View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14922_low_4 (Length: 430)

Name: NF14922_low_4
Description: NF14922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14922_low_4
NF14922_low_4
[»] chr1 (3 HSPs)
chr1 (14-413)||(35267827-35268229)
chr1 (143-247)||(9906275-9906380)
chr1 (164-247)||(18703503-18703586)
[»] chr8 (4 HSPs)
chr8 (144-247)||(7275603-7275707)
chr8 (143-246)||(26174996-26175097)
chr8 (33-87)||(4677500-4677554)
chr8 (14-85)||(26175143-26175214)
[»] chr7 (6 HSPs)
chr7 (143-247)||(41832181-41832286)
chr7 (143-246)||(34512398-34512499)
chr7 (24-125)||(219392-219493)
chr7 (161-246)||(7736904-7736989)
chr7 (164-198)||(219486-219520)
chr7 (204-246)||(7734889-7734931)
[»] chr3 (3 HSPs)
chr3 (143-243)||(10745186-10745287)
chr3 (143-246)||(42657261-42657362)
chr3 (145-234)||(4606961-4607048)
[»] chr2 (4 HSPs)
chr2 (143-247)||(24039034-24039139)
chr2 (143-247)||(31269919-31270024)
chr2 (13-125)||(36316582-36316695)
chr2 (164-296)||(36316688-36316821)
[»] chr5 (4 HSPs)
chr5 (143-246)||(35305074-35305178)
chr5 (157-247)||(21256195-21256285)
chr5 (43-125)||(17823209-17823291)
chr5 (145-234)||(41949893-41949980)
[»] scaffold0525 (1 HSPs)
scaffold0525 (145-247)||(6382-6485)
[»] chr4 (4 HSPs)
chr4 (147-273)||(55850240-55850366)
chr4 (143-267)||(11814679-11814804)
chr4 (161-246)||(5444315-5444400)
chr4 (72-121)||(40659811-40659861)
[»] scaffold1412 (1 HSPs)
scaffold1412 (143-246)||(242-343)
[»] scaffold0001 (1 HSPs)
scaffold0001 (143-246)||(145101-145202)
[»] chr6 (2 HSPs)
chr6 (143-246)||(6823514-6823615)
chr6 (339-413)||(8837626-8837699)


