View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14922_low_6 (Length: 418)
Name: NF14922_low_6
Description: NF14922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14922_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 18 - 401
Target Start/End: Complemental strand, 33177321 - 33176936
Alignment:
| Q |
18 |
atcctatgttctctctcttcatactcagccgcgcgacaaaagctcaacctttcatcctttcctcattaaaaatggcggtgtgcagtcttatcagcgcagc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
|
|
| T |
33177321 |
atcctatgttctctctcttcatactcagccgcgcgacaaaagctcaacctttcatcctttcctcattaaaaatggcggtgtgcagtcttatcagtgcaac |
33177222 |
T |
|
| Q |
118 |
tccacctctaaacacctctcggggtcgttcaccaaggg-ttcctattgactactcactactatttcatccaaggagttctgatcggagtgtttttccatt |
216 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
33177221 |
accacctttaaacacctctcggggtcgttcaccaaggggttcctatcgactactcactactatttcatccaaggagttctaatcggagtgtttttccatt |
33177122 |
T |
|
| Q |
217 |
gttgtgatcctctagtaaactttatttgttatttaaagcctctgcggacctctttcccttgagcttgtttttaggactctattattctgcaccaccatgg |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||||| ||| ||||||||||||||| ||||| |||||| |
|
|
| T |
33177121 |
gttgtgatcctctagtaaactttatttgttatttaaagccttggcggatctcgttcccttgagcttgatttcaggactctattattcggcaccgccatgg |
33177022 |
T |
|
| Q |
317 |
gctcttcacgaattttctcttgcaatttttggtttaaaaatattggatttagttttttctggattcaagatat-ggtttctttcat |
401 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||||||||| |
|
|
| T |
33177021 |
gctcttcacgaattttctcttgcaatttttggtttaaaaatattggatttagttgtttctgggttcaagatatgggtttctttcat |
33176936 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 87 - 287
Target Start/End: Complemental strand, 23356992 - 23356790
Alignment:
| Q |
87 |
aaatggcggtgtgcagtcttatcagcgcagctccacctctaaacacctctcggggtcgttcaccaagg-gttcctattgactactcactactatttcatc |
185 |
Q |
| |
|
|||||| ||||||||| |||||||||||| | ||| ||||||||||||| |||| |||||||||| ||||| || |||| ||||||||||||||||| |
|
|
| T |
23356992 |
aaatggtggtgtgcaggcttatcagcgcaacattacccttaaacacctctcgaggtcattcaccaaggagttccaatagacttctcactactatttcatc |
23356893 |
T |
|
| Q |
186 |
caaggagttctgatcggagtgtttttc-cattgttgtgatcctctagtaaactttatttgttatttaaagcctctgcggacctctttcccttgagcttgt |
284 |
Q |
| |
|
||||| || ||||||||||||||||| | |||||||| |||||||||||||||||||||| ||||| ||||| |||| |||| ||| ||||||||||| |
|
|
| T |
23356892 |
caaggggtactgatcggagtgtttttgtccttgttgtggtcctctagtaaactttatttgtgatttagagccttcgcggtcctcgttcacttgagcttgt |
23356793 |
T |
|
| Q |
285 |
ttt |
287 |
Q |
| |
|
||| |
|
|
| T |
23356792 |
ttt |
23356790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 342 - 387
Target Start/End: Complemental strand, 23356753 - 23356708
Alignment:
| Q |
342 |
tttttggtttaaaaatattggatttagttttttctggattcaagat |
387 |
Q |
| |
|
||||||||||||||||||||||||| ||| ||||| |||||||||| |
|
|
| T |
23356753 |
tttttggtttaaaaatattggatttggttgtttctagattcaagat |
23356708 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University