View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14924_high_1 (Length: 762)

Name: NF14924_high_1
Description: NF14924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14924_high_1
NF14924_high_1
[»] chr5 (9 HSPs)
chr5 (17-757)||(18243938-18244696)
chr5 (16-151)||(10591906-10592040)
chr5 (16-151)||(2804510-2804643)
chr5 (52-151)||(3741106-3741205)
chr5 (17-120)||(22188027-22188127)
chr5 (45-121)||(30785042-30785118)
chr5 (16-151)||(2798343-2798476)
chr5 (16-91)||(5123526-5123600)
chr5 (52-97)||(2651540-2651585)
[»] chr8 (20 HSPs)
chr8 (18-153)||(36994530-36994664)
chr8 (16-152)||(12958113-12958248)
chr8 (16-121)||(19715754-19715858)
chr8 (16-139)||(13468773-13468895)
chr8 (16-121)||(30056029-30056133)
chr8 (44-152)||(2743911-2744019)
chr8 (16-151)||(4125052-4125186)
chr8 (16-121)||(15682938-15683042)
chr8 (16-152)||(30935982-30936117)
chr8 (31-151)||(33404325-33404444)
chr8 (44-149)||(4321559-4321664)
chr8 (52-140)||(35206990-35207078)
chr8 (90-152)||(13005770-13005832)
chr8 (41-122)||(16701431-16701512)
chr8 (52-148)||(23981536-23981632)
chr8 (16-79)||(7839281-7839343)
chr8 (41-120)||(11363279-11363357)
chr8 (51-120)||(27226650-27226719)
chr8 (98-151)||(39086797-39086850)
chr8 (77-122)||(44705680-44705725)
[»] chr4 (15 HSPs)
chr4 (16-155)||(38766064-38766202)
chr4 (16-152)||(31307094-31307229)
chr4 (20-152)||(35972321-35972452)
chr4 (25-153)||(13686578-13686706)
chr4 (25-151)||(14854584-14854709)
chr4 (44-149)||(7096077-7096182)
chr4 (47-151)||(11140436-11140540)
chr4 (44-152)||(45994500-45994608)
chr4 (16-123)||(46016153-46016262)
chr4 (18-153)||(22189418-22189552)
chr4 (17-121)||(35334127-35334230)
chr4 (28-121)||(38844208-38844300)
chr4 (41-147)||(29597456-29597562)
chr4 (28-121)||(17135106-17135197)
chr4 (52-137)||(48998068-48998153)
[»] chr7 (22 HSPs)
chr7 (45-151)||(8839337-8839443)
chr7 (16-151)||(29059784-29059918)
chr7 (16-152)||(19477277-19477412)
chr7 (16-152)||(13254129-13254264)
chr7 (16-122)||(31492111-31492216)
chr7 (18-154)||(40099302-40099437)
chr7 (17-152)||(7265342-7265476)
chr7 (25-152)||(28537368-28537494)
chr7 (44-139)||(27484104-27484199)
chr7 (16-151)||(46373652-46373786)
chr7 (41-121)||(5905831-5905911)
chr7 (41-111)||(30614734-30614804)
chr7 (41-147)||(40211936-40212042)
chr7 (17-110)||(23933680-23933772)
chr7 (45-149)||(7190415-7190519)
chr7 (52-152)||(21411687-21411787)
chr7 (54-153)||(2371125-2371224)
chr7 (44-151)||(21747095-21747201)
chr7 (99-149)||(5546679-5546729)
chr7 (57-131)||(22315839-22315913)
chr7 (86-152)||(46567655-46567721)
chr7 (86-151)||(38304970-38305035)
[»] chr2 (21 HSPs)
chr2 (16-151)||(42745144-42745278)
chr2 (44-152)||(12133285-12133393)
chr2 (25-148)||(993736-993857)
chr2 (16-153)||(5394374-5394509)
chr2 (16-151)||(31579257-31579391)
chr2 (44-151)||(44732628-44732735)
chr2 (41-140)||(13153975-13154074)
chr2 (17-152)||(44752223-44752357)
chr2 (44-152)||(17981476-17981584)
chr2 (47-151)||(37568785-37568889)
chr2 (29-144)||(34483448-34483561)
chr2 (41-151)||(24359544-24359653)
chr2 (16-116)||(14121910-14122009)
chr2 (64-151)||(28365928-28366015)
chr2 (28-99)||(39314477-39314547)
chr2 (52-121)||(18105425-18105494)
chr2 (52-120)||(9438199-9438267)
chr2 (18-146)||(17627543-17627670)
chr2 (95-149)||(7020464-7020518)
chr2 (44-121)||(7157507-7157584)
chr2 (99-152)||(33756955-33757008)
[»] chr3 (16 HSPs)
chr3 (16-151)||(25224678-25224812)
chr3 (16-151)||(48204339-48204473)
chr3 (16-151)||(30995993-30996127)
chr3 (24-152)||(38088613-38088740)
chr3 (16-149)||(38331109-38331241)
chr3 (52-129)||(54877834-54877911)
chr3 (45-149)||(22288216-22288320)
chr3 (16-151)||(27763702-27763834)
chr3 (69-152)||(14352532-14352615)
chr3 (57-107)||(39950235-39950285)
chr3 (25-73)||(25739144-25739191)
chr3 (41-121)||(50518606-50518686)
chr3 (16-79)||(20861299-20861361)
chr3 (44-148)||(42514586-42514692)