Alignment Details
Target: chr1 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 14 - 413
Target Start/End: Original strand, 35267827 - 35268229
Alignment:
Q  14 caacacttatccaccatccggcagaagcaatcatcaacaaatccaattaaggcacaacacttaaccaccaagcagaaactgtatgtcaagtttaaccact 113  Q
    |||| |||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35267827 caacgcttaaccaccatccggcagaagcaatcatcaacaatgccaattaaggcacaacacttaaccaccaagcagaaactgtatgtcaagtttaaccact 35267926  T
Q  114 tggcagaagcacnnnnnnnnnnnnnnnng---cgacgcttaaccatcttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacat 210  Q
    ||||||||||||                    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35267927 tggcagaagcacaaaaaaaaaaaaaaaaaaaacgacgattaaccatcttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacat 35268026  T
Q  211 ggcttaaccatcatgaacagaagcacaacacaagaagcaaagccagcatatgctaataagaaaaatgaagaagaaagccatggacagaaactattaccac 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  35268027 ggcttaaccatcatgaacagaagcacaacacaagaagcaaagccagcataggctaataagaaaaatgaagaagaaagccatggacagaaactattaccac 35268126  T
Q  311 agtatgacaggaaaactcaatgagcttcaaacataatggatcctccaacaatgaagcttcaaaatatccaacaaattgggtgtgatcttcacaatgatat 410  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35268127 agtatgacaggaaaactcaatgagcttcaaacataatggatcctccaacaatgaagcttcaaaatatccaacaaattgggtgtgatcttcacaatgatat 35268226  T
Q  411 aca 413  Q
    |||    
T  35268227 aca 35268229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 143 - 247
Target Start/End: Original strand, 9906275 - 9906380
Alignment:
Q  143 cgacgcttaaccatc-ttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacac 241  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  9906275 cgacgcttaaccatccttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccatcatgaacagaagcacaagac 9906374  T
Q  242 aagaag 247  Q
    ||||||    
T  9906375 aagaag 9906380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 164 - 247
Target Start/End: Original strand, 18703503 - 18703586
Alignment:
Q  164 agaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacacaagaag 247  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||| ||||||||    
T  18703503 agaagcacaacgacgcttaaccattcatgacagaagcttatcaacatagcttaaccatcatgaacagaaacacaagacaagaag 18703586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 81; Significance: 6e-38; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 144 - 247
Target Start/End: Original strand, 7275603 - 7275707
Alignment:
Q  144 gacgcttaaccatc-ttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacaca 242  Q
    |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||    
T  7275603 gacgcttaaccatccttggacagaagcacaacgacgcttaaccattcatgacagaagcttatcaacatagcttaaccatcatgaacagaagcacaagaca 7275702  T
Q  243 agaag 247  Q
    |||||    
T  7275703 agaag 7275707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 143 - 246
Target Start/End: Complemental strand, 26175097 - 26174996
Alignment:
Q  143 cgacgcttaaccatc-ttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacac 241  Q
    |||| |||||||||| ||||| |||||||||||   |||||||||||||||||  |||||||||||||||||| | ||||||||||||||||||||| ||    
T  26175097 cgacacttaaccatccttggacagaagcacaac---gcttaaccattcatgacgaaagcttatcaacatggctgatccatcatgaacagaagcacaaaac 26175001  T
Q  242 aagaa 246  Q
    |||||    
T  26175000 aagaa 26174996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 33 - 87
Target Start/End: Complemental strand, 4677554 - 4677500
Alignment:
Q  33 ggcagaagcaatcatcaacaaatccaattaaggcacaacacttaaccaccaagca 87  Q
    |||||||||||||||||||||| |||||||||||||||| |||||||||||||||    
T  4677554 ggcagaagcaatcatcaacaaagccaattaaggcacaacgcttaaccaccaagca 4677500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 14 - 85
Target Start/End: Complemental strand, 26175214 - 26175143
Alignment:
Q  14 caacacttatccaccatccggcagaagcaatcatcaacaaatccaattaaggcacaacacttaaccaccaag 85  Q
    |||| |||| ||||||||||| ||||||||||||||||||| ||||||||||||| || |||||||| ||||    
T  26175214 caacgcttaaccaccatccggtagaagcaatcatcaacaaagccaattaaggcaccacgcttaaccatcaag 26175143  T

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Target: chr7 (Bit Score: 78; Significance: 3e-36; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 143 - 247
Target Start/End: Complemental strand, 41832286 - 41832181
Alignment:
Q  143 cgacgcttaaccatc-ttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacac 241  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  41832286 cgacgcttaaccatccttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccatcatgaacagaagcacaagac 41832187  T
Q  242 aagaag 247  Q
    ||||||    
T  41832186 aagaag 41832181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 143 - 246
Target Start/End: Complemental strand, 34512499 - 34512398
Alignment:
Q  143 cgacgcttaaccatc-ttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacac 241  Q
    ||||||||||||||| ||||| |||||||||||   ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||| ||    
T  34512499 cgacgcttaaccatccttggacagaagcacaac---gcttaaccattcatgacagaagcttattaacatagcttaaccatcatgaacagaagcacaagac 34512403  T
Q  242 aagaa 246  Q
    |||||    
T  34512402 aagaa 34512398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 24 - 125
Target Start/End: Original strand, 219392 - 219493
Alignment:
Q  24 ccaccatccggcagaagcaatcatcaacaaatccaattaaggcacaacacttaaccaccaagcagaaactgtatgtcaagtttaaccacttggcagaagc 123  Q
    |||||||| ||||||||   |||||||||||  |||||| || ||||| ||||||||||||| ||||||| |||| | ||||||||||||||||||||||    
T  219392 ccaccatctggcagaagttgtcatcaacaaagacaattaggggacaacgcttaaccaccaagtagaaactatatgaccagtttaaccacttggcagaagc 219491  T
Q  124 ac 125  Q
    ||    
T  219492 ac 219493  T

