View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14922_low_18 (Length: 246)
Name: NF14922_low_18
Description: NF14922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14922_low_18 |
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| [»] scaffold0047 (3 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 146; Significance: 5e-77; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 2313051 - 2312823
Alignment:
| Q |
2 |
tattagttccttaggtgctaataaaagttattgattgaagtgtttgttatcatttttgtagtttcattaaccttggcgtgaagtattttatattttgaca |
101 |
Q |
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| T |
2313051 |
tattagctccttaggcgctaataaaagttattgattaaagtgtttgatatcatttttgtagtttcattagctgagacgtgaagtattt-ataatttcaca |
2312953 |
T |
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| Q |
102 |
ttggattcaaaggtcaaactgatatttgattgaaggtctgttggctaatgattgaaatgcatgctcaaagacaactggtgagtataaagtgtattttctg |
201 |
Q |
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| T |
2312952 |
ttggaatcaaaggtcaaactgatatttgatcgaaggcctgttggctaatgattgaaatgcatgctcaaagacaaccggtgagtacaaagtgtattttctc |
2312853 |
T |
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| Q |
202 |
aagaagatcctctactttcgtattggtttt |
231 |
Q |
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| T |
2312852 |
aagatgatcctctactttcttattggtttt |
2312823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 134; Significance: 7e-70; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 2 - 231
Target Start/End: Complemental strand, 9262175 - 9261947
Alignment:
| Q |
2 |
tattagttccttaggtgctaataaaagttattgattgaagtgtttgttatcatttttgtagtttcattaaccttggcgtgaagtattttatattttgaca |
101 |
Q |
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| T |
9262175 |
tattagctccttaggcgctaataaaagttattgattaaagtgtttgatatcatttttatagtttcattagctgagacgtgaagtattt-ataatttcaca |
9262077 |
T |
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| Q |
102 |
ttggattcaaaggtcaaactgatatttgattgaaggtctgttggctaatgattgaaatgcatgctcaaagacaactggtgagtataaagtgtattttctg |
201 |
Q |
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| T |
9262076 |
ttggaatcaaaggtcaaactgatatttgatcgaaggcctgttggctaatgattgaaatgcatgctcaaagacaaccgatgagtataaagtgtattttctc |
9261977 |
T |
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| Q |
202 |
aagaagatcctctactttcgtattggtttt |
231 |
Q |
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| T |
9261976 |
aagatgatcctcttttttcttattggtttt |
9261947 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 37; Significance: 0.000000000006; HSPs: 3)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 49 - 101
Target Start/End: Complemental strand, 60794 - 60742
Alignment:
| Q |
49 |
tatcatttttgtagtttcattaaccttggcgtgaagtattttatattttgaca |
101 |
Q |
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| T |
60794 |
tatcatttttgtaatttcattagcttaggcgtgaagtattttatattttgaca |
60742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 6 - 36
Target Start/End: Complemental strand, 60824 - 60794
Alignment:
| Q |
6 |
agttccttaggtgctaataaaagttattgat |
36 |
Q |
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| T |
60824 |
agttccttaggtgctaataaaagttattgat |
60794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 167
Target Start/End: Complemental strand, 60739 - 60694
Alignment:
| Q |
122 |
gatatttgattgaaggtctgttggctaatgattgaaatgcatgctc |
167 |
Q |
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| T |
60739 |
gatatttgatcgaaggtctgttaactaacgattgaaatgcatgctc |
60694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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