View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14922_low_8 (Length: 410)
Name: NF14922_low_8
Description: NF14922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14922_low_8 |
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| [»] chr5 (1 HSPs) |
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| [»] chr6 (2 HSPs) |
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| [»] scaffold0047 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 232 - 410
Target Start/End: Complemental strand, 9262308 - 9262131
Alignment:
| Q |
232 |
tgttcaaactgatgcctatttaatttaaatagtagacatatatttgcatcttaattattgacaactaaattgtgatagttgggcttttctgttgtggtgg |
331 |
Q |
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| T |
9262308 |
tgtttaaacttatgcctatttaatgtacatgatagacatatatttgcatcttaattattgacaactaaattgtgatagtt-ggcctttctgttgtggtgg |
9262210 |
T |
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| Q |
332 |
aagtcactgtataagtgcatatatatgtatcatttattagtgccttaggtgctaagaaaagttattgattgaagtgttt |
410 |
Q |
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| T |
9262209 |
aagtcactatatgagtgtgtgtatatgtatcatatattagctccttaggcgctaataaaagttattgattaaagtgttt |
9262131 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 95; Significance: 2e-46; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 232 - 410
Target Start/End: Complemental strand, 2313184 - 2313007
Alignment:
| Q |
232 |
tgttcaaactgatgcctatttaatttaaatagtagacatatatttgcatcttaattattgacaactaaattgtgatagttgggcttttctgttgtggtgg |
331 |
Q |
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| T |
2313184 |
tgtttaaacttatgcctatttaatgtacatgatagacatatatttgcatcttaattattgacaactaaattgtgatagtt-ggcctttctgttgtggtgg |
2313086 |
T |
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| Q |
332 |
aagtcactgtataagtgcatatatatgtatcatttattagtgccttaggtgctaagaaaagttattgattgaagtgttt |
410 |
Q |
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| T |
2313085 |
aagtcactatatgagtgtgtgtgtatgtatcatatattagctccttaggcgctaataaaagttattgattaaagtgttt |
2313007 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 129 - 203
Target Start/End: Complemental strand, 30833724 - 30833652
Alignment:
| Q |
129 |
aagtctttaacttaataatccttcttttttatctcttttgcagaattgttgtctttcttggttgccatttgatta |
203 |
Q |
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| T |
30833724 |
aagtctttaacttaataacccttttttttt--ctcctatgcaagattgttgtctttcttggttgccatttgatta |
30833652 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 209 - 298
Target Start/End: Complemental strand, 18851849 - 18851760
Alignment:
| Q |
209 |
aaattctaggatagaacaagatgtgttcaaactgatgcctatttaatttaaatagtagacatatatttgcatcttaattattgacaacta |
298 |
Q |
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| T |
18851849 |
aaattctaggatagagcaagatgtgttcaaactgatgcctatttaatgtacataatagacatatatttgcatcttaattattgacaacta |
18851760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 71; Significance: 5e-32; HSPs: 2)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 210 - 312
Target Start/End: Complemental strand, 60991 - 60889
Alignment:
| Q |
210 |
aattctaggatagaacaagatgtgttcaaactgatgcctatttaatttaaatagtagacatatatttgcatcttaattattgacaactaaattgtgatag |
309 |
Q |
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| T |
60991 |
aattataggatagagcaagatgtgttgaaactgatgcatatttaatgtacataatagacatatatttccatcttaattattgacaactaaattgtgatag |
60892 |
T |
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| Q |
310 |
ttg |
312 |
Q |
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| T |
60891 |
ttg |
60889 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 345 - 400
Target Start/End: Complemental strand, 60849 - 60794
Alignment:
| Q |
345 |
agtgcatatatatgtatcatttattagtgccttaggtgctaagaaaagttattgat |
400 |
Q |
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| T |
60849 |
agtgtatatatacgtatcatatatcagttccttaggtgctaataaaagttattgat |
60794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 4411498 - 4411538
Alignment:
| Q |
74 |
tttcaccacccatgttctttttgggttacaaatgcgtgttt |
114 |
Q |
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| T |
4411498 |
tttcaccactcatgttctttttgggttacaaatgtgtgttt |
4411538 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 6744016 - 6744058
Alignment:
| Q |
72 |
actttcaccacccatgttctttttgggttacaaatgcgtgttt |
114 |
Q |
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| T |
6744016 |
actttcaccactcatgttctttttgagttacaaatgtgtgttt |
6744058 |
T |
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