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Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 161 - 246
Target Start/End: Complemental strand, 7736989 - 7736904
Alignment:
Q  161 gatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacacaagaa 246  Q
    ||||||||||||| ||| ||||||| ||||||| ||||||||||||| ||| || |||||||||||||| ||||| || |||||||    
T  7736989 gatagaagcacaataactcttaaccgttcatgatagaagcttatcaatatgactgaaccatcatgaacaaaagcataatacaagaa 7736904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 164 - 198
Target Start/End: Original strand, 219486 - 219520
Alignment:
Q  164 agaagcacaacaacgcttaaccattcatgacagaa 198  Q
    |||||||||||||||||||||||| ||||||||||    
T  219486 agaagcacaacaacgcttaaccatccatgacagaa 219520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 7734931 - 7734889
Alignment:
Q  204 tcaacatggcttaaccatcatgaacagaagcacaacacaagaa 246  Q
    |||||||| || ||||||||||||||||||||||| |||||||    
T  7734931 tcaacatgactgaaccatcatgaacagaagcacaagacaagaa 7734889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 143 - 243
Target Start/End: Complemental strand, 10745287 - 10745186
Alignment:
Q  143 cgacgcttaaccatc-ttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacac 241  Q
    ||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  10745287 cgacgcttaacaatccttggatagaagcacaacaacacttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaatcacaatac 10745188  T
Q  242 aa 243  Q
    ||    
T  10745187 aa 10745186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 143 - 246
Target Start/End: Original strand, 42657261 - 42657362
Alignment:
Q  143 cgacgcttaaccatc-ttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacac 241  Q
    ||||||||||||||| ||||| ||||||||||   |||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| |||| ||    
T  42657261 cgacgcttaaccatccttggacagaagcacaa---cgcttaaccattcatgacagaagcctatcaacatagcttaaccatcatgaacagaagtacaagac 42657357  T
Q  242 aagaa 246  Q
    |||||    
T  42657358 aagaa 42657362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 145 - 234
Target Start/End: Complemental strand, 4607048 - 4606961
Alignment:
Q  145 acgcttaaccatc-ttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagc 234  Q
    ||||||||||||| ||||  |||||||||||||||||||||||| ||||| ||||||    ||||| ||||||||||||||| ||||||||    
T  4607048 acgcttaaccatccttggccagaagcacaacaacgcttaaccatccatgatagaagc---acaacaaggcttaaccatcatggacagaagc 4606961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 78; Significance: 3e-36; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 143 - 247
Target Start/End: Complemental strand, 24039139 - 24039034
Alignment:
Q  143 cgacgcttaaccatc-ttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacac 241  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  24039139 cgacgcttaaccatccttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccatcatgaacagaagcacaagac 24039040  T
Q  242 aagaag 247  Q
    ||||||    
T  24039039 aagaag 24039034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 143 - 247
Target Start/End: Original strand, 31269919 - 31270024
Alignment:
Q  143 cgacgcttaaccatc-ttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacac 241  Q
    ||||||||||||||| ||||| ||||||||||| ||||||||||||| |||||| |||||||||||||| ||||||||||||||||||||||||||| ||    
T  31269919 cgacgcttaaccatccttggacagaagcacaacgacgcttaaccattaatgacaaaagcttatcaacatagcttaaccatcatgaacagaagcacaagac 31270018  T
Q  242 aagaag 247  Q
    ||||||    
T  31270019 aagaag 31270024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 13 - 125
Target Start/End: Original strand, 36316582 - 36316695
Alignment:
Q  13 acaacacttatccaccatccggcagaagcaatcatc-aacaaatccaattaaggcacaacacttaaccaccaagcagaaactgtatgtcaagtttaacca 111  Q
    ||||| |||| |||||||| || |||||||| || | |||||| |||||||||||||||| ||||||||||||||||||||| ||||| |||||||||||    
T  36316582 acaacgcttaaccaccatctggtagaagcaaacaaccaacaaagccaattaaggcacaacgcttaaccaccaagcagaaactatatgtaaagtttaacca 36316681  T
Q  112 cttggcagaagcac 125  Q
    ||| ||||||||||    
T  36316682 cttagcagaagcac 36316695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 164 - 296
Target Start/End: Original strand, 36316688 - 36316821
Alignment:
Q  164 agaagcacaacaacgcttaaccattcatgacagaagcttatcaacat-ggcttaaccatcatgaacagaagcacaacacaagaagcaaagccagcatatg 262  Q
    |||||||||| ||| ||||||||| ||||||||| ||  | |||||  ||||||||||||||| ||  |||||||| |||||||  ||||||| |||| |    
T  36316688 agaagcacaataacacttaaccatccatgacagaggcacaacaacaaaggcttaaccatcatggactaaagcacaaaacaagaatgaaagccatcatagg 36316787  T
Q  263 ctaataagaaaaatgaagaagaaagccatggaca 296  Q
    ||||||||||| |||| |||| ||||||||||||    
T  36316788 ctaataagaaagatgaggaagtaagccatggaca 36316821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 143 - 246
Target Start/End: Original strand, 35305074 - 35305178
Alignment:
Q  143 cgacgcttaaccatc-ttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacac 241  Q
    ||||||||||||||| ||||| ||||||||||||||||||||| ||||||||| ||||| |||||||||| |||||||||||||||||||||||||| ||    
T  35305074 cgacgcttaaccatccttggacagaagcacaacaacgcttaactattcatgacggaagcatatcaacatgtcttaaccatcatgaacagaagcacaagac 35305173  T
Q  242 aagaa 246  Q
    |||||    
T  35305174 aagaa 35305178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 157 - 247
Target Start/End: Complemental strand, 21256285 - 21256195
Alignment:
Q  157 cttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacacaagaag 247  Q
    |||||| ||||||||||| ||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  21256285 cttggacagaagcacaacgacgcttaaccatttatgacagaagcttatcaacatagcttaaccatcatgaacagaagcacaagacaagaag 21256195  T

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Target: chr5; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 43 - 125
Target Start/End: Complemental strand, 17823291 - 17823209
Alignment:
Q  43 atcatcaacaaatccaattaaggcacaacacttaaccaccaagcagaaactgtatgtcaagtttaaccacttggcagaagcac 125  Q
    |||||||||||| || ||||||||||||| ||||||||||||||||||||| |||||| ||||| ||||||||||||||||||    
T  17823291 atcatcaacaaagccgattaaggcacaacgcttaaccaccaagcagaaactatatgtcgagttttaccacttggcagaagcac 17823209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 145 - 234
Target Start/End: Original strand, 41949893 - 41949980
Alignment:
Q  145 acgcttaaccatct-tggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagc 234  Q
    |||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||    ||||| ||||||||||||||| ||||||||    
T  41949893 acgcttaaccatccgtggatagaagcacaacaacgcttaaccatccatgacagaagc---acaacaaggcttaaccatcatggacagaagc 41949980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0525 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: scaffold0525
Description:

Target: scaffold0525; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 145 - 247
Target Start/End: Original strand, 6382 - 6485
Alignment:
Q  145 acgcttaaccatc-ttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacacaa 243  Q
    |||||| |||||| ||||| ||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| ||||    
T  6382 acgcttgaccatccttggacagaagcacaacgacgcttaaccattcatgacaaaagcttatcaacatagcttaaccatcatgaacagaagcacaagacaa 6481  T
Q  244 gaag 247  Q
    ||||    
T  6482 gaag 6485  T

