatacggaacacaataatatcata 2265345  T
Q  170 caaaacaacatatgacaaacctttaaagtattgagcaactttttatgttgtatgatctatgtttggtggacaaaatattattttgacattttaga 264  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2265344 caaaacaacatatgacaaacctttaaagtattgagcaactttttatgttgtatgatctatgtttggtggacaaaatattattttgacattttaga 2265250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 9431277 - 9431316
Alignment:
Q  1 ataataagaatgtaacgagagtatgagagagaaagttgtc 40  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  9431277 ataataagaatgtaatgtgagtatgagagagaaagttgtc 9431316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 9055346 - 9055307
Alignment:
Q  1 ataataagaatgtaacgagagtatgagagagaaagttgtc 40  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  9055346 ataataagaatgtaatgtgagtatgagagagaaagttgtc 9055307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 36812395 - 36812434
Alignment:
Q  1 ataataagaatgtaacgagagtatgagagagaaagttgtc 40  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  36812395 ataataagaatgtaatgtgagtatgagagagaaagttgtc 36812434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 55596028 - 55595989
Alignment:
Q  1 ataataagaatgtaacgagagtatgagagagaaagttgtc 40  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  55596028 ataataagaatgtaatgtgagtatgagagagaaagttgtc 55595989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 40629334 - 40629371
Alignment:
Q  3 aataagaatgtaacgagagtatgagagagaaagttgtc 40  Q
    ||||||||||| ||| ||||||||||||||||||||||    
T  40629334 aataagaatgtcacgtgagtatgagagagaaagttgtc 40629371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 14797642 - 14797681
Alignment:
Q  1 ataataagaatgtaacgagagtatgagagagaaagttgtc 40  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  14797642 ataataagaatgtaatgtgagtatgagagagaaagttgtc 14797681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 39737678 - 39737717
Alignment:
Q  1 ataataagaatgtaacgagagtatgagagagaaagttgtc 40  Q
    |||||||||||||||||  |||||||||||||||||||||    
T  39737678 ataataagaatgtaacgtaagtatgagagagaaagttgtc 39737717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 21441715 - 21441676
Alignment:
Q  1 ataataagaatgtaacgagagtatgagagagaaagttgtc 40  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  21441715 ataataagaatgtaatgtgagtatgagagagaaagttgtc 21441676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 27810239 - 27810278
Alignment:
Q  1 ataataagaatgtaacgagagtatgagagagaaagttgtc 40  Q
    ||||||||||||||| | ||||||||||||||||||||||    
T  27810239 ataataagaatgtaatgtgagtatgagagagaaagttgtc 27810278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 51250269 - 51250306
Alignment:
Q  3 aataagaatgtaacgagagtatgagagagaaagttgtc 40  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  51250269 aataagaatataacgtgagtatgagagagaaagttgtc 51250306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 40
Target Start/End: Original strand, 462395 - 462432
Alignment:
Q  3 aataagaatgtaacgagagtatgagagagaaagttgtc 40  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  462395 aataagaatataacgtgagtatgagagagaaagttgtc 462432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University