View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14923_high_3 (Length: 369)

Name: NF14923_high_3
Description: NF14923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14923_high_3
NF14923_high_3
[»] chr3 (13 HSPs)
chr3 (7-355)||(44661795-44662147)
chr3 (23-108)||(17144595-17144680)
chr3 (62-217)||(38651902-38652059)
chr3 (31-172)||(22472960-22473104)
chr3 (51-109)||(25465928-25465986)
chr3 (51-109)||(44651086-44651144)
chr3 (20-109)||(2832256-2832345)
chr3 (51-104)||(26758356-26758409)
chr3 (51-175)||(4554752-4554876)
chr3 (51-109)||(8557851-8557909)
chr3 (50-108)||(25858317-25858374)
chr3 (51-109)||(38680934-38680992)
chr3 (55-108)||(27054202-27054255)
[»] chr1 (18 HSPs)
chr1 (22-206)||(10847400-10847586)
chr1 (51-172)||(32910266-32910387)
chr1 (32-109)||(15880029-15880106)
chr1 (51-173)||(35980175-35980297)
chr1 (19-175)||(8268702-8268858)
chr1 (43-109)||(36797926-36797993)
chr1 (51-109)||(6694270-6694328)
chr1 (51-109)||(19051234-19051292)
chr1 (51-109)||(26344950-26345008)
chr1 (29-109)||(15882029-15882109)
chr1 (51-175)||(35992498-35992622)
chr1 (51-109)||(17989179-17989237)
chr1 (19-109)||(39158189-39158279)
chr1 (19-91)||(16537705-16537777)
chr1 (50-102)||(32937980-32938032)
chr1 (21-175)||(36203304-36203459)
chr1 (51-109)||(12973691-12973749)
chr1 (51-109)||(40095313-40095371)
[»] chr2 (8 HSPs)
chr2 (29-165)||(17762813-17762950)
chr2 (33-175)||(1331066-1331207)
chr2 (29-175)||(28790567-28790713)
chr2 (119-175)||(15320549-15320605)
chr2 (51-105)||(24725698-24725752)
chr2 (19-109)||(30759503-30759593)
chr2 (19-104)||(30761618-30761703)
chr2 (51-104)||(44085615-44085668)
[»] chr7 (19 HSPs)
chr7 (51-216)||(8118183-8118349)
chr7 (19-109)||(23032806-23032896)
chr7 (20-109)||(47483744-47483833)
chr7 (51-109)||(6879998-6880056)
chr7 (20-109)||(26524807-26524896)
chr7 (28-109)||(43202558-43202639)
chr7 (30-90)||(20306748-20306808)
chr7 (19-90)||(2734479-2734550)
chr7 (50-109)||(40848983-40849042)
chr7 (19-109)||(26214972-26215062)
chr7 (52-108)||(7697412-7697468)
chr7 (19-175)||(11399185-11399339)
chr7 (19-109)||(21237644-21237735)
chr7 (51-109)||(11834366-11834424)
chr7 (51-109)||(30079486-30079544)
chr7 (51-109)||(31287667-31287725)
chr7 (51-109)||(35819974-35820032)
chr7 (51-109)||(37375450-37375508)
chr7 (60-109)||(31012966-31013014)
[»] chr6 (10 HSPs)
chr6 (51-171)||(892233-892352)
chr6 (32-104)||(13859264-13859336)
chr6 (51-109)||(11417192-11417250)
chr6 (20-216)||(8064509-8064702)
chr6 (50-109)||(20500683-20500742)
chr6 (51-108)||(7169984-7170041)
chr6 (19-108)||(7676216-7676305)
chr6 (118-176)||(14940542-14940599)
chr6 (43-109)||(19134997-19135063)
chr6 (60-109)||(12108469-12108518)
[»] chr8 (12 HSPs)
chr8 (29-109)||(3129440-3129520)
chr8 (51-109)||(11017134-11017192)
chr8 (51-109)||(37162550-37162608)
chr8 (50-109)||(12912616-12912675)
chr8 (43-109)||(38926320-38926386)
chr8 (19-86)||(44336916-44336983)
chr8 (47-109)||(19539519-19539581)
chr8 (51-109)||(36340648-36340706)
chr8 (51-88)||(12193364-12193401)
chr8 (51-88)||(12437792-12437829)
chr8 (29-109)||(12074064-12074144)
chr8 (60-104)||(18755237-18755281)
[»] chr5 (22 HSPs)
chr5 (19-90)||(6718734-6718805)
chr5 (29-109)||(12263989-12264068)
chr5 (51-109)||(691454-691513)
chr5 (51-175)||(27571938-27572061)
chr5 (55-109)||(6633446-6633500)
chr5 (51-109)||(11402721-11402779)
chr5 (51-109)||(25495213-25495271)
chr5 (51-109)||(33792795-33792853)
chr5 (19-88)||(6894280-6894349)
chr5 (32-109)||(26007251-26007328)
chr5 (44-104)||(563797-563857)
chr5 (60-108)||(10090376-10090424)
chr5 (51-175)||(14652514-14652639)
chr5 (20-75)||(20191811-20191866)
chr5 (51-109)||(7591458-7591515)
chr5 (51-109)||(41454996-41455054)
chr5 (20-109)||(18845640-18845729)
chr5 (55-104)||(36567843-36567892)
chr5 (51-107)||(17131978-17132034)
chr5 (33-109)||(22553493-22553569)
chr5 (51-91)||(26690008-26690048)
chr5 (51-91)||(26959740-26959780)
[»] chr4 (15 HSPs)
chr4 (20-90)||(18881911-18881981)
chr4 (60-175)||(48602431-48602545)
chr4 (51-175)||(23120148-23120273)
chr4 (51-109)||(8484795-8484854)
chr4 (43-109)||(4688803-4688869)
chr4 (51-109)||(8312015-8312073)
chr4 (29-75)||(40494579-40494625)
chr4 (51-109)||(42198910-42198968)
chr4 (51-108)||(23625801-23625858)
chr4 (51-175)||(15723948-15724073)
chr4 (29-109)||(51907194-51907274)
chr4 (19-109)||(17845014-17845104)
chr4 (51-109)||(21069178-21069236)
chr4 (19-109)||(48338468-48338556)
chr4 (55-104)||(49640973-49641022)
[»] scaffold0688 (2 HSPs)
scaffold0688 (20-109)||(1290-1378)
scaffold0688 (20-109)||(7859-7947)
[»] scaffold0204 (1 HSPs)
scaffold0204 (19-109)||(25990-26078)
[»] scaffold0015 (1 HSPs)
scaffold0015 (51-109)||(62536-62594)


Alignment Details
Target: chr3 (Bit Score: 265; Significance: 1e-148; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 7 - 355
Target Start/End: Complemental strand, 44662147 - 44661795
Alignment:
Q  7 tgaaaagaaaccgtaatgttaaatgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaa 106  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  44662147 tgaaaagaaactgtaatgttaaatgaaatttaaattattgttggaaacattgctgaaaatatgctgtgtattaactttttaactttcttttaatgttgaa 44662048  T
Q  107 aacnnnnnnntttattgtctcggaaaaaaccgcaccgaccaatccaacacaaaccaca--tttgtttggttcatat--tattttgaatgtcaaacgaaac 202  Q
    |||       ||||||| ||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||  ||||||||||||||||||||||    
T  44662047 aacaaaaaaatttattgactcggaaaaaaccgcaccgaccaatccaacacaaaccacacatttgtttggttcatatattattttgaatgtcaaacgaaac 44661948  T
Q  203 aaactaaaccacatannnnnnnatcatgcagttcggataacttatagtctcaaaatcgaactaaacccacatcataaacaccctaatccatagtgcccat 302  Q
    |||| |||| |||||       ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  44661947 aaaccaaactacatatttttttatcatgcagttcggataacttatagtctcaaaatcgaactaaaccaacatcataaacaccctaatccatagtgcccat 44661848  T
Q  303 gttttctttgaaatacggaaacctaaagcttccttgaaatggcgagacttttg 355  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44661847 gttttctttgaaatacggaaacctaaagcttccttgaaatggcgagacttttg 44661795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 23 - 108
Target Start/End: Original strand, 17144595 - 17144680
Alignment:
Q  23 tgttaaatgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaa 108  Q
    |||| |||||||||||||  |||||||||||||| |||||||||||||||||| |||  ||||||||||  |||| ||||||||||    
T  17144595 tgttgaatgaaatttaaaacattgttggaaacatggctgaaaatatgttgtgttttagttttttaacttgattttgatgttgaaaa 17144680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 62 - 217