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Target: chr4 (Bit Score: 71; Significance: 5e-32; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 147 - 273
Target Start/End: Original strand, 55850240 - 55850366
Alignment:
Q  147 gcttaaccatcttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacacaagaa 246  Q
    ||||||||||| | || |||||| |||||||||||||||||||||||  ||||| |||||||||| |||||||||||||||||||||||||| |||||||    
T  55850240 gcttaaccatcatagacagaagctcaacaacgcttaaccattcatgatggaagcatatcaacatgtcttaaccatcatgaacagaagcacaagacaagaa 55850339  T
Q  247 gcaaagccagcatatgctaataagaaa 273  Q
     |||||| | |||| ||||| ||||||    
T  55850340 tcaaagctatcataggctaacaagaaa 55850366  T

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Target: chr4; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 143 - 267
Target Start/End: Complemental strand, 11814804 - 11814679
Alignment:
Q  143 cgacgcttaaccatctt-ggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacac 241  Q
    ||||||||||||||||| ||| ||||||||||||||||  |||||||||||||  |||| ||||||||||||||||||||||||||||||||||||| ||    
T  11814804 cgacgcttaaccatctttggacagaagcacaacaacgccaaaccattcatgacgaaagcctatcaacatggcttaaccatcatgaacagaagcacaagac 11814705  T
Q  242 aagaagcaaagccagcatatgctaat 267  Q
    || ||| ||| ||| |||| ||||||    
T  11814704 aataagtaaaaccatcataggctaat 11814679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 161 - 246
Target Start/End: Complemental strand, 5444400 - 5444315
Alignment:
Q  161 gatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacacaagaa 246  Q
    ||||||||||||| |||||||||||||||||||| ||||| ||||||||||||| | |||||||||||||||||| || |||||||    
T  5444400 gatagaagcacaataacgcttaaccattcatgacggaagcgtatcaacatggctgatccatcatgaacagaagcagaagacaagaa 5444315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 40659811 - 40659861
Alignment:
Q  72 acttaaccaccaagcagaaactgtatgtc-aagtttaaccacttggcagaa 121  Q
    |||||||||||||||||||||| ||  || |||||||||||||||||||||    
T  40659811 acttaaccaccaagcagaaactataactcaaagtttaaccacttggcagaa 40659861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1412 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold1412
Description:

Target: scaffold1412; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 143 - 246
Target Start/End: Original strand, 242 - 343
Alignment:
Q  143 cgacgcttaaccatc-ttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacac 241  Q
    ||||||||||||||| ||||| ||||||||||    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  242 cgacgcttaaccatccttggacagaagcacaat---gcttaaccattcatgacagaagcttatcaacatagcttaaccatcatgaacagaagcacaagac 338  T
Q  242 aagaa 246  Q
    |||||    
T  339 aagaa 343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 67; Significance: 1e-29; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 143 - 246
Target Start/End: Original strand, 145101 - 145202
Alignment:
Q  143 cgacgcttaaccatc-ttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacac 241  Q
    ||||||||||||||| ||||| ||||||||||    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  145101 cgacgcttaaccatccttggacagaagcacaat---gcttaaccattcatgacagaagcttatcaacatagcttaaccatcatgaacagaagcacaagac 145197  T
Q  242 aagaa 246  Q
    |||||    
T  145198 aagaa 145202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 143 - 246
Target Start/End: Original strand, 6823514 - 6823615
Alignment:
Q  143 cgacgcttaaccatc-ttggatagaagcacaacaacgcttaaccattcatgacagaagcttatcaacatggcttaaccatcatgaacagaagcacaacac 241  Q
    ||||||||||| ||| ||||| ||||||||||   |||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| ||    
T  6823514 cgacgcttaacaatccttggacagaagcacaa---cgcttaaccattcatgccagaagcttatcaacatagcttaaccatcatgaacagaagcacaagac 6823610  T
Q  242 aagaa 246  Q
    |||||    
T  6823611 aagaa 6823615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 339 - 413
Target Start/End: Complemental strand, 8837699 - 8837626
Alignment:
Q  339 aaacataatggatcctccaacaatgaagcttcaaaatatccaacaaattgggtgtgatcttcacaatgatataca 413  Q
    ||||||||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||||||||||    
T  8837699 aaacataatggatcctccaacaacgaagctt-aaaatatccaacaaattgggtgtaatcttcacaatgatataca 8837626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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