View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14922_low_7 (Length: 415)

Name: NF14922_low_7
Description: NF14922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14922_low_7
NF14922_low_7
[»] chr3 (7 HSPs)
chr3 (192-407)||(29748014-29748229)
chr3 (19-149)||(29747795-29747925)
chr3 (166-382)||(40498982-40499208)
chr3 (166-383)||(48568259-48568486)
chr3 (166-382)||(31796564-31796790)
chr3 (318-381)||(41083002-41083066)
chr3 (249-290)||(41083102-41083143)
[»] chr5 (4 HSPs)
chr5 (166-382)||(38624819-38625045)
chr5 (166-358)||(11772455-11772656)
chr5 (318-379)||(17553244-17553306)
chr5 (320-357)||(12251204-12251241)
[»] chr7 (9 HSPs)
chr7 (166-382)||(46245225-46245451)
chr7 (192-384)||(11747521-11747717)
chr7 (166-384)||(15135481-15135709)
chr7 (319-383)||(31734484-31734549)
chr7 (196-290)||(37131969-37132063)
chr7 (318-374)||(14780683-14780740)
chr7 (318-374)||(15230702-15230759)
chr7 (318-358)||(37132099-37132139)
chr7 (321-359)||(30791515-30791553)
[»] chr2 (3 HSPs)
chr2 (166-382)||(40303396-40303622)
chr2 (166-382)||(45499408-45499634)
chr2 (321-357)||(28563643-28563679)
[»] chr8 (3 HSPs)
chr8 (167-290)||(1650040-1650164)
chr8 (318-357)||(31917243-31917282)
chr8 (320-357)||(41912765-41912802)
[»] chr4 (2 HSPs)
chr4 (294-357)||(10337341-10337405)
chr4 (321-357)||(54122094-54122130)
[»] chr1 (2 HSPs)
chr1 (318-357)||(19250918-19250957)
chr1 (318-357)||(19249582-19249621)
[»] chr6 (2 HSPs)
chr6 (321-357)||(1256981-1257017)
chr6 (321-357)||(8752556-8752592)


Alignment Details
Target: chr3 (Bit Score: 184; Significance: 2e-99; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 192 - 407
Target Start/End: Original strand, 29748014 - 29748229
Alignment:
Q  192 ttacaaaaacgcctaaatgtctaacgacagctgatgtggcgaagaatgacgcggcagaaacgcttatatgtcatgacagatgatctctgactatattact 291  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||| ||||||||||||||||| ||||||||||||||    
T  29748014 ttacaaaaacgcctaaatgtctaacgacagctgatgtggcgaagaatgatgcggtagaaacgtttatgtgtcatgacagatgatccctgactatattact 29748113  T
Q  292 ttaaccaaaaacgaaaaggtatgtgtacgaaattaaaaacacctaaatgacaaaatttgaaatttaagaccttgttatttccatcttcttcctatctatg 391  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  29748114 ttaatcaaaaacgaaaaggtatgtgtacgaaattaaaaacacctaaatgacaaaatttgaaatttaagaccttgttgtttccatcttcttcctctctatg 29748213  T
Q  392 ccatcttcttcatctc 407  Q
    ||||||||||||||||    
T  29748214 ccatcttcttcatctc 29748229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 19 - 149
Target Start/End: Original strand, 29747795 - 29747925
Alignment:
Q  19 gagatgagatggagaatagtgattcaggcaataagaaccttcgttacccttacatgctttcgattagccctaaaattagaaggaacaaatttgcatttac 118  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  29747795 gagatgagatggagaatagtgattcaggcaataagaaccttcgttacccttacatgctttcgattagctctaaaattagaaggaacaaattttcatttac 29747894  T
Q  119 gtaaaagagaatgtagaattgctcctaaaag 149  Q
    |||||||||||||||||||||||||||||||    
T  29747895 gtaaaagagaatgtagaattgctcctaaaag 29747925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 166 - 382
Target Start/End: Complemental strand, 40499208 - 40498982
Alignment:
Q  166 attttcgtccctccctttaacatctattacaaaaacgcctaaatgtctaacgacagctgatgtggcgaagaatgacgcggcagaaa-cgcttatatgtca 264  Q
