View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14922_low_2 (Length: 516)

Name: NF14922_low_2
Description: NF14922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14922_low_2
NF14922_low_2
[»] chr3 (2 HSPs)
chr3 (11-492)||(12365974-12366462)
chr3 (11-178)||(12346074-12346241)
[»] chr2 (3 HSPs)
chr2 (172-499)||(19965441-19965770)
chr2 (11-105)||(19965334-19965428)
chr2 (56-208)||(36680927-36681081)
[»] chr5 (2 HSPs)
chr5 (23-222)||(12470240-12470439)
chr5 (113-206)||(18904781-18904873)
[»] chr4 (1 HSPs)
chr4 (21-189)||(18635740-18635908)
[»] chr6 (2 HSPs)
chr6 (165-431)||(657851-658119)
chr6 (373-440)||(6455808-6455875)
[»] chr1 (3 HSPs)
chr1 (57-189)||(6314492-6314624)
chr1 (128-236)||(4695278-4695385)
chr1 (192-236)||(6598871-6598915)
[»] chr7 (2 HSPs)
chr7 (94-157)||(27408657-27408720)
chr7 (192-236)||(44669439-44669483)


Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 11 - 492
Target Start/End: Complemental strand, 12366462 - 12365974
Alignment:
Q  11 cataggcatgaaaaagtctgaagcacagattatcaattaagactgtcatctcataatagagaggaccgtagcatggatcactagtcagatgttttctgat 110  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  12366462 cataggcatgaaaaagtctcaagcacagattatcaattaagactggcatctcataataaagaggaccgtagcatggatcactagtcagatgttttctgat 12366363  T
Q  111 atacaagatcctcatttttgaggcgagtgtagagcatacttgcatctctatagaggaacttatgatatgaaaataataatttagagctttcagaaagaag 210  Q
    | ||||||| ||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||    
T  12366362 acacaagatgctcatttctaaggcgagtgtagagcatacttgcatctctatagagggacttatgatatgaacataataacttagagctttcagaaagaag 12366263  T
Q  211 agagaaatttagaagaaaatgtttttcacaaaacacactaggatttatttcattcaagttgtgagaaatattttactactcttctccttttatagccaac 310  Q
    ||||||| ||||||||| |||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||     
T  12366262 agagaaagttagaagaacatgtttttcataaaacacactaggatttatttcattcaagttgtgtgaaatatgttacaactcttctccttttatagccaag 12366163  T
Q  311 gagatacattaaggacaaaaataaaactattcactcacatgccactaaaacactattggcatgcattata--------ataatggaaaacacttttatga 402  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||        ||||||||||||||| ||||||    
T  12366162 gagatacattaaggacaaaaataaaactattcactcacatg-cactaaaacactattgacatgcattataataattttataatggaaaacactgttatga 12366064  T
Q  403 cacttttgaccaaaatgtcacattattttgcacacttagtagtaaaaacaaaaacataactattcatgcacattgctattatgcaagaca 492  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12366063 cacttttgaccaaaatgtcacattattttgcacacttagtagtaaaaacaaaaatataactattcatgcacattgctattatgcaagaca 12365974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 11 - 178
Target Start/End: Complemental strand, 12346241 - 12346074
Alignment:
Q  11 cataggcatgaaaaagtctgaagcacagattatcaattaagactgtcatctcataatagagaggaccgtagcatggatcactagtcagatgttttctgat 110  Q
    ||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  12346241 cataggcatgaaaaagtctcaagcacagattatcaattaagactggcatctcataatagagaggaccatagcatggatcactagtcagatgttttctgat 12346142  T
Q  111 atacaagatcctcatttttgaggcgagtgtagagcatacttgcatctctatagaggaacttatgatat 178  Q
    | ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||    
T  12346141 acacaagatcctcatttctgaggcgagtgtagagcatacttgcatctctatagagggacttatgatat 12346074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 174; Significance: 2e-93; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 172 - 499
Target Start/End: Original strand, 19965441 - 19965770
Alignment:
Q  172 atgatatgaaaataataatttagagctttcagaaagaagagagaaatttagaagaaaatgtttttcacaaaacacactaggattt-atttcattcaagtt 270  Q
    |||||||||  ||||||| |||||||||||||||| |||||||||||||||||||| |||||||||   |||||||||||||||| |||| |||||||||    
T  19965441 atgatatgatcataataacttagagctttcagaaataagagagaaatttagaagaacatgtttttcttgaaacacactaggattttatttgattcaagtt 19965540  T
Q  271 gtgagaaatattttactactcttctccttttatagccaacgagatacattaaggacaaaaataaaactattcactcacatgccact-aaaacactattgg 369  Q
    |||||||| || |||| | |||||||||||||||||||| ||| |||| ||| |||||| ||| |||||||||||| ||||||||| |||||||||||||    
T  19965541 gtgagaaagatgttacaattcttctccttttatagccaatgaggtacactaaagacaaagatagaactattcactcgcatgccactgaaaacactattgg 19965640  T
Q  370 catgcattataataatggaaaacacttttatgacacttttgaccaaaatgtcacattattttgcacacttagtagtaaaaacaaaaacataactattcat 469  Q
    ||||||||||||  |||||| ||| |||||||||||||||||| ||||||||||||||||||||||||||| || |||||||||| | | ||||| || |    
T  19965641 catgcattataactatggaagacatttttatgacacttttgactaaaatgtcacattattttgcacacttaatactaaaaacaaatatacaactaatcgt 19965740  T
Q  470 gcacattgctattatgcaagacaagttttt 499  Q
     || ||||||||||||||||||| ||||||    
T  19965741 acatattgctattatgcaagacacgttttt 19965770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 11 - 105
Target Start/End: Original strand, 19965334 - 19965428
Alignment:
Q  11 cataggcatgaaaaagtctgaagcacagattatcaattaagactgtcatctcataatagagaggaccgtagcatggatcactagtcagatgtttt 105  Q
    ||||||||| ||||||||| ||||||| ||| ||||||||||||| |||| |||||||||||| |||||||||||||||  ||||||||||||||    
T  19965334 cataggcataaaaaagtctcaagcacaaattgtcaattaagactgacatcccataatagagagcaccgtagcatggatctatagtcagatgtttt 19965428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 56 - 208
Target Start/End: Complemental strand, 36681081 - 36680927
Alignment:
Q  56 tcatctcataatagagaggaccgtagcatggatcactagtcagatgttttctgatatacaagatcctcatttttgaggcgagtgtagagcata---cttg 152  Q
    ||||||| ||| ||||| || | || ||||||||| |||||| || |||| ||||| ||||||||| ||||| |||||||||| ||||||||    ||||    
T  36681081 tcatctcgtaaaagagaagaacataacatggatcaatagtcaaatattttatgatacacaagatccgcatttatgaggcgagtatagagcatcaagcttg 36680982  T
Q  153 catctctatagaggaacttatgatatgaaaataataatttagagctttcagaaaga 208  Q
    |||||||||||||||| | | || ||||| |||||||  |||||||||||||||||    
T  36680981 catctctatagaggaattaaagacatgaacataataa-ctagagctttcagaaaga 36680927  T

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Target: chr5 (Bit Score: 77; Significance: 2e-35; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 23 - 222
Target Start/End: Original strand, 12470240 - 12470439
Alignment:
Q  23 aaagtctgaagcacagattatcaattaagactgtcatctcataatagagaggaccgtagcatggatcactagtcagatgttttctgatatacaaga-tcc 121  Q
    ||||||| || |||| | || ||||||||||| |||| |||||||||||||||  ||| ||||||||| |||||||||||||||||||| |||| | |||    
T  12470240 aaagtctcaaccacaaactagcaattaagactatcatttcataatagagaggaatgtaacatggatcaatagtcagatgttttctgatacacaaaagtcc 12470339  T
Q  122 tcatttttgaggcgagtgtagagcatacttgcatctctatagaggaacttatgatatgaaaataataatttagagctttcagaaagaagagagaaattta 221  Q
    || ||| ||||||||||||||||| |||||||||||||||||  ||| | || ||||||| || ||||  ||||| ||||||| | ||||||||||||||    
T  12470340 tcgtttctgaggcgagtgtagagcgtacttgcatctctatagttgaattaataatatgaacatcataa-ctagagttttcagacataagagagaaattta 12470438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 113 - 206
Target Start/End: Complemental strand, 18904873 - 18904781
Alignment:
Q  113 acaagatcctcatttttgaggcgagtgtagagcatacttgcatctctatagaggaacttatgatatgaaaataataatttagagctttcagaaa 206  Q
    |||||||| |||||| ||||||||||||||||||||||||||||| |||||||||| |  ||| ||||| |||||||  |||||||||||||||    
T  18904873 acaagatcgtcatttatgaggcgagtgtagagcatacttgcatctatatagaggaattactgacatgaatataataa-ctagagctttcagaaa 18904781  T