Target Start/End: Original strand, 38651902 - 38652059
Alignment:
Q  62 aaaatatgttgtgtattaactttttaactttcttttaatgttgaaaacnnnnnnntttattgtctcggaaaaaaccgcaccgaccaatccaacacaaacc 161  Q
    |||||||||||||| ||||||||||||| |  |||||| |||| ||||        ||| ||||||||||||||||||| | ||| ||||||| ||||||    
T  38651902 aaaatatgttgtgttttaactttttaacctgattttaacgttggaaacaaaaaaaattaatgtctcggaaaaaaccgcatcaaccgatccaacccaaacc 38652001  T
Q  162 acatttgtttggtt--catattattttgaatgtcaaacgaaacaaactaaaccacata 217  Q
     |||| ||||||||   |||||||||| || ||||| |||| ||||| ||||| ||||    
T  38652002 gcattagtttggtttggatattatttttaaagtcaaccgaaccaaaccaaaccgcata 38652059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 172
Target Start/End: Original strand, 22472960 - 22473104
Alignment:
Q  31 gaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaacttt---ttaactttcttttaatgttgaaaacnnnnnnntttattgtctc 127  Q
    ||||||||||  |||||||||| ||||| |||||||||||||||| |||| |||   |||||||  |||| || ||||||||       | |||||||||    
T  22472960 gaaatttaaaacattgttggaagcattgttgaaaatatgttgtgttttaaatttttattaacttgattttgatattgaaaacaaaaaattgtattgtctc 22473059  T
Q  128 ggaaaaaaccgcaccgaccaatccaacacaaaccacatttgtttg 172  Q
    |  |||||| ||||| ||| ||||||||||||| ||||| |||||    
T  22473060 gagaaaaactgcaccaaccgatccaacacaaactacattggtttg 22473104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 25465986 - 25465928
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||| |||||||||||||||| ||| | |||||||||  ||||||||||||||||    
T  25465986 aaacattgttgaaaatatgttgtgttttagccttttaacttgattttaatgttgaaaac 25465928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 44651144 - 44651086
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    ||||||||||||||||||| ||||| | |||||||||||||  ||||||||||| ||||    
T  44651144 aaacattgctgaaaatatgctgtgtttcaactttttaacttgattttaatgttggaaac 44651086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 2832256 - 2832345
Alignment:
Q  20 taatgttaaatgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||| |||||||||| |||  |||||||||||||||  || ||||| ||||||| ||| ||||| ||||   ||||||||||||||||    
T  2832256 taatgtgaaatgaaattaaaaacattgttggaaacattaatggaaatacgttgtgttttaccttttaaactcgattttaatgttgaaaac 2832345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 26758409 - 26758356
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttg 104  Q
    ||||||||||||||||||||||||| ||| |||||||| ||  |||||||||||    
T  26758409 aaacattgctgaaaatatgttgtgttttagctttttaatttaattttaatgttg 26758356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 175
Target Start/End: Complemental strand, 4554876 - 4554752
Alignment:
Q  51 aaacattgctgaaaa-tatgttgtgtattaactttttaactttcttttaatgttgaaaacnnnnnnntttattgtctcggaaaaaaccgcaccgaccaat 149  Q
    ||||||||||||||| |||||||||| ||||||||||||| |  ||||||||||| ||||       ||||| ||||   ||||||||||| | ||| ||    
T  4554876 aaacattgctgaaaaatatgttgtgttttaactttttaacctaattttaatgttgcaaacaaaaaaatttatcgtct-aaaaaaaaccgcatcaaccgat 4554778  T
Q  150 ccaacacaaaccacatttgtttggtt 175  Q
    ||||| |||||| |||| ||||||||    
T  4554777 ccaactcaaaccgcattagtttggtt 4554752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 8557851 - 8557909
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    ||||||||| ||||||||||||||| | | |||||||||||  ||||||||||| ||||    
T  8557851 aaacattgcagaaaatatgttgtgtttaagctttttaacttgattttaatgttggaaac 8557909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 108
Target Start/End: Complemental strand, 25858374 - 25858317
Alignment:
Q  50 gaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaa 108  Q
    ||||||||| |||||||| ||||| | |||||||||||||||  |||||||||||||||    
T  25858374 gaaacattgttgaaaataagttgttt-ttaactttttaacttgattttaatgttgaaaa 25858317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 38680992 - 38680934
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||| || ||||||||||||| |||||||||||||||  ||||||| ||| ||||    
T  38680992 aaacattgttggaaatatgttgtgttttaactttttaacttaattttaatattggaaac 38680934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 27054255 - 27054202
Alignment:
Q  55 attgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaa 108  Q
    ||||| ||||||||||||||| |||||||||||| ||  |||||| ||||||||    
T  27054255 attgcagaaaatatgttgtgttttaactttttaatttgattttaacgttgaaaa 27054202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 22 - 206
Target Start/End: Original strand, 10847400 - 10847586
Alignment:
Q  22 atgttaaatgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaacnnnnnnntttat 121  Q
    ||||| ||||||||| |||  ||||| |||||||||| |||||||||||||||| |||||||||||| ||| ||||||||||| ||||       | |||    
T  10847400 atgttgaatgaaattaaaaacattgtcggaaacattgttgaaaatatgttgtgttttaactttttaattttgttttaatgttggaaacaaaaaattgtat 10847499  T
Q  122 tgtctcggaaaaaaccgcaccgaccaatccaacacaaaccacatttgtttggttc--atattattttgaatgtcaaacgaaacaaac 206  Q
    ||||| | | ||||| ||| | ||||||||||| ||||||||||| |||||||||  || ||||||| || ||||| |||| |||||    
T  10847500 tgtctagcagaaaactgcatcaaccaatccaacccaaaccacattggtttggttctgattttattttcaaagtcaaccgaaccaaac 10847586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 51 - 172
Target Start/End: Original strand, 32910266 - 32910387
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaacnnnnnnntttattgtctcggaaaaaaccgcaccgaccaatc 150  Q
    |||||||| |||||||||||||||| | |||||||||||||  ||||||||||| ||||       | ||| |||||| |||||| | |||| ||| |||    
T  32910266 aaacattgttgaaaatatgttgtgtttaaactttttaacttgattttaatgttggaaacaaaaaattgtatcgtctcgaaaaaaatcacaccaaccgatc 32910365  T
Q  151 caacacaaaccacatttgtttg 172  Q
    ||||||||||| ||||||||||    
T  32910366 caacacaaaccgcatttgtttg 32910387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 15880029 - 15880106
Alignment:
Q  32 aaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||||  |||||| |||||||||||||||||||||||||  ||| |||||||||||  ||||||||||| ||||    
T  15880029 aaatttaaaacattgttagaaacattgctgaaaatatgttgtgatttacctttttaacttgattttaatgttggaaac 15880106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 51 - 173
Target Start/End: Original strand, 35980175 - 35980297
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaacnnnnnnntttattgtctcggaaaaaaccgcaccgaccaatc 150  Q
    |||||||||||||||||||| || | ||| |||||||||||  ||||||||||| ||||       | |||||||||| ||||||||||||| ||| |||    
T  35980175 aaacattgctgaaaatatgtcgttttttacctttttaacttgattttaatgttggaaacaaaaaattgtattgtctcgaaaaaaaccgcaccaaccgatc 35980274  T
Q  151 caacacaaaccacatttgtttgg 173  Q