chr3 (16-148)||(15283057-15283184)
chr3 (52-122)||(22755652-22755722)
[»] chr1 (21 HSPs)
chr1 (17-152)||(22022098-22022232)
chr1 (52-152)||(17600561-17600661)
chr1 (44-151)||(16756061-16756168)
chr1 (41-152)||(36982333-36982444)
chr1 (44-151)||(45806215-45806322)
chr1 (41-118)||(32883622-32883699)
chr1 (41-121)||(40019250-40019330)
chr1 (64-121)||(21774612-21774669)
chr1 (16-103)||(9781017-9781103)
chr1 (64-121)||(52957423-52957480)
chr1 (45-149)||(10840998-10841102)
chr1 (41-148)||(35692467-35692574)
chr1 (52-149)||(10750579-10750676)
chr1 (52-121)||(29124754-29124823)
chr1 (41-118)||(31733743-31733820)
chr1 (16-89)||(36806652-36806724)
chr1 (43-94)||(7242861-7242912)
chr1 (16-122)||(12035557-12035663)
chr1 (69-151)||(9639631-9639713)
chr1 (43-152)||(28724651-28724759)
chr1 (16-89)||(36522264-36522336)
[»] scaffold0182 (1 HSPs)
scaffold0182 (16-122)||(26339-26444)
[»] chr6 (17 HSPs)
chr6 (44-151)||(25084013-25084120)
chr6 (18-148)||(278374-278502)
chr6 (16-153)||(12411125-12411261)
chr6 (52-148)||(423637-423733)
chr6 (17-152)||(21910183-21910317)
chr6 (18-122)||(21029009-21029116)
chr6 (44-149)||(31107548-31107653)
chr6 (29-151)||(5944821-5944942)
chr6 (55-121)||(15614639-15614705)
chr6 (16-121)||(28933147-28933251)
chr6 (41-149)||(26477751-26477859)
chr6 (16-123)||(28099250-28099356)
chr6 (16-151)||(31412102-31412235)
chr6 (16-96)||(12836925-12837004)
chr6 (52-147)||(7468603-7468698)
chr6 (82-148)||(8507136-8507202)
chr6 (55-148)||(17457132-17457225)
[»] scaffold0020 (1 HSPs)
scaffold0020 (64-151)||(167834-167919)
[»] scaffold0009 (1 HSPs)
scaffold0009 (55-122)||(32330-32397)


Alignment Details
Target: chr5 (Bit Score: 555; Significance: 0; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 555; E-Value: 0
Query Start/End: Original strand, 17 - 757
Target Start/End: Complemental strand, 18244696 - 18243938
Alignment:
Q  17 attgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaa 116  Q
    ||||||||||||||||||| || |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||       ||||||||| |||||    
T  18244696 attgtggaacccaaatgggtggaaaaa-tctcccaaagagttttaatgctgctgcatgttcaagactgaattcaaacc-------ttggttaagttagaa 18244605  T
Q  117 gagaccgatgtcatctaatctaagcgctcttgggtagacgaaaacctagttgattcaacatac---------------------tcctatcatttttcta 195  Q
    |||||   |||||| ||||||||  ||||||||||| |||||||||||||||||||||||||                      ||||||||||||||||    
T  18244604 gagacaagtgtcatttaatctaaatgctcttgggtaaacgaaaacctagttgattcaacataaaacctagttgattcaacatattcctatcatttttcta 18244505  T
Q  196 ttttctataggggaatcaagttaaaaatatttttt-cagttttaaattgcgatggcggccacaatattaggtctttgaaatcatcactaatgtaaatata 294  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18244504 ttttctataggggaatcaagttaaaaatatttttttcagttttaaattgcgatggcggccacaatattaggtctttgaaatcatcactaatgtaaatata 18244405  T
Q  295 acccttcattctttgtcacacatatgatata----agcatgttcttttgtagtttcagtcctattaattaacataatttggtttaatttgaagttggtag 390  Q
    |||||||||||||||||||||||||||||||    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  18244404 acccttcattctttgtcacacatatgatatatataagcatgttcttttgtagtttcagtccaattaattaacataatttggtttaatttgaagttggtag 18244305  T
Q  391 aagcaatgacatggtggaagaaccattcaatcagatcagatactgggatggcactaaagatgaatatcagcaactaaatggtttctaccatcattatcct 490  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  18244304 aagcaatgacatggtggaagaaccattcaatcagatcagatactgggatggcactaaagatgaatatcaacaactaaatggtttctaccatcattatcct 18244205  T
Q  491 caacaatatttgatgacaaagcaaaatcaaaacaatcacaattttcaaattttctcaaattcatcagcagcatcagcaacacatcataatgcagaaaaca 590  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18244204 caacaatatttgatgacaaagcaaaatcaaaacaatcacaattttcacattttctcaaattcatcagcagcatcagcaacacatcataatgcagaaaaca 18244105  T