    ||||||||||||||| | ||| ||  ||||||||||||||   ||||||||| | ||||| ||||| ||| |||| | |||| ||| ||||||| ||||     
T  40499208 attttcgtccctcccgtcaacttccgttacaaaaacgcctcgctgtctaacggcggctgacgtggcaaaggatgatgtggcaaaaaacgcttatgtgtcg 40499109  T
Q  265 tgacagatgatctctgactatattacttt------aaccaaaaacgaaaaggtatgt--gtacgaaattaaaaacacctaaatgacaaaatttgaaattt 356  Q
    |||||||||||| |||||||||||||         |||||||||||||||||||  |  | |||||||||||||||||||||| ||||||||||||||||    
T  40499108 tgacagatgatccctgactatattacagggaccaaaaccaaaaacgaaaaggtacatagggacgaaattaaaaacacctaaataacaaaatttgaaattt 40499009  T
Q  357 aaga-ccttgttatttccatcttcttc 382  Q
    || | ||||||| ||||||| ||||||    
T  40499008 aaaacccttgttgtttccatattcttc 40498982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 166 - 383
Target Start/End: Complemental strand, 48568486 - 48568259
Alignment:
Q  166 attttcgtccctccctttaacatctattacaaaaacgcctaaatgtctaacgacagctgatgtggcgaagaatgacgcggcagaaacg-cttatatgtca 264  Q
    ||||||||||||||| | ||| ||  ||||||||||||||   ||||||||||| | ||  ||||| ||| |||| | |||| |||   ||||| ||||     
T  48568486 attttcgtccctcccgtcaacttccgttacaaaaacgcctccctgtctaacgacggatgtcgtggcaaaggatgatgtggcaaaaaattcttatgtgtcg 48568387  T
Q  265 tgacagatgatctctgactatattacttt------aaccaaaaacgaaaaggtatgt--gtacgaaattaaaaacacctaaatgacaaaatttgaaattt 356  Q
    |||||||||||| |||||||||||||         |||||||||||||||||||  |  | |||||||||||||||||||||| ||||||||||||||||    
T  48568386 tgacagatgatccctgactatattacagggaccaaaaccaaaaacgaaaaggtacatagggacgaaattaaaaacacctaaataacaaaatttgaaattt 48568287  T
Q  357 aaga-ccttgttatttccatcttcttcc 383  Q
    || | ||||||| ||||||| |||||||    
T  48568286 aaaacccttgttgtttccatattcttcc 48568259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 166 - 382
Target Start/End: Complemental strand, 31796790 - 31796564
Alignment:
Q  166 attttcgtccctccctttaacatctattacaaaaacgcctaaatgtctaacgacagctgatgtggcgaagaatgacgcggcagaaa-cgcttatatgtca 264  Q
    ||||||||||||||| | ||| ||  |||||||||||||| | ||||||||| |  ||||  |||| ||| |||| | |||| ||| |||| || ||||     
T  31796790 attttcgtccctcccgtcaacttccgttacaaaaacgcctcactgtctaacggcgactgacatggcaaaggatgatgtggcaaaaaacgctgatgtgtcg 31796691  T
Q  265 tgacagatgatctctgactatattacttt------aaccaaaaacgaaaaggtatgt--gtacgaaattaaaaacacctaaatgacaaaatttgaaattt 356  Q
    |||||||||||| |||||||||||||         ||||||||| |||||||||  |  | ||||||||||||||| |||||| ||||||||||||||||    
T  31796690 tgacagatgatccctgactatattacagggaccaaaaccaaaaaggaaaaggtacatagggacgaaattaaaaacaactaaataacaaaatttgaaattt 31796591  T
Q  357 aaga-ccttgttatttccatcttcttc 382  Q
    || | ||||||||||||||| ||||||    
T  31796590 aaaacccttgttatttccatattcttc 31796564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 318 - 381
Target Start/End: Complemental strand, 41083066 - 41083002
Alignment:
Q  318 acgaaattaaaaacacctaaatgacaaaatttgaaatttaaga-ccttgttatttccatcttctt 381  Q
    |||||||||||||||||||||| |||||||||||||||||| | ||||||| ||||||| |||||    
T  41083066 acgaaattaaaaacacctaaataacaaaatttgaaatttaaaacccttgttgtttccatattctt 41083002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 249 - 290
Target Start/End: Complemental strand, 41083143 - 41083102
Alignment:
Q  249 aaacgcttatatgtcatgacagatgatctctgactatattac 290  Q