     ||  ||||||||||| ||||||    
T  35980275 taaaccaaaccacattggtttgg 35980297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 8268858 - 8268702
Alignment:
Q  19 gtaatgttaaatgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaacnnnnnnntt 118  Q
    ||||||||  |||||||| |||  ||||| ||||||||| ||| ||||||||||||| ||| |||||||||||  ||||||||||| ||||       |     
T  8268858 gtaatgttggatgaaattaaaaacattgtcggaaacattactggaaatatgttgtgttttagctttttaacttgattttaatgttgtaaacaaaaaattg 8268759  T
Q  119 tattgtctcggaaaaaaccgcaccgaccaatccaacacaaaccacatttgtttggtt 175  Q
     ||||||| | || |||||||||| ||| ||||||| ||||||  ||| ||||||||    
T  8268758 cattgtctggtaagaaaccgcaccaaccgatccaacccaaaccgtattagtttggtt 8268702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 36797926 - 36797993
Alignment:
Q  43 attgttggaaacattgctgaaaatatgttgtgtattaacttt-ttaactttcttttaatgttgaaaac 109  Q
    |||||||||||||||||||||||||| |||||| |||||||| |||||||  |||||||||| |||||    
T  36797926 attgttggaaacattgctgaaaatatattgtgttttaactttgttaacttgattttaatgttaaaaac 36797993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 6694270 - 6694328
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    ||||||||||||||||||||||||| |||||||||||| ||  ||||||||||| ||||    
T  6694270 aaacattgctgaaaatatgttgtgttttaactttttaatttgattttaatgttggaaac 6694328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 19051292 - 19051234
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||  |||||||||||||||| |||||||||||||||  ||||||||||||||||    
T  19051292 aaacattagtgaaaatatgttgtgttttaactttttaacttgattttaatgttgaaaac 19051234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 26344950 - 26345008
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    ||||||||||||||||||||||||| |||||||||||| ||  ||||||||||| ||||    
T  26344950 aaacattgctgaaaatatgttgtgttttaactttttaatttgattttaatgttggaaac 26345008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 15882029 - 15882109
Alignment:
Q  29 atgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    ||||||||||||  |||| |||| |||||| |||||||||||||||| ||| |||||||| ||  ||| ||||||||||||    
T  15882029 atgaaatttaaaacattgctggagacattgttgaaaatatgttgtgttttatctttttaatttgatttaaatgttgaaaac 15882109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 175
Target Start/End: Original strand, 35992498 - 35992622
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaacnnnnnnntttattgtctcggaaaaaaccgcaccgaccaatc 150  Q
    |||||||| |||||||||||  ||| ||| |||||||||||  ||||||||||| || |       | |||||||||| ||||||||||||| ||| |||    
T  35992498 aaacattgttgaaaatatgtcttgttttacctttttaacttgattttaatgttggaagcaaaaaattgtattgtctcgaaaaaaaccgcaccaaccgatc 35992597  T
Q  151 caacacaaaccacatttgtttggtt 175  Q
    |||  |||||| |||| ||||||||    
T  35992598 caaaccaaaccgcattagtttggtt 35992622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 17989237 - 17989179
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||| |||||||||||||||| ||| ||||||||||   ||||||||||||||||    
T  17989237 aaacattgttgaaaatatgttgtgttttacctttttaactccattttaatgttgaaaac 17989179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 39158189 - 39158279
Alignment:
Q  19 gtaatgttaaatgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||| ||||| |||||||  || |||| |||||| ||||||||||||||||||  || |||||||||||  |||||| || ||||||    
T  39158189 gtaatgttgaatgacatttaaaacatcgttgaaaacatagctgaaaatatgttgtgttctagctttttaacttgattttaacgtcgaaaac 39158279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 16537705 - 16537777
Alignment:
Q  19 gtaatgttaaatgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactt 91  Q
    ||||||| | || ||| ||||| |||||||||||||||||||  ||||||||||||| |||  ||||||||||    
T  16537705 gtaatgtcagataaaacttaaaatattgttggaaacattgcttgaaatatgttgtgttttaggtttttaactt 16537777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 102
Target Start/End: Original strand, 32937980 - 32938032
Alignment:
Q  50 gaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgt 102  Q
    ||||||||||| |||||||||||||| ||| |||||||||||  |||||||||    
T  32937980 gaaacattgcttaaaatatgttgtgttttagctttttaacttgattttaatgt 32938032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 175
Target Start/End: Original strand, 36203304 - 36203459
Alignment:
Q  21 aatgttaaatgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaac-tttttaactttcttttaatgttgaaaacnnnnnnnttt 119  Q
    ||||| |||||||||| ||| |||||| ||||| ||| ||||||||||||||||| || || |||||||| |   |||||||||| ||||       |      
T  36203304 aatgtgaaatgaaattaaaaatattgtcggaaatattactgaaaatatgttgtgtttttacgtttttaac-tcgatttaatgttggaaacaaaaaattcc 36203402  T
Q  120 attgtctcg-gaaaaaaccgcaccgaccaatccaacacaaaccacatttgtttggtt 175  Q
    |||||||||  ||||||| ||||| ||||||||||| |||||| |||| ||||||||    
T  36203403 attgtctcgaaaaaaaactgcaccaaccaatccaacccaaaccgcattagtttggtt 36203459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 12973749 - 12973691
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||||| ||||||||||| || |||||||||||| ||  ||||||||||| ||||    
T  12973749 aaacattgctaaaaatatgttgcgttttaactttttaatttgattttaatgttgtaaac 12973691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 40095313 - 40095371
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||| ||||||||||||| || ||| |||||||| ||  ||||||||||||||||    
T  40095313 aaacattgttgaaaatatgttgcgttttagctttttaatttaattttaatgttgaaaac 40095371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 165
Target Start/End: Complemental strand, 17762950 - 17762813
Alignment:
Q  29 atgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaact-ttcttttaatgttgaaaacnnnnnnntttattgtctc 127  Q
    ||||||||||||  ||||| |||||||||||||||||||||||| ||  || ||||||||||    ||||||||||| ||||       | |||||||||    
T  17762950 atgaaatttaaaacattgtcggaaacattgctgaaaatatgttgcgttatagctttttaactcaaattttaatgttggaaacaaaaaattgtattgtctc 17762851  T
Q  128 ggaaaaaaccgcaccgaccaatccaacacaaaccacat 165  Q
    | ||||||||||||| ||||||||||  ||||||||||    
T  17762850 gaaaaaaaccgcaccaaccaatccaatccaaaccacat 17762813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 33 - 175
Target Start/End: Complemental strand, 1331207 - 1331066
Alignment:
Q  33 aatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaacnnnnnnntttattgtctcggaaa 132  Q
    |||| ||| |||||| | ||| ||||||||||||||||||||| ||| ||||| ||||   ||||||||||| ||||       | |||||||||| |||    
T  1331207 aattaaaaatattgtcgaaaatattgctgaaaatatgttgtgttttacctttt-aactcgattttaatgttggaaacaaaaaattgtattgtctcgaaaa 1331109  T
