View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14923_low_5 (Length: 330)
Name: NF14923_low_5
Description: NF14923
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14923_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 263; Significance: 1e-146; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 16 - 321
Target Start/End: Original strand, 40842184 - 40842487
Alignment:
| Q |
16 |
agaattgataaggaacattaattggcctctgtattataatttgagacatgaatttgggtaccttggaacttctcaatcgtgtggtatatgatttgagggg |
115 |
Q |
| |
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|||||||||||||||||||||||||||||| | |||||||||||||||| ||||||||| ||| ||||||||||||||||||||||||||||||||||| |
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| T |
40842184 |
agaattgataaggaacattaattggcctct--agtataatttgagacatggatttgggtatcttagaacttctcaatcgtgtggtatatgatttgagggg |
40842281 |
T |
|
| Q |
116 |
agagaagagaacttacatgcttaatgattttcaaattcaatttacggtgacttattcttctatgactttagctgatgcagtttttgtttctaattacaaa |
215 |
Q |
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||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
40842282 |
agagaggagaacttacatgcttaatgcttttcaaattcaatttacggtgacttattcttctatgactctagctgatgcagtttttgtttctaattacaaa |
40842381 |
T |
|
| Q |
216 |
aaataagggaagttatgttgatagtggattgaatactaatgttgctattatttctctcaagtgcagccactaagccaaataattaggaggtatattgtgc |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40842382 |
aaataagggaagttatgttgatagtggattgaatactaatgttgctattatttatctcaagtgcagccactaagccaaataattaggaggtatattgtgc |
40842481 |
T |
|
| Q |
316 |
aaccta |
321 |
Q |
| |
|
|||||| |
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| T |
40842482 |
aaccta |
40842487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 16 - 322
Target Start/End: Original strand, 41958998 - 41959306
Alignment:
| Q |
16 |
agaattgataaggaacattaattggcctctgtattataatttgagacatgaatttgggtaccttggaacttctcaatcgtgtggtatatgatttgagggg |
115 |
Q |
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|
||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
41958998 |
agaattgatgaggaacattaattggcctctgtagtataatttgagacatgaatttgggtatcttgaaacttctcaatcgtgtggtatatgatttgagggg |
41959097 |
T |
|
| Q |
116 |
agagaagagaacttacatgcttaatgattttcaaattcaatttacggtgacttattcttctatgactttagctgatgcag--tttttgtttctaattaca |
213 |
Q |
| |
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||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||||||||||| |
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| T |
41959098 |
agagaggagaacttacatgcttaatgcttttcaaattcaatttacggtgacttattcttctataactctagctgatgcagtttttttgtttctaattacc |
41959197 |
T |
|
| Q |
214 |
aaaaataagggaagttatgttgatagtggattgaatactaatgttgctattatttctctcaagtgcagccactaagccaaataattaggaggtatattgt |
313 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
41959198 |
aaaaataagggaagttatgttgatagtggattgaatactaatgttgctattatttatctcaagttcagccactaagccaaataattagggggtatattgt |
41959297 |
T |
|
| Q |
314 |
gcaacctat |
322 |
Q |
| |
|
||||||||| |
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|
| T |
41959298 |
gcaacctat |
41959306 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 42078211 - 42078265
Alignment:
| Q |
251 |
ctaatgttgctattatttctctcaagtgcagccactaagccaaataattaggagg |
305 |
Q |
| |
|
|||||||||| |||||||||| ||||| |||| |||||||||||||||||||||| |
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|
| T |
42078211 |
ctaatgttgccattatttctcacaagtacagctactaagccaaataattaggagg |
42078265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 323
Target Start/End: Complemental strand, 29587149 - 29586841
Alignment:
| Q |
16 |
agaattgataaggaacattaattggcctctgtattataatttgagacatgaatttgggtaccttggaacttctcaatcgtgtggtatatgatttgagggg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||| ||||||||||||||||| |||||||||||||||| |
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| T |
29587149 |
agaattgataaggaacattaattggcctctgtagtataatttgagacatgaatttgggtatcttgaaacttctcaatcgtgtgatatatgatttgagggg |
29587050 |
T |
|
| Q |
116 |
agagaagagaacttacatgcttaatgattttcaaattcaatttacggtgacttattcttctatgactttagctgatgcagtttttgtttctaattacaaa |
215 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| ||||||||||||| | ||||||||||||||||| ||||||||||||||||||||||||||||| || |
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| T |
29587049 |
agagaggagaacttacatgcttaatgcttttccaattcaatttacgacggcttattcttctatgactctagctgatgcagtttttgtttctaattaccaa |
29586950 |
T |
|
| Q |
216 |
aaataagggaagttatgttgatagtggattgaatactaatgttgctatta-tttctctcaagtgcagccactaagccaaataattaggaggtatattgtg |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
29586949 |
aaataagggaagttatgttgatagtggattgaatactaatgttgctattattttctctcaagtgcagccactaagccaaataattaggaagtatattgtg |
29586850 |
T |
|
| Q |
315 |
caacctatg |
323 |
Q |
| |
|
||||||||| |
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|
| T |
29586849 |
caacctatg |
29586841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 16 - 192
Target Start/End: Complemental strand, 9992926 - 9992746
Alignment:
| Q |
16 |
agaattgataaggaacattaattggcctctgtattataatttgagacatgaatttgggtaccttggaacttctcaatcgtgtggtatatgatttgagggg |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||| |||| |||||||||||||||| |||| |||||||||| |||||||||||||||||||| || |
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|
| T |
9992926 |
agaattgataaggaacattaattggcctctgtagtatagtttgtgacatgaatttgggtatcttgaaacttctcaaccgtgtggtatatgatttgagagg |
9992827 |
T |
|
| Q |
116 |
agagaagagaacttacatgcttaatgattttcaaattcaatttacggtga----cttattcttctatgactttagctgatg |
192 |
Q |
| |
|
||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| ||| ||||| |
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| T |
9992826 |
agagaggagaacttacatgcttaatgcttttcaaattcaatttacggtgacttacttattcttctatgactctagttgatg |
9992746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 197 - 323
Target Start/End: Complemental strand, 9992598 - 9992472
Alignment:
| Q |
197 |
ttttgtttctaattacaaaaaataagggaagttatgttgatagtggattgaatactaatgttgctattatttctctcaagtgcagccactaagccaaata |
296 |
Q |
| |
|
|||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9992598 |
ttttgtttctaattaccaaaaataagggaacttatgttgatagtggattgaatactaatgttgctattatttctctcaagtgcagccactaagccaaata |
9992499 |
T |
|
| Q |
297 |
attaggaggtatattgtgcaacctatg |
323 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
9992498 |
attaggaggtatattgtgcaacctatg |
9992472 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 41943780 - 41943835
Alignment:
| Q |
251 |
ctaatgttgctattatttctctcaa-gtgcagccactaagccaaataattaggagg |
305 |
Q |
| |
|
|||||||||| |||||||||| ||| || ||||||||||||||||||||||||||| |
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|
| T |
41943780 |
ctaatgttgccattatttctcacaatgtacagccactaagccaaataattaggagg |
41943835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 251 - 305
Target Start/End: Original strand, 10345414 - 10345467
Alignment:
| Q |
251 |
ctaatgttgctattatttctctcaagtgcagccactaagccaaataattaggagg |
305 |
Q |
| |
|
|||||||||| |||||||||| ||||| ||||||||||||| ||||||||||||| |
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|
| T |
10345414 |
ctaatgttgccattatttctcacaagtacagccactaagcc-aataattaggagg |
10345467 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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