View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14922_low_9 (Length: 397)
Name: NF14922_low_9
Description: NF14922
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14922_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 372; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 372; E-Value: 0
Query Start/End: Original strand, 1 - 384
Target Start/End: Original strand, 10992641 - 10993024
Alignment:
| Q |
1 |
actaccaaaacacacaaaaaattcataaacctgactataatgcctcaaatgcttcttcttatgcatgttataaatcatctgagtagaaagtccgcctcta |
100 |
Q |
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| T |
10992641 |
actaccaaaacacacaaaaaattcataaacctgactataatgcctcaaatgcttcttcttatgcatgttataaatcatctgagtagaaagtccgcctcta |
10992740 |
T |
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| Q |
101 |
ctaagcaaattcctgccaaaaatcctaaacatcggcctacatccattagatgagtcaaagctaggaattcccctaagtataacacaatccaaagacaatg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10992741 |
ctaagcaaattcctgccaaaaatcctaaacatcggcctacatccattagatgaatcaaagctaggaattcccctaagtataacacaatccaaagacaatg |
10992840 |
T |
|
| Q |
201 |
ctctctcaggaggaggccactccggcgcaatgttcctcctcgcaacatattgaatataccgaagctgtgaaggctgtggattcaaaggtgacaacaactg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10992841 |
ctctctcaggaggaggccactccggcgcaatgttcctcctcgcaacatattgaatataccgaagctgtgaaggctgtggattcaaaggtgacaacaactg |
10992940 |
T |
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| Q |
301 |
caacaatcccttgggtgcttctctatgaaccatttcaagtgtcctacgttcaccactatgaacccttctaaaaatcaacaaact |
384 |
Q |
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| T |
10992941 |
caacaaacccttaggtgcttctctatgaaccatttcaagtgtcctacgttcaccactatgaacccttctaaaaatcaacaaact |
10993024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 10992604 - 10992640
Alignment:
| Q |
1 |
actaccaaaacacacaaaaaattcataaacctgacta |
37 |
Q |
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||||||||||||||||||||||||||||| ||||||| |
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| T |
10992604 |
actaccaaaacacacaaaaaattcataaatctgacta |
10992640 |
T |
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