Q  133 aaaccgcaccgaccaatccaacacaaaccacatttgtttggtt 175  Q
    |||||||||| ||  ||||||| ||||||||||| ||||||||    
T  1331108 aaaccgcaccaactgatccaacccaaaccacattggtttggtt 1331066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 29 - 175
Target Start/End: Complemental strand, 28790713 - 28790567
Alignment:
Q  29 atgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaacnnnnnnntttattgtctcg 128  Q
    |||||||||||| ||||||    ||||||| || |||||||||||||  || ||||||||||   ||||||||||| ||||       | |||| |||||    
T  28790713 atgaaatttaaaatattgtcaagaacattgttggaaatatgttgtgttatagctttttaactcgattttaatgttggaaacaaaaaattgtattatctcg 28790614  T
Q  129 gaaaaaaccgcaccgaccaatccaacacaaaccacatttgtttggtt 175  Q
    |||||||||||||| ||| |||| || ||||||||||| ||||||||    
T  28790613 gaaaaaaccgcaccaaccgatccgacccaaaccacattggtttggtt 28790567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 119 - 175
Target Start/End: Original strand, 15320549 - 15320605
Alignment:
Q  119 tattgtctcggaaaaaaccgcaccgaccaatccaacacaaaccacatttgtttggtt 175  Q
    |||||||||| ||||||||||| | |||||||||| |||||||||||| ||||||||    
T  15320549 tattgtctcgaaaaaaaccgcatcaaccaatccaaaacaaaccacattagtttggtt 15320605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 105
Target Start/End: Original strand, 24725698 - 24725752
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttga 105  Q
    ||||||||||| ||||||||||| | |||||||||||||||  ||||||||||||    
T  24725698 aaacattgctggaaatatgttgtcttttaactttttaacttgattttaatgttga 24725752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 30759503 - 30759593
Alignment:
Q  19 gtaatgttaaatgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    ||||||||  |||||||||||| |||||| | |||||||| || |||| ||||||||  |||||||||||||   ||||||||||| ||||    
T  30759503 gtaatgttggatgaaatttaaaatattgtcgaaaacattgttggaaatgtgttgtgttataactttttaactcagttttaatgttggaaac 30759593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 104
Target Start/End: Original strand, 30761618 - 30761703
Alignment:
Q  19 gtaatgttaaatgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttg 104  Q
    ||||||||  |||||||||||| ||||||   |||||||| || ||||||||| |||  |||||||||||||   |||||||||||    
T  30761618 gtaatgttggatgaaatttaaaatattgtctaaaacattgttggaaatatgttatgttataactttttaactcgattttaatgttg 30761703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 104
Target Start/End: Complemental strand, 44085668 - 44085615
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttg 104  Q
    ||||||||||||||||||||||||| |   |||||||||||  |||||||||||    
T  44085668 aaacattgctgaaaatatgttgtgtttcggctttttaacttgattttaatgttg 44085615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 6e-16; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 51 - 216
Target Start/End: Original strand, 8118183 - 8118349
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaacnnnnnnntttattgtctcggaaaaaaccgcaccgaccaatc 150  Q
    ||||||||||||||||||||||||| | | |||||||||||  ||||||||||||||||       | ||| ||||| ||| |||||||||  ||| |||    
T  8118183 aaacattgctgaaaatatgttgtgtttcagctttttaacttgattttaatgttgaaaacaaaaaattatatcgtctc-gaacaaaccgcactaaccgatc 8118281  T
Q  151 caacacaaaccacatttgtttggttc--atattattttgaatgtcaaacgaaacaaactaaaccacat 216  Q
    |||| ||||| ||||| |||||||||  || ||||||| ||  |||| |||| ||||| |||||||||    
T  8118282 caacccaaacaacattggtttggttcagattttatttttaaaatcaaccgaaccaaaccaaaccacat 8118349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 23032896 - 23032806
Alignment:
Q  19 gtaatgttaaatgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||||||||||||| ||| |||||| ||||  ||||||| ||||||||||||| ||| ||||||||||   |||| |||||||||||    
T  23032896 gtaatgttaaatgaaattaaaaatattgtcggaagtattgctggaaatatgttgtgttttacctttttaactgaattttcatgttgaaaac 23032806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 47483833 - 47483744
Alignment:
Q  20 taatgttaaatgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||  |||||||||||| ||||||||||||||| | || ||||||||||||||  || |||||||||   ||||||||||||||||    
T  47483833 taatgttggatgaaatttaaaatattgttggaaacatggttggaaatatgttgtgtaacaattttttaactcgattttaatgttgaaaac 47483744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 6879998 - 6880056
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||| |||||||||||||||| |||||||||||||||  |||||| |||||||||    
T  6879998 aaacattgttgaaaatatgttgtgttttaactttttaacttgattttaaggttgaaaac 6880056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 26524807 - 26524896
Alignment:
Q  20 taatgttaaatgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||  |||||||| |||  ||||| | ||||||||||  ||||||||||||| ||| |||||||||||| ||||||||||| ||||    
T  26524807 taatgttggatgaaattaaaaacattgtcgaaaacattgctagaaatatgttgtgttttagctttttaactttattttaatgttggaaac 26524896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 28 - 109
Target Start/End: Complemental strand, 43202639 - 43202558
Alignment:
Q  28 aatgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    ||||||||| ||| |||||| |||||| ||| |||||||||||||||| |||  ||||||||||  ||||||||||| ||||    
T  43202639 aatgaaattaaaaatattgtgggaaacgttgatgaaaatatgttgtgttttacttttttaacttaattttaatgttggaaac 43202558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 90
Target Start/End: Complemental strand, 20306808 - 20306748
Alignment:
Q  30 tgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaact 90  Q
    ||||||| ||| |||||||| |||||||| |||||||||||||||| || |||||||||||    
T  20306808 tgaaattaaaaatattgttgaaaacattgttgaaaatatgttgtgtttttactttttaact 20306748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 2734550 - 2734479
Alignment:
Q  19 gtaatgttaaatgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaact 90  Q
    ||||||||  ||||||||||||  ||||| |||||||||| |||||||||||||||| ||| | ||||||||    
T  2734550 gtaatgttggatgaaatttaaagcattgtcggaaacattgttgaaaatatgttgtgttttatcattttaact 2734479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 40849042 - 40848983
Alignment:
Q  50 gaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||||||| ||||||||||||| ||| ||||||||||   ||||||||||||||||    
T  40849042 gaaacattgctggaaatatgttgtgttttatctttttaactcgattttaatgttgaaaac 40848983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 26214972 - 26215062
Alignment:
Q  19 gtaatgttaaatgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||  ||||||||| |||  ||||| |||||||||| || ||||||||||||| ||| |||||||| ||  ||||||||||| ||||    
T  26214972 gtaatgtcgaatgaaattaaaaacattgtcggaaacattgatggaaatatgttgtgttttacctttttaatttgattttaatgttggaaac 26215062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 52 - 108