Q  591 gtgaaaaagttctgattgatgacaccccagatgctgttgaaactcctcaattttttgacttccttggagtaggtgctacatgatcttcaaataagtccnn 690  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  18244104 gtgaaaaagttctggttgatgacaccccagatgctgttgaaactcctcaattttttgacttccttggagtaggtgctacatgatcttcaaataagtccaa 18244005  T
Q  691 nnnnngctgcagaattttccacggaagttgctcaatataggtgtggtccaacaagtcattcatttca 757  Q
         ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18244004 aaaaagctgcagaattttccacggaagttgctcaatataggtgtggtccaacaagtcattcatttca 18243938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 16 - 151
Target Start/End: Complemental strand, 10592040 - 10591906
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    |||||||| || ||||||||||||| | ||||||| |||||||||||  |||||||||| ||||| ||| |||| |||||| |||||||||||| |||||    
T  10592040 cattgtgggactcaaatgggcggcaga-ctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaatctaga 10591942  T
Q  116 agagaccgatgtcatctaatctaagcgctcttgggt 151  Q
    |||||||  |  ||||| ||||||| ||||||||||    
T  10591941 agagacccgttccatctcatctaagtgctcttgggt 10591906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 2804510 - 2804643
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    |||||| ||| |||||||||||| ||  ||||||| || |||||||| |||||||||||  ||||  || |||| ||||||| |||||||||||||||||    
T  2804510 cattgtagaaaccaaatgggcggtaag-ctctccctaaaagttttaacgctgctgcatgctcaaggttggattcgaacccaaaaccttggttaagctaga 2804608  T
Q  116 agagaccgatgtcatctaatctaagcgctcttgggt 151  Q
    ||| |||| | |||||| ||||||  ||||||||||    
T  2804609 agaaaccg-tttcatctcatctaactgctcttgggt 2804643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 52 - 151
Target Start/End: Complemental strand, 3741205 - 3741106
Alignment:
Q  52 aagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgctcttgggt 151  Q
    ||||||||||| | |||| ||| || |||||||||||||||| || |||| |||||||||||||||||||  | | ||||| |||||| |||||||||||    
T  3741205 aagagttttaacgttgcttcatttctaagactgaattcaaactcacgaccatggttaagctagaagagacacacgacatctcatctaaacgctcttgggt 3741106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 22188027 - 22188127
Alignment:
Q  17 attgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaa 116  Q
    ||||||| |||||||| ||||||| | ||||||  ||||||||||| |||| || ||| ||||| ||| |||||||||||| |||||||||||| |||||    
T  22188027 attgtgggacccaaataggcggcaga-ctctcc--aagagttttaacgctgttgtatgcccaaggctggattcaaacccaataccttggttaagttagaa 22188123  T
Q  117 gaga 120  Q
    ||||    
T  22188124 gaga 22188127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 45 - 121
Target Start/End: Original strand, 30785042 - 30785118
Alignment:
Q  45 tctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 121  Q
    |||||| ||||||||||| | ||||||||||||||  ||| |||| |||||||||| ||| ||||||||||||||||    
T  30785042 tctccctaagagttttaacgttgctgcatgtccaaagctggattcgaacccaagacattgattaagctagaagagac 30785118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 2798343 - 2798476
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    |||||| ||| |||||||||||| ||  ||||||| || |||||||| |||||||||||  ||||  || |||| ||||||  |||||||||||||||||    
T  2798343 cattgtagaaaccaaatgggcggtaag-ctctccctaaaagttttaacgctgctgcatgctcaaggttggattcgaacccagaaccttggttaagctaga 2798441  T
Q  116 agagaccgatgtcatctaatctaagcgctcttgggt 151  Q
    ||| |||| | |||||| ||||||  ||||||||||    
T  2798442 agaaaccg-tttcatctcatctaactgctcttgggt 2798476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 91
Target Start/End: Original strand, 5123526 - 5123600
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaa 91  Q
    |||||||| ||||||||||||||||   ||||||| |||||||||||  |||||||||| ||||| ||||||||||    
T  5123526 cattgtgggacccaaatgggcggcagg-ctctccctaagagttttaacactgctgcatgcccaaggctgaattcaa 5123600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 97
Target Start/End: Original strand, 2651540 - 2651585
Alignment:
Q  52 aagagttttaatgctgctgcatgtccaagactgaattcaaacccaa 97  Q
    ||||||||||| |||||||||| ||||||| ||||||| