View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14923_high_2 (Length: 370)

Name: NF14923_high_2
Description: NF14923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14923_high_2
NF14923_high_2
[»] chr6 (6 HSPs)
chr6 (15-347)||(11378678-11379014)
chr6 (171-226)||(16260662-16260717)
chr6 (171-229)||(8051014-8051072)
chr6 (171-229)||(26296245-26296303)
chr6 (186-227)||(862883-862924)
chr6 (171-223)||(31159123-31159175)
[»] chr5 (1 HSPs)
chr5 (171-229)||(32522574-32522632)
[»] chr1 (5 HSPs)
chr1 (168-226)||(49166651-49166709)
chr1 (171-226)||(8900833-8900888)
chr1 (171-226)||(32804291-32804346)
chr1 (171-225)||(5347008-5347062)
chr1 (195-227)||(39969805-39969837)
[»] chr8 (1 HSPs)
chr8 (171-227)||(24185570-24185626)
[»] chr7 (2 HSPs)
chr7 (171-226)||(2399739-2399794)
chr7 (171-227)||(21955381-21955436)
[»] chr2 (3 HSPs)
chr2 (171-230)||(12801085-12801144)
chr2 (171-227)||(11565039-11565095)
chr2 (171-223)||(33956332-33956384)
[»] chr4 (1 HSPs)
chr4 (168-226)||(52840307-52840364)


Alignment Details
Target: chr6 (Bit Score: 287; Significance: 1e-161; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 15 - 347
Target Start/End: Complemental strand, 11379014 - 11378678
Alignment:
Q  15 atcattttaaataacatgtatcataccagtattgtattaagtttagtgttagattattagtcatcagtgaaaactctg---ggttcttcatttttgttgt 111  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||     
T  11379014 atcattttaaataacatgtatcataccagtattgtattaagtttagtgttagattattagtcatcagtgaaaactctgataggttcttcatttttgttgc 11378915  T
Q  112 taattaaagtgattatattcattgttgaaactaaaatctgatgatggg-tacatctcttaaataattaatgtactcagtcacatttataaattagataca 210  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11378914 taattaaagtgattatattcattgttgaaactcaaatctgatgatggggtacatctcttaaataattaatgtactcagtcacatttataaattagataca 11378815  T
Q  211 tgaattattcaatgtattttacattgaataattaatctaccctctcacatttacaaattagatacatttataagttagatacatgaccaaagggagtatg 310  Q
    ||||||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  11378814 tgaattattcaatgtatcttacattgaataattaatgtaccctgtcacatttacaaattagatacatttataagttagataaatgaccaaagggagtatg 11378715  T
Q  311 tttttcattgacatgttcacatcacagtatctatgat 347  Q
    ||||||||||||||||||||||||||||| |||||||    
T  11378714 tttttcattgacatgttcacatcacagtacctatgat 11378678  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 16260717 - 16260662
Alignment:
Q  171 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgta 226  Q
    ||||||||||||| |||||||||||||||  ||||| |||| ||||||||||||||    
T  16260717 aataattaatgtattcagtcacatttataggttagagacattaattattcaatgta 16260662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 8051072 - 8051014
Alignment:
Q  171 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgtattt 229  Q
    ||||||||||||| | | ||||||||||| |||| |||||| ||||||||||| |||||    
T  8051072 aataattaatgtatttaatcacatttatagattatatacattaattattcaatatattt 8051014  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 26296303 - 26296245
Alignment:
Q  171 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgtattt 229  Q
    ||||||||| |||  |||||||||||||| |||| |||||| ||||||| |||||||||    
T  26296303 aataattaacgtatacagtcacatttatagattaaatacattaattatttaatgtattt 26296245  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 227
Target Start/End: Original strand, 862883 - 862924
Alignment:
Q  186 cagtcacatttataaattagatacatgaattattcaatgtat 227  Q
    ||||||||||||||  |||||||||| |||||||||||||||    
T  862883 cagtcacatttataggttagatacattaattattcaatgtat 862924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 31159123 - 31159175
Alignment:
Q  171 aataattaatgtactcagtcacatttataaattagatacatgaattattcaat 223  Q
    ||||||||||||| || ||||||||||||  |||||||||| | |||||||||    
T  31159123 aataattaatgtattcggtcacatttatatgttagatacattagttattcaat 31159175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 171 - 229
Target Start/End: Original strand, 32522574 - 32522632
Alignment:
Q  171 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgtattt 229  Q
    |||||||||||||  |||||||||||||| || |||||||| |||||||||||||||||    
T  32522574 aataattaatgtatgcagtcacatttatagatcagatacattaattattcaatgtattt 32522632  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 49166651 - 49166709
Alignment:
Q  168 ttaaataattaatgtactcagtcacatttataaattagatacatgaattattcaatgta 226  Q
    ||||||||||||||||  ||||||||||||||  |||||||||| ||||||||||||||    
T  49166651 ttaaataattaatgtatccagtcacatttataggttagatacattaattattcaatgta 49166709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 8900888 - 8900833
Alignment:
Q  171 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgta 226  Q
    |||||||||||||  | ||||||||||||  |||||||||| ||||||||||||||    
T  8900888 aataattaatgtatccggtcacatttataggttagatacattaattattcaatgta 8900833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 226
Target Start/End: Original strand, 32804291 - 32804346
Alignment:
Q  171 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgta 226  Q
    ||||||||||||| |||||||||||||||   ||||||||| ||| ||||||||||    
T  32804291 aataattaatgtattcagtcacatttatatgatagatacattaatgattcaatgta 32804346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 5347008 - 5347062
Alignment:
Q  171 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgt 225  Q
    |||||||||||||  || ||||||||||| |||||||| || |||||||||||||    
T  5347008 aataattaatgtatccattcacatttatatattagatatattaattattcaatgt 5347062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 195 - 227
Target Start/End: Complemental strand, 39969837 - 39969805
Alignment:
Q  195 ttataaattagatacatgaattattcaatgtat 227  Q
    ||||||||||||||||| |||||||||||||||    
T  39969837 ttataaattagatacatcaattattcaatgtat 39969805  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 24185626 - 24185570
Alignment:
Q  171 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgtat 227  Q
    |||||||||||||  ||||||||||||||  ||||||| || |||||||||||||||    
T  24185626 aataattaatgtatccagtcacatttataggttagatatattaattattcaatgtat 24185570  T

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Target: chr7 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 2399794 - 2399739
Alignment:
Q  171 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgta 226  Q
    |||||||||||||  | ||||||||||||| |||||||||| || |||||||||||    
T  2399794 aataattaatgtatccggtcacatttataagttagatacattaactattcaatgta 2399739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 227
Target Start/End: Original strand, 21955381 - 21955436
Alignment:
Q  171 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgtat 227  Q
    |||||||||||||  ||||||||||||||  | |||||||| |||||||||||||||    
T  21955381 aataattaatgtatccagtcacatttatatgtcagatacat-aattattcaatgtat 21955436  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 171 - 230
Target Start/End: Complemental strand, 12801144 - 12801085
Alignment:
Q  171 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgtatttt 230  Q
    |||||||||| || | ||||||||||||| |||| |||||| |||||||||||| |||||    
T  12801144 aataattaatatatttagtcacatttatagattaaatacattaattattcaatgaatttt 12801085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 227
Target Start/End: Complemental strand, 11565095 - 11565039
Alignment:
Q  171 aataattaatgtactcagtcacatttataaattagatacatgaattattcaatgtat 227  Q
    |||| ||||||||  |||||||||||||| || || ||||| |||||||||||||||    
T  11565095 aatatttaatgtatccagtcacatttatagatcaggtacattaattattcaatgtat 11565039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 171 - 223
Target Start/End: Original strand, 33956332 - 33956384
Alignment:
Q  171 aataattaatgtactcagtcacatttataaattagatacatgaattattcaat 223  Q
    |||||||||||||  | |||| |||||||| |||||||||| |||||||||||    
T  33956332 aataattaatgtatccggtcatatttataagttagatacattaattattcaat 33956384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 226
Target Start/End: Complemental strand, 52840364 - 52840307
Alignment:
Q  168 ttaaataattaatgtactcagtcacatttataaattagatacatgaattattcaatgta 226  Q
    |||||||||||||||| || ||||||||||||  |||||||||| ||||||| ||||||    
T  52840364 ttaaataattaatgta-tcggtcacatttatatgttagatacattaattatttaatgta 52840307  T

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