Target Start/End: Complemental strand, 7697468 - 7697412
Alignment:
Q  52 aacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaa 108  Q
    |||||||||||||||||||||||| ||| |||| ||| ||  |||||||||||||||    
T  7697468 aacattgctgaaaatatgttgtgttttatctttataatttgattttaatgttgaaaa 7697412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 175
Target Start/End: Complemental strand, 11399339 - 11399185
Alignment:
Q  19 gtaatgttaaatgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaacnnnnnnntt 118  Q
    |||||||  |||||||||||||  ||||| |||| | ||||| |||||||||||||| ||| ||||||||||   || |||| |||||||        |     
T  11399339 gtaatgtggaatgaaatttaaaacattgtcggaacc-ttgctcaaaatatgttgtgttttacctttttaactcgattataattttgaaaataaaaaattg 11399241  T
Q  119 tattgtctcggaaaaaaccgcaccgaccaatccaacacaaaccacatttgtttggtt 175  Q
    | |||||||  ||||||||||||| ||| ||||||| |||||| |||||||||||||    
T  11399240 tgttgtctca-aaaaaaccgcaccaaccgatccaacccaaaccgcatttgtttggtt 11399185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 21237644 - 21237735
Alignment:
Q  19 gtaatgttaaatgaaatttaaattattgttggaaacattgctgaaaatatgttgtg-tattaactttttaactttcttttaatgttgaaaac 109  Q
    ||||||||  |||||||| |||  ||||| | |||||||||||||||||||||||| | | |  ||||||||||  ||||||||||||||||    
T  21237644 gtaatgttggatgaaattaaaaacattgtcgaaaacattgctgaaaatatgttgtgctctaatttttttaacttgattttaatgttgaaaac 21237735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 11834366 - 11834424
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||| |||||||||||||||| ||| |||||||| ||  |||||| |||||||||    
T  11834366 aaacattgttgaaaatatgttgtgttttagctttttaatttgattttaacgttgaaaac 11834424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 30079486 - 30079544
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||||||||||||| |||||| ||| |||||||| ||  ||||||||||| ||||    
T  30079486 aaacattgctgaaaatatattgtgttttagctttttaagttgattttaatgttggaaac 30079544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 31287667 - 31287725
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||| |||||||||||||||||||  |||||||||||| ||  ||||||||||| ||||    
T  31287667 aaacgttgctgaaaatatgttgtggtttaactttttaatttgattttaatgttggaaac 31287725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 35819974 - 35820032
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||||||||||||| |||||| ||| ||||  || ||| ||||||||||||||||    
T  35819974 aaacattgctgaaaatatattgtgttttatctttgaaattttattttaatgttgaaaac 35820032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 37375508 - 37375450
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||| |||||||||||||||| | || ||||||||||  ||||||||||| ||||    
T  37375508 aaacattgttgaaaatatgttgtgtttaaaatttttaacttgattttaatgttggaaac 37375450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 31012966 - 31013014
Alignment:
Q  60 tgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    ||||||||| |||||| ||||||||||||| || ||||||||||||||||    
T  31012966 tgaaaatatattgtgttttaactttttaac-ttgttttaatgttgaaaac 31013014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 6e-16; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 51 - 171
Target Start/End: Original strand, 892233 - 892352
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaacnnnnnnntttattgtctcggaaaaaaccgcaccgaccaatc 150  Q
    ||||||||||  ||||||||||||| |||||||| |||||   ||||||||||||||||       | ||||||||| |||||||||||| | |||||||    
T  892233 aaacattgctagaaatatgttgtgttttaactttctaactcgattttaatgttgaaaacaaaaaattatattgtctc-gaaaaaaccgcatcaaccaatc 892331  T
Q  151 caacacaaaccacatttgttt 171  Q
    |||| ||||||||||| ||||    
T  892332 caacccaaaccacattggttt 892352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 104
Target Start/End: Original strand, 13859264 - 13859336
Alignment:
Q  32 aaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttg 104  Q
    ||||||||| |||||| |||||||||||||||||||||||||||  |||| |||||||||  ||||| |||||    
T  13859264 aaatttaaaatattgtcggaaacattgctgaaaatatgttgtgttataaccttttaacttgattttagtgttg 13859336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 11417250 - 11417192
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    ||||||||||||||||||||||||| ||| |||||||| ||| ||||||| ||||||||    
T  11417250 aaacattgctgaaaatatgttgtgttttatctttttaattttattttaattttgaaaac 11417192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 8064702 - 8064509
Alignment:
Q  20 taatgttaaatgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaacnnnnnnnttt 119  Q
    |||||||  |||||||| |||  ||||||||||||||||||    | ||||||||| ||| |||||||||||  ||||||||||| ||||       | |    
T  8064702 taatgttggatgaaattaaaaacattgttggaaacattgct----agatgttgtgttttagctttttaacttgattttaatgttggaaacaaaaaattgt 8064607  T
Q  120 attgtctcggaaaaaaccgcaccgaccaatccaacacaaaccacatttgtttggttc-atattattttgaatgtcaaacgaaacaaactaaaccacat 216  Q
    ||| ||| | ||||||||||||| ||| || |||| |||||| |||  ||||||||| || ||||||| || ||||| | || ||||| |||||||||    
T  8064606 attatctagtaaaaaaccgcaccaaccgattcaacccaaaccgcatcggtttggttcgattttattttaaaagtcaatcaaaccaaaccaaaccacat 8064509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 20500742 - 20500683
Alignment:
Q  50 gaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||||||||||||||||||||| |||  ||||||||||  ||||||||||| ||||    
T  20500742 gaaacattgctgaaaatatgttgtgttttagatttttaacttgattttaatgttgtaaac 20500683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 7169984 - 7170041
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaa 108  Q
    |||||||||| |||||||||||||| |||||||||||| ||  |||||| ||||||||    
T  7169984 aaacattgctaaaaatatgttgtgttttaactttttaatttgattttaacgttgaaaa 7170041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 108
Target Start/End: Original strand, 7676216 - 7676305
Alignment:
Q  19 gtaatgttaaatgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaa 108  Q
    ||||||| |||||||||| ||| |||| | | |||||||| |||||||||||||| | ||| ||||||||||   |||||||||| ||||    
T  7676216 gtaatgtgaaatgaaattaaaaatattatcgaaaacattgttgaaaatatgttgtattttacctttttaactcgattttaatgtttaaaa 7676305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 176
Target Start/End: Original strand, 14940542 - 14940599
Alignment:
Q  118 ttattgtctcggaaaaaaccgcaccgaccaatccaacacaaaccacatttgtttggttc 176  Q
    ||||||||||| ||||||||||||| ||||||||||| |||||| | || |||||||||    
T  14940542 ttattgtctcg-aaaaaaccgcaccaaccaatccaacccaaaccgcgttggtttggttc 14940599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 19134997 - 19135063