    |||||||||| |||| |||||||||||| |||||||||||||    
T  41083143 aaacgcttatgtgtcgtgacagatgatccctgactatattac 41083102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 69; Significance: 8e-31; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 166 - 382
Target Start/End: Original strand, 38624819 - 38625045
Alignment:
Q  166 attttcgtccctccctttaacatctattacaaaaacgcctaaatgtctaacgacagctgatgtggcgaagaatgacgcggcagaaa-cgcttatatgtca 264  Q
    ||||||||||||||| | ||| ||  ||||||||||||||   ||||||||| | ||||||||||| ||| |||| | |||| ||| ||||||| ||||     
T  38624819 attttcgtccctcccgtcaacttccgttacaaaaacgcctcgctgtctaacggcggctgatgtggcaaaggatgatgtggcaaaaaacgcttatgtgtcg 38624918  T
Q  265 tgacagatgatctctgactatatt------actttaaccaaaaacgaaaaggt--atgtgtacgaaattaaaaacacctaaatgacaaaatttgaaattt 356  Q
    ||||||||||||||||||||||||      ||   ||||||||||||||||||  ||  | |||||||||||||||||||||| ||||||||||||||||    
T  38624919 tgacagatgatctctgactatattacagggaccaaaaccaaaaacgaaaaggtacatagggacgaaattaaaaacacctaaataacaaaatttgaaattt 38625018  T
Q  357 aaga-ccttgttatttccatcttcttc 382  Q
    || | ||||||| ||||||| ||||||    
T  38625019 aaaacccttgttgtttccatattcttc 38625045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 166 - 358
Target Start/End: Complemental strand, 11772656 - 11772455
Alignment:
Q  166 attttcgtccctccctttaacatctattacaaaaacgcctaaatgtctaacgacagctgatgtggcgaagaatgacgcggcagaaa-cgcttatatgtca 264  Q
    ||||||||||||||  | ||| ||  |||||||| | ||| | ||||||||||| ||||| ||||| ||| |||| | |||| ||| ||||||| ||||     
T  11772656 attttcgtccctcctgtcaacttccgttacaaaagcacctcattgtctaacgacggctgacgtggcaaaggatgatgtggcaaaaaacgcttatgtgtcg 11772557  T
Q  265 tgacagatgatctctgactatattacttt------aaccaaaaacgaaaaggtatgt--gtacgaaattaaaaacacctaaatgacaaaatttgaaattt 356  Q
    |||||||||||| |||||||||||||         |||||||||||||||||||  |  | |||||||||||||||||||||| ||||||||||||||||    
T  11772556 tgacagatgatccctgactatattacagggaccaaaaccaaaaacgaaaaggtacataggcacgaaattaaaaacacctaaataacaaaatttgaaattt 11772457  T
Q  357 aa 358  Q
    ||    
T  11772456 aa 11772455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 318 - 379
Target Start/End: Complemental strand, 17553306 - 17553244
Alignment:
Q  318 acgaaattaaaaacacctaaatgacaaaatttgaaatttaagac-cttgttatttccatcttc 379  Q
    |||||||||||||||||||||| |||||||||||||||||| || |||||| |||||| ||||    
T  17553306 acgaaattaaaaacacctaaataacaaaatttgaaatttaaaactcttgttgtttccaccttc 17553244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 357
Target Start/End: Original strand, 12251204 - 12251241
Alignment:
Q  320 gaaattaaaaacacctaaatgacaaaatttgaaattta 357  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  12251204 gaaattaaaaacacataaataacaaaatttgaaattta 12251241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 5e-26; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 166 - 382
Target Start/End: Original strand, 46245225 - 46245451
Alignment:
Q  166 attttcgtccctccctttaacatctattacaaaaacgcctaaatgtctaacgacagctgatgtggcgaagaatgacgcggcagaaa-cgcttatatgtca 264  Q
    ||||||||||||||| | ||| ||  ||||||||||||||   ||||||||| | ||||| ||||| ||| |||| | |||| ||| ||||||| ||||     
T  46245225 attttcgtccctcccgtcaacttccgttacaaaaacgcctcgctgtctaacggcggctgacgtggcaaaggatgatgtggcaaaaaacgcttatgtgtcg 46245324  T