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Target: chr4 (Bit Score: 77; Significance: 2e-35; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 21 - 189
Target Start/End: Original strand, 18635740 - 18635908
Alignment:
Q  21 aaaaagtctgaagcacagattatcaattaagactgtcatctcataatagagaggaccgtagcatggatcactagtcagatgttttctgatatacaagatc 120  Q
    ||||||||| || ||||||||||||||||| | || |||| ||||||| |||||| ||||| ||||||   ||||||||||||||||||||  |||||||    
T  18635740 aaaaagtctcaatcacagattatcaattaaaattggcatcccataatatagaggatcgtagtatggatatatagtcagatgttttctgatacgcaagatc 18635839  T
Q  121 ctcatttttgaggcgagtgtagagcatacttgcatctctatagaggaacttatgatatgaaaataataa 189  Q
    |||||||  |||| |||||||||| ||||| |||||||||| ||| || |||||||||||| |||||||    
T  18635840 ctcatttcagaggtgagtgtagagaatactagcatctctatggagaaaattatgatatgaagataataa 18635908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 62; Significance: 1e-26; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 165 - 431
Target Start/End: Complemental strand, 658119 - 657851
Alignment:
Q  165 ggaacttatgatatgaaaataataatttagagctttcagaaagaagagaga-aatttagaagaaaatgtttttcacaaaacacactaggattt-atttca 262  Q
    |||| |||||||||||| ||||||||| |||||||||  || ||| | | | |||||||||||| ||||||| || ||||||||||| ||||| |||| |    
T  658119 ggaatttatgatatgaacataataatt-agagctttctaaatgaaaaaaaagaatttagaagaacatgttttacataaaacacactacgattttatttga 658021  T
Q  263 ttcaagttgtgagaaatattttactactcttctccttttatagccaacgagatacattaaggacaaaaataaaactattcactcacatgccacta-aaac 361  Q
    ||   ||| ||||  |||| |||| |||||||||||||||||||||| |||||||| ||| || ||| | | |||||| ||| |||||| ||||| ||||    
T  658020 ttttcgttatgagggatatgttacaactcttctccttttatagccaatgagatacactaaagataaagacacaactatccacacacatgtcactataaac 657921  T
Q  362 actattggcatgcattataataatggaaaacacttttatgacacttttgaccaaaatgtcacattatttt 431  Q
    | |||||  | || ||| ||| |||||| |||   |||||||||||||||| || |||||||||||||||    
T  657920 attattgaaaagctttacaattatggaagacatacttatgacacttttgactaacatgtcacattatttt 657851  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 373 - 440
Target Start/End: Complemental strand, 6455875 - 6455808
Alignment:
Q  373 gcattataataatggaaaacacttttatgacacttttgaccaaaatgtcacattattttgcacactta 440  Q
    |||||||||| |||||| ||| |||||| ||||||||||| ||||||||||||||||||||| |||||    
T  6455875 gcattataattatggaagacatttttataacacttttgactaaaatgtcacattattttgcatactta 6455808  T

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Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 57 - 189
Target Start/End: Complemental strand, 6314624 - 6314492
Alignment:
Q  57 catctcataatagagaggaccgtagcatggatcactagtcagatgttttctgatatacaagatcctcatttttgaggcgagtgtagagcatacttgcatc 156  Q
    |||||| |||||||||||||| || ||| ||| | |||||| ||||||| | |||||||||||| |||||| | ||| ||||| || |||||||| ||||    
T  6314624 catctcgtaatagagaggaccataacatagattaatagtcatatgttttttaatatacaagatcgtcatttctaaggtgagtggagcgcatacttacatc 6314525  T
Q  157 tctatagaggaacttatgatatgaaaataataa 189  Q
    ||||||||| || | |||||||||| |||||||    
T  6314524 tctatagagaaattaatgatatgaacataataa 6314492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 128 - 236
Target Start/End: Original strand, 4695278 - 4695385
Alignment:
Q  128 ttgaggcgagtgtagagcatacttgcatctctatagaggaacttatgatatgaaaataataatttagagctttcagaaagaagagagaaatttagaagaa 227  Q
    ||||||||||||| |||| | |||| ||||||||||||||| | |||| ||||  ||||||| | |||||||| | |||||||| |||||||||||||||    
T  4695278 ttgaggcgagtgttgagcgtccttgtatctctatagaggaattaatgacatgaccataataact-agagcttttaaaaagaagatagaaatttagaagaa 4695376  T
Q  228 aatgttttt 236  Q
     ||||||||    
T  4695377 catgttttt 4695385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 6598915 - 6598871
Alignment:
Q  192 tagagctttcagaaagaagagagaaatttagaagaaaatgttttt 236  Q
    ||||| ||||| |||||||||||||||||||||| | ||||||||    
T  6598915 tagagttttcataaagaagagagaaatttagaagtacatgttttt 6598871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 27408720 - 27408657
Alignment:
Q  94 gtcagatgttttctgatatacaagatcctcatttttgaggcgagtgtagagcatacttgcatct 157  Q
    |||||||||| | |||||||||||||| | ||||| |||||||||||||| |||||||||||||    
T  27408720 gtcagatgttctttgatatacaagatctttattttcgaggcgagtgtagaacatacttgcatct 27408657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 192 - 236
Target Start/End: Complemental strand, 44669483 - 44669439
Alignment:
Q  192 tagagctttcagaaagaagagagaaatttagaagaaaatgttttt 236  Q
    ||||||||||| |||||||||||||||||||||| | ||||||||    
T  44669483 tagagctttcataaagaagagagaaatttagaaggacatgttttt 44669439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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