Alignment:
Q  43 attgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    ||||||| ||||||||||| |||||||  |||| ||| ||||||||||   ||||||||||||||||    
T  19134997 attgttgaaaacattgctggaaatatgccgtgttttacctttttaactcgattttaatgttgaaaac 19135063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 109
Target Start/End: Original strand, 12108469 - 12108518
Alignment:
Q  60 tgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||||||||||| ||| |||||||||||  ||||||||||| ||||    
T  12108469 tgaaaatatgttgtgttttacctttttaacttaattttaatgttggaaac 12108518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 3129440 - 3129520
Alignment:
Q  29 atgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    ||||||||||||  ||||| ||||||||||||||||||||||| ||| |||  |||||||||   ||||||||||||||||    
T  3129440 atgaaatttaaaacattgtcggaaacattgctgaaaatatgttatgttttagatttttaactcgattttaatgttgaaaac 3129520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 11017192 - 11017134
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    ||||||||||||||||||||||||| ||| |||| ||| ||| ||||||||||||||||    
T  11017192 aaacattgctgaaaatatgttgtgttttatctttgtaattttattttaatgttgaaaac 11017134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 37162550 - 37162608
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||||||||||||| |||||| |||||||||||| ||  ||||||||||||||||    
T  37162550 aaacattgctgaaaatatattgtgttttaactttttaatttggttttaatgttgaaaac 37162608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 12912675 - 12912616
Alignment:
Q  50 gaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||||||| ||||||||||||| ||||  |||||||||  ||||||||||||||||    
T  12912675 gaaacattgctggaaatatgttgtgttttaatgttttaacttgattttaatgttgaaaac 12912616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 109
Target Start/End: Original strand, 38926320 - 38926386
Alignment:
Q  43 attgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    ||||||| ||| |||  |||||||||||||||| ||| |||||||||||  ||||||||||||||||    
T  38926320 attgttgtaaatatttttgaaaatatgttgtgttttacctttttaacttgattttaatgttgaaaac 38926386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 44336983 - 44336916
Alignment:
Q  19 gtaatgttaaatgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaacttttt 86  Q
    |||||||  ||||||||| ||| |||||| | |||||||| |||||||||||||||| ||| ||||||    
T  44336983 gtaatgtggaatgaaattaaaaatattgtcgaaaacattgttgaaaatatgttgtgttttaccttttt 44336916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 109
Target Start/End: Complemental strand, 19539581 - 19539519
Alignment:
Q  47 ttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||||||| | ||||| |||||||| |||||||||||||||  | ||||||||| ||||    
T  19539581 ttggaaacattgtttaaaatttgttgtgttttaactttttaacttgatattaatgttggaaac 19539519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 36340648 - 36340706
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||||||||||||| |||||| ||| ||||  || ||| ||||||||||||||||    
T  36340648 aaacattgctgaaaatatattgtgttttatctttgaaattttattttaatgttgaaaac 36340706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 12193364 - 12193401
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaa 88  Q
    ||||||||||||||||||||||||| ||| ||||||||    
T  12193364 aaacattgctgaaaatatgttgtgttttagctttttaa 12193401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 51 - 88
Target Start/End: Original strand, 12437792 - 12437829
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaa 88  Q
    ||||||||||||||||||||||||| ||| ||||||||    
T  12437792 aaacattgctgaaaatatgttgtgttttagctttttaa 12437829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 109
Target Start/End: Original strand, 12074064 - 12074144
Alignment:
Q  29 atgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    ||||||| ||||  ||||||||||||||||||  ||||||||||||| ||  | |||||| ||  ||||||||||| ||||    
T  12074064 atgaaatataaagcattgttggaaacattgctcgaaatatgttgtgtttttgcattttaaattaattttaatgttggaaac 12074144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 104
Target Start/End: Original strand, 18755237 - 18755281
Alignment:
Q  60 tgaaaatatgttgtgtattaactttttaactttcttttaatgttg 104  Q
    |||||||||||||||| |||||||||||| ||  |||||||||||    
T  18755237 tgaaaatatgttgtgttttaactttttaatttggttttaatgttg 18755281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 90
Target Start/End: Complemental strand, 6718805 - 6718734
Alignment:
Q  19 gtaatgttaaatgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaact 90  Q
    ||||||||  |||||||||||| |||||||| |||||||||||||||||| ||||||  || ||||||||||    
T  6718805 gtaatgttggatgaaatttaaaatattgttgaaaacattgctgaaaatatattgtgttatagctttttaact 6718734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 12264068 - 12263989
Alignment:
Q  29 atgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    ||||||||| ||  ||||||||| ||||||||||||||| ||||| | ||||||||||| |||| |||| |||||||||||    
T  12264068 atgaaatttgaaacattgttggatacattgctgaaaataagttgt-ttttaactttttatctttattttgatgttgaaaac 12263989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 691454 - 691513
Alignment:
Q  51 aaacattgctgaaaa-tatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    ||||||||||||||| |||||||||| |||||||||||||||  ||||||||||| ||||    
T  691454 aaacattgctgaaaaatatgttgtgttttaactttttaacttgattttaatgttggaaac 691513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 175
Target Start/End: Original strand, 27571938 - 27572061
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaacnnnnnnntttattgtctcggaaaaaaccgcaccgaccaatc 150  Q
    ||||||||||| |||||||| |||| |||  |||||||||   ||||||||||| ||||       | |||||||||| ||||||||||||| ||| |||    
T  27571938 aaacattgctggaaatatgtcgtgttttacttttttaactcaattttaatgttggaaacaaaaaattgtattgtctcg-aaaaaaccgcaccaaccgatc 27572036  T
Q  151 caacacaaaccacatttgtttggtt 175  Q
    |||| |||||| |||| ||||||||    
T  27572037 caacccaaaccgcattggtttggtt 27572061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 55 - 109
Target Start/End: Complemental strand, 6633500 - 6633446
Alignment:
Q  55 attgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    ||||||||||||||||||||| ||| ||||||||||   ||||||||||||||||    
T  6633500 attgctgaaaatatgttgtgttttacctttttaactggattttaatgttgaaaac 6633446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 11402779 - 11402721
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    ||||||||||||||||||||||||| | | |||||||||||  ||||||||||| ||||    
T  11402779 aaacattgctgaaaatatgttgtgtttcagctttttaacttgattttaatgttggaaac 11402721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 25495271 - 25495213
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||| |||||||||||||||| ||| |||||||| ||  ||||||||||||||||    
T  25495271 aaacattgttgaaaatatgttgtgttttacctttttaatttgattttaatgttgaaaac 25495213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 33792853 - 33792795
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    ||||||||||||||||||||||||| ||| |||||||| ||  |||||| |||||||||    
T  33792853 aaacattgctgaaaatatgttgtgttttacctttttaatttgattttaacgttgaaaac 33792795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 88
Target Start/End: Original strand, 6894280 - 6894349
Alignment:
Q  19 gtaatgttaaatgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaa 88  Q
    ||||||||  ||||||||||||  ||||||| |||| |  ||||||||||||||||| ||||||||||||    
T  6894280 gtaatgttggatgaaatttaaaacattgttgaaaacgtgactgaaaatatgttgtgttttaactttttaa 6894349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 109
Target Start/End: Original strand, 26007251 - 26007328
Alignment:
Q  32 aaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    ||||||||| |||| | | |||||||| || |||||||||||||  || |||||||||||  ||||||||||||||||    
T  26007251 aaatttaaaatattatcgaaaacattgttggaaatatgttgtgttatagctttttaacttgattttaatgttgaaaac 26007328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 44 - 104
Target Start/End: Original strand, 563797 - 563857
Alignment:
Q  44 ttgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttg 104  Q
    |||||||||||||||||  ||||||| ||| | ||| |||||||||||| |||||||||||    
T  563797 ttgttggaaacattgctagaaatatgatgtattttagctttttaactttattttaatgttg 563857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 108
Target Start/End: Complemental strand, 10090424 - 10090376
Alignment:
Q  60 tgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaa 108  Q
    |||||||||||||||||||| |||||||| ||  |||||||||||||||    
T  10090424 tgaaaatatgttgtgtattagctttttaatttaattttaatgttgaaaa 10090376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 175
Target Start/End: Complemental strand, 14652639 - 14652514
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaac-tttttaactttcttttaatgttgaaaacnnnnnnntttattgtctcggaaaaaaccgcaccgaccaat 149  Q
    ||||||||||||||||||||||||| | | | ||||||||||  ||||||||||||||||       |  || |||||| ||||||| ||||| ||| ||    
T  14652639 aaacattgctgaaaatatgttgtgtttaagcttttttaacttgattttaatgttgaaaacaaaaaattgcatcgtctcgaaaaaaactgcaccaaccgat 14652540  T
Q  150 ccaacacaaaccacatttgtttggtt 175  Q
    ||||| |||| | |||| ||||||||    
T  14652539 ccaacccaaatcgcattggtttggtt 14652514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 20191811 - 20191866
Alignment:
Q  20 taatgttaaatgaaatttaaattattgttggaaacattgctgaaaatatgttgtgt 75  Q
    |||||||  ||||||||||||  ||||||| ||||||||||| |||||||||||||    
T  20191811 taatgttcgatgaaatttaaaacattgttgcaaacattgctggaaatatgttgtgt 20191866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 109
Target Start/End: Original strand, 7591458 - 7591515
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||| || ||||||||||| | ||||||||||||| || ||||||||||||||||    
T  7591458 aaacattgttggaaatatgttgtattttaactttttaac-ttattttaatgttgaaaac 7591515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 41455054 - 41454996
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||| |||||||||||||||| ||| |||||||| ||  ||||||||||| ||||    
T  41455054 aaacattgatgaaaatatgttgtgttttagctttttaatttgattttaatgttggaaac 41454996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 18845729 - 18845640
Alignment:
Q  20 taatgttaaatgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||  |||||||| |||  ||||| ||||||||||||  || |||||||||| ||  |||||||||||  ||||||||||| ||||    
T  18845729 taatgttggatgaaattaaaaacattgtcggaaacattgctagaattatgttgtgttttggctttttaacttgattttaatgttggaaac 18845640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 36567892 - 36567843
Alignment:
Q  55 attgctgaaaatatgttgtgtattaactttttaactttcttttaatgttg 104  Q
    ||||||||||||||||||||| ||| |||||||| ||  |||||||||||    
T  36567892 attgctgaaaatatgttgtgttttagctttttaatttgattttaatgttg 36567843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 107
Target Start/End: Original strand, 17131978 - 17132034
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaa 107  Q
    |||||||||||||||||| |||||| ||| ||||  || ||| ||||||||||||||    
T  17131978 aaacattgctgaaaatatattgtgttttatctttgaaattttattttaatgttgaaa 17132034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 33 - 109
Target Start/End: Complemental strand, 22553569 - 22553493
Alignment:
Q  33 aatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||| ||||||| ||||||||  || |||||||| | || |||||||| | ||||  ||||||||||||||||    
T  22553569 aatttaaaatattgtttgaaacattaatggaaatatgtcgcgttttaactttctgacttgattttaatgttgaaaac 22553493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 26690048 - 26690008
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactt 91  Q
    |||||||||||||||||||||||||  || |||||||||||    
T  26690048 aaacattgctgaaaatatgttgtgttatagctttttaactt 26690008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 91
Target Start/End: Complemental strand, 26959780 - 26959740
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactt 91  Q
    |||||||||||||||||||||||||  || |||||||||||    
T  26959780 aaacattgctgaaaatatgttgtgttatagctttttaactt 26959740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 20 - 90
Target Start/End: Original strand, 18881911 - 18881981
Alignment:
Q  20 taatgttaaatgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaact 90  Q
    |||||||  |||||||||||| |||||||||||||||||||  |||||||||||||  || ||||||||||    
T  18881911 taatgttggatgaaatttaaaatattgttggaaacattgctagaaatatgttgtgttatagctttttaact 18881981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 60 - 175
Target Start/End: Original strand, 48602431 - 48602545
Alignment:
Q  60 tgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaacnnnnnnntttattgtctcggaaaaaaccgcaccgaccaatccaacacaaa 159  Q
    |||||||||||| ||| |||||||||||||||  ||||||||||||||||       | |||||| || || ||||||||||| ||| ||||||| ||||    
T  48602431 tgaaaatatgttttgttttaactttttaacttaattttaatgttgaaaacaacaaattgtattgtttc-gataaaaccgcaccaaccgatccaacccaaa 48602529  T
Q  160 ccacatttgtttggtt 175  Q
    || |||| ||||||||    
T  48602530 ccgcattggtttggtt 48602545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 51 - 175
Target Start/End: Original strand, 23120148 - 23120273