Q  265 tgacagatgatctctgactatattacttt------aaccaaaaacgaaaaggtatgt--gtacgaaattaaaaacacctaaatgacaaaatttgaaattt 356  Q
    |||||||||||| |||||||||||||         |||||||||||||||||||  |  | |||||||||||||||||||||| ||||||||||||||||    
T  46245325 tgacagatgatccctgactatattacagggaccaaaaccaaaaacgaaaaggtacatagggacgaaattaaaaacacctaaataacaaaatttgaaattt 46245424  T
Q  357 aaga-ccttgttatttccatcttcttc 382  Q
    || | ||||||| ||||||| ||||||    
T  46245425 aaaacccttgttgtttccatattcttc 46245451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 192 - 384
Target Start/End: Original strand, 11747521 - 11747717
Alignment:
Q  192 ttacaaaaacgcctaaatgtctaacgacagctgatgtggcgaagaatgacgcggcagaaa-cgcttatatgtcatgacagatgatctctgactatattac 290  Q
    ||||||||||||| || ||||||||| | ||||| ||||||||  |||| | |||| ||| ||||||| |||| |||||||||||| || ||||||||||    
T  11747521 ttacaaaaacgccaaagtgtctaacggcggctgacgtggcgaatgatgatgtggcaaaaaccgcttatgtgtcgtgacagatgatccctaactatattac 11747620  T
Q  291 tttaaccaaaaacgaaaaggt--atgtgtacgaaattaaaaacacctaaatgacaaaatttgaaatttaagacc-ttgttatttccatcttcttcct 384  Q
        ||||||||||||||| |  |   | || ||||||||||||| ||||| ||||||||| |||||||| ||| ||||| ||||||||||||||||    
T  11747621 agggaccaaaaacgaaaagatacagagggacaaaattaaaaacacataaataacaaaatttaaaatttaaaacctttgttgtttccatcttcttcct 11747717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 166 - 384
Target Start/End: Original strand, 15135481 - 15135709
Alignment:
Q  166 attttcgtccctccctttaacatctattacaaaaacgcctaaatgtctaacgacagctgatgtggcgaagaatgacgcggcagaaacg-cttatatgtca 264  Q
    ||||||||||||||| | ||| | | ||||||||||||| || ||||||||| | ||||| ||||||||| |||| | |||| ||| | ||||| ||||     
T  15135481 attttcgtccctcccgtcaacttttgttacaaaaacgccaaagtgtctaacggcggctgacgtggcgaaggatgatgtggcaaaaaagtcttatgtgtcg 15135580  T
Q  265 tgacagatgatctctgactatattacttt------aaccaaaaacgaaaaggtat---gtgtacgaaattaaaaacacctaaatgacaaaatttgaaatt 355  Q
    ||||| ||||||  | ||||||||||         |||||||||||||||||||    ||| |||||||||||||||| ||||| |||||||||||||||    
T  15135581 tgacaaatgatccttaactatattacaaggaccaaaaccaaaaacgaaaaggtacaaagtg-acgaaattaaaaacacataaataacaaaatttgaaatt 15135679  T
Q  356 taagac-cttgttatttccatcttcttcct 384  Q
    ||| || |||| | ||||||||||||||||    
T  15135680 taaaactcttgctgtttccatcttcttcct 15135709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 319 - 383
Target Start/End: Complemental strand, 31734549 - 31734484
Alignment:
Q  319 cgaaattaaaaacacctaaatgacaaaatttgaaatttaaga-ccttgttatttccatcttcttcc 383  Q
    ||||||||||||||||||||| |||||||||||||||||| | ||||||| |||||||||||||||    
T  31734549 cgaaattaaaaacacctaaataacaaaatttgaaatttaaaacccttgttgtttccatcttcttcc 31734484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 196 - 290
Target Start/End: Original strand, 37131969 - 37132063
Alignment:
Q  196 aaaaacgcctaaatgtctaacgacagctgatgtggcgaagaatgacgcggcagaaacgcttatatgtcatgacagatgatctctgactatattac 290  Q
    |||||||||||  ||||||||| | | ||| ||||||||| |||||  |||| |||||||||| |||| |||||||||||| || ||||||||||    
T  37131969 aaaaacgcctacgtgtctaacggccgttgacgtggcgaaggatgacatggcaaaaacgcttatgtgtcgtgacagatgatccctaactatattac 37132063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 14780683 - 14780740
Alignment:
Q  318 acgaaattaaaaacacctaaatgacaaaatttgaaatttaaga-ccttgttatttcca 374  Q
    |||||||||||||||||||||| ||||||||| |||||||| | ||||||| ||||||    
T  14780683 acgaaattaaaaacacctaaataacaaaatttaaaatttaaaacccttgttgtttcca 14780740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 318 - 374
Target Start/End: Original strand, 15230702 - 15230759
Alignment:
Q  318 acgaaattaaaaacacctaaatgacaaaatttgaaatttaaga-ccttgttatttcca 374  Q
    |||||||||||||||||||||| ||||||||| |||||||| | ||||||| ||||||    
T  15230702 acgaaattaaaaacacctaaataacaaaatttaaaatttaaaacccttgttgtttcca 15230759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 318 - 358
Target Start/End: Original strand, 37132099 - 37132139
Alignment:
Q  318 acgaaattaaaaacacctaaatgacaaaatttgaaatttaa 358  Q
    |||||||||||||||||||||| ||||||||||||| ||||    
T  37132099 acgaaattaaaaacacctaaataacaaaatttgaaaattaa 37132139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 321 - 359
Target Start/End: Original strand, 30791515 - 30791553
Alignment:
Q  321 aaattaaaaacacctaaatgacaaaatttgaaatttaag 359  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  30791515 aaattaaaaaaacctaaataacaaaatttgaaatttaag 30791553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 166 - 382
Target Start/End: Original strand, 40303396 - 40303622
Alignment:
Q  166 attttcgtccctccctttaacatctattacaaaaacgcctaaatgtctaacgacagctgatgtggcgaagaatgacgcggcagaaa-cgcttatatgtca 264  Q
    ||||||||||||||| | ||| ||  |||||||||||||| | ||||||||| |  ||||  |||| ||| |||| | |||| ||| ||||||| ||||     
T  40303396 attttcgtccctcccgtcaacttccgttacaaaaacgcctcactgtctaacggcgactgacatggcaaaggatgatgtggcaaaaaacgcttatgtgtcg 40303495  T
Q  265 tgacagatgatctctgactatattacttt------aaccaaaaacgaaaaggtatgt--gtacgaaattaaaaacacctaaatgacaaaatttgaaattt 356  Q
    |||||||||||| |||||||||||||         ||||||||| |||||||||  |  | |||||||||||||||||||||| ||||||||||||||||    
T  40303496 tgacagatgatccctgactatattacagggaccaaaaccaaaaaggaaaaggtacatagggacgaaattaaaaacacctaaataacaaaatttgaaattt 40303595  T
Q  357 aaga-ccttgttatttccatcttcttc 382  Q
    || | ||||||| ||||||| ||||||    
T  40303596 aaaacccttgttgtttccatattcttc 40303622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 166 - 382
Target Start/End: Original strand, 45499408 - 45499634
Alignment:
Q  166 attttcgtccctccctttaacatctattacaaaaacgcctaaatgtctaacgacagctgatgtggcgaagaatgacgcggcagaaa-cgcttatatgtca 264  Q
    ||||||||||||||| | ||| ||  |||||||||||||| | ||||||||| |  ||||  |||| ||| |||| | |||| ||| ||||||| ||||     
T  45499408 attttcgtccctcccgtcaacttccgttacaaaaacgcctcactgtctaacggcgactgacatggcaaaggatgatgtggcaaaaaacgcttatgtgtcg 45499507  T
Q  265 tgacagatgatctctgactatattacttt------aaccaaaaacgaaaaggtatgt--gtacgaaattaaaaacacctaaatgacaaaatttgaaattt 356  Q
    |||||||||||| |||||||||||||         ||||||||| |||||||||  |  | |||||||||||||||||||||| ||||||||||||||||    
T  45499508 tgacagatgatccctgactatattacagggaccaaaaccaaaaaggaaaaggtacatagggacgaaattaaaaacacctaaataacaaaatttgaaattt 45499607  T
Q  357 aaga-ccttgttatttccatcttcttc 382  Q
    || | ||||||| ||||||| ||||||    
T  45499608 aaaacccttgttgtttccatattcttc 45499634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 28563643 - 28563679
Alignment:
Q  321 aaattaaaaacacctaaatgacaaaatttgaaattta 357  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  28563643 aaattaaaaacacctaaataacaaaatatgaaattta 28563679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 167 - 290
Target Start/End: Complemental strand, 1650164 - 1650040
Alignment:
Q  167 ttttcgtccctccctttaacatctattacaaaaacgcctaaatgtctaacgacagctgatgtggcgaagaatgacgcggcagaa-acgcttatatgtcat 265  Q
    ||||||||||||   | ||| ||| |||||||||| ||||  ||||||||| | ||||||| |||||||||||| | |||| || ||  |||| |||| |    
T  1650164 ttttcgtccctcatgtcaacttctgttacaaaaacacctacgtgtctaacggccgctgatgcggcgaagaatgatgtggcaaaatacatttatgtgtcgt 1650065  T
Q  266 gacagatgatctctgactatattac 290  Q
    |||||||||||||| ||||||||||    
T  1650064 gacagatgatctctaactatattac 1650040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 357
Target Start/End: Original strand, 31917243 - 31917282
Alignment:
Q  318 acgaaattaaaaacacctaaatgacaaaatttgaaattta 357  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  31917243 acgaaattaaaaacacctaaataacaaaatttgaaattta 31917282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 320 - 357
Target Start/End: Original strand, 41912765 - 41912802
Alignment:
Q  320 gaaattaaaaacacctaaatgacaaaatttgaaattta 357  Q
    |||||||||||||||| ||| |||||||||||||||||    
T  41912765 gaaattaaaaacaccttaataacaaaatttgaaattta 41912802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 294 - 357
Target Start/End: Original strand, 10337341 - 10337405
Alignment:
Q  294 aaccaaaaacgaaaaggtat-gtgtacgaaattaaaaacacctaaatgacaaaatttgaaattta 357  Q
    |||||||||||||||||||| | | || ||||||||||||||||||| ||||||| |||||||||    
T  10337341 aaccaaaaacgaaaaggtatagaggacaaaattaaaaacacctaaataacaaaatatgaaattta 10337405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 54122094 - 54122130
Alignment:
Q  321 aaattaaaaacacctaaatgacaaaatttgaaattta 357  Q
    ||||||||||||||||||| | |||||||||||||||    
T  54122094 aaattaaaaacacctaaataataaaatttgaaattta 54122130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 318 - 357
Target Start/End: Complemental strand, 19250957 - 19250918
Alignment:
Q  318 acgaaattaaaaacacctaaatgacaaaatttgaaattta 357  Q
    |||||||||||||||||||||| |||||||||||||||||    
T  19250957 acgaaattaaaaacacctaaataacaaaatttgaaattta 19250918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 318 - 357
Target Start/End: Original strand, 19249582 - 19249621
Alignment:
Q  318 acgaaattaaaaacacctaaatgacaaaatttgaaattta 357  Q
    |||||||||||||||||||||  |||||||||||||||||    
T  19249582 acgaaattaaaaacacctaaacaacaaaatttgaaattta 19249621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 357
Target Start/End: Original strand, 1256981 - 1257017
Alignment:
Q  321 aaattaaaaacacctaaatgacaaaatttgaaattta 357  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  1256981 aaattaaaaacacctaaataacaaaatatgaaattta 1257017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 321 - 357
Target Start/End: Complemental strand, 8752592 - 8752556
Alignment:
Q  321 aaattaaaaacacctaaatgacaaaatttgaaattta 357  Q
    ||||||||||||||||||| ||||||| |||||||||    
T  8752592 aaattaaaaacacctaaataacaaaatatgaaattta 8752556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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