Alignment:
Q  51 aaacattgctgaaaa-tatgttgtgtattaactttttaactttcttttaatgttgaaaacnnnnnnntttattgtctcggaaaaaaccgcaccgaccaat 149  Q
    ||||||||||||||| |||||||||| ||||||||||||| |  ||||||||||| ||||       ||||| |||| | ||||||| |||   ||| ||    
T  23120148 aaacattgctgaaaaatatgttgtgttttaactttttaacctgattttaatgttggaaacaaaaaaatttatcgtctagaaaaaaactgcatgaacctat 23120247  T
Q  150 ccaacacaaaccacatttgtttggtt 175  Q
    ||||| ||||||||||| ||||||||    
T  23120248 ccaacccaaaccacattagtttggtt 23120273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 8484854 - 8484795
Alignment:
Q  51 aaacattgctgaaaatatgtt-gtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    ||||||||||||||||||||| |||| |||||||||||| ||  ||||||||||||||||    
T  8484854 aaacattgctgaaaatatgtttgtgttttaactttttaatttgattttaatgttgaaaac 8484795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 43 - 109
Target Start/End: Complemental strand, 4688869 - 4688803
Alignment:
Q  43 attgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||| ||||||| || ||||||||||||| ||| |||||||||||   |||||||||||||||    
T  4688869 attgttgggaacattgttgcaaatatgttgtgttttacctttttaacttgagtttaatgttgaaaac 4688803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 8312073 - 8312015
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||||||||||| |||||||| ||| |||||||||||  ||||||||||| ||||    
T  8312073 aaacattgctgaaaatttgttgtgttttagctttttaacttgattttaatgttgtaaac 8312015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 75
Target Start/End: Complemental strand, 40494625 - 40494579
Alignment:
Q  29 atgaaatttaaattattgttggaaacattgctgaaaatatgttgtgt 75  Q
    |||||||||||| |||| |||||||| ||||||||||||||||||||    
T  40494625 atgaaatttaaaatatttttggaaaccttgctgaaaatatgttgtgt 40494579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 42198968 - 42198910
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    ||||||||  ||||||||||||||| ||||||||||||| |  ||||||||||||||||    
T  42198968 aaacattgtcgaaaatatgttgtgttttaactttttaacatgattttaatgttgaaaac 42198910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 51 - 108
Target Start/End: Original strand, 23625801 - 23625858
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaa 108  Q
    |||||||| |||||||||||||||| |||||||||||| ||  |||||| ||||||||    
T  23625801 aaacattgttgaaaatatgttgtgttttaactttttaatttgattttaacgttgaaaa 23625858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 51 - 175
Target Start/End: Complemental strand, 15724073 - 15723948
Alignment:
Q  51 aaacattgctgaaaa-tatgttgtgtattaactttttaactttcttttaatgttgaaaacnnnnnnntttattgtctcggaaaaaaccgcaccgaccaat 149  Q
    ||||||||||||||| |||||||||| ||| || |||||| |  ||||||||||| ||||       ||||| |||| | ||||||||||| | ||| ||    
T  15724073 aaacattgctgaaaaatatgttgtgttttacctctttaacctgattttaatgttggaaacaaaaaaatttatcgtcttgaaaaaaaccgcatcaaccgat 15723974  T
Q  150 ccaacacaaaccacatttgtttggtt 175  Q
    ||||| |||||| |||| ||||||||    
T  15723973 ccaacccaaaccgcattagtttggtt 15723948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 109
Target Start/End: Complemental strand, 51907274 - 51907194
Alignment:
Q  29 atgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    ||||||| ||||  ||||||  |||||||| || || |||||||||| ||| |||||||||||  ||||||||||||||||    
T  51907274 atgaaatataaaacattgttaaaaacattggtggaagtatgttgtgttttacctttttaacttgattttaatgttgaaaac 51907194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 17845104 - 17845014
Alignment:
Q  19 gtaatgttaaatgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    ||||||||  |||||||||||| |||||| | |||||| |||  ||||||||||||   || ||||||||||   ||||||||||||||||    
T  17845104 gtaatgttggatgaaatttaaaatattgtcgaaaacatggctagaaatatgttgtgctatacctttttaactcaattttaatgttgaaaac 17845014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 21069236 - 21069178
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||| ||||||||||| |||| ||| |||||||| ||  ||||||||||||||||    
T  21069236 aaacattgttgaaaatatgtagtgttttagctttttaatttgattttaatgttgaaaac 21069178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 48338556 - 48338468
Alignment:
Q  19 gtaatgttaaatgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||  ||||||||| |||  ||||| |||| ||||||||||| |||||||||| ||| ||||||||||   ||||||||||||||||    
T  48338556 gtaatgtggaatgaaattaaaaacattgtcggaa-cattgctgaaa-tatgttgtgttttacctttttaactcgattttaatgttgaaaac 48338468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 49641022 - 49640973
Alignment:
Q  55 attgctgaaaatatgttgtgtattaactttttaactttcttttaatgttg 104  Q
    |||| |||||||||||||||| |||||| ||||||||  |||||||||||    
T  49641022 attgttgaaaatatgttgtgttttaactctttaacttgattttaatgttg 49640973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: scaffold0688
Description:

Target: scaffold0688; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 1378 - 1290
Alignment:
Q  20 taatgttaaatgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||  ||||||||||||  |||||| |||||||||||| ||||||||||||| |||  || ||||| || ||||||||||||||||    
T  1378 taatgttcgatgaaatttaaaacattgtttgaaacattgctggaaatatgttgtgttttagtttattaac-ttattttaatgttgaaaac 1290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0688; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 20 - 109
Target Start/End: Complemental strand, 7947 - 7859
Alignment:
Q  20 taatgttaaatgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||  ||||||||||||  |||||| |||||||||||| ||||||||||||| |||  || ||||| || ||||||||||||||||    
T  7947 taatgttcgatgaaatttaaaacattgtttgaaacattgctggaaatatgttgtgttttagtttattaac-ttattttaatgttgaaaac 7859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0204 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 19 - 109
Target Start/End: Complemental strand, 26078 - 25990
Alignment:
Q  19 gtaatgttaaatgaaatttaaattattgttggaaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||  ||||||||| |||  ||||| |||| ||||||||||| |||||||||| ||| ||||||||||   ||||||||||||||||    
T  26078 gtaatgtggaatgaaattaaaaacattgtcggaa-cattgctgaaa-tatgttgtgttttacctttttaactcgattttaatgttgaaaac 25990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 51 - 109
Target Start/End: Complemental strand, 62594 - 62536
Alignment:
Q  51 aaacattgctgaaaatatgttgtgtattaactttttaactttcttttaatgttgaaaac 109  Q
    |||||||||||||||||| |||||| ||| ||||  || ||| ||||||||||||||||    
T  62594 aaacattgctgaaaatatattgtgttttatctttgaaattttattttaatgttgaaaac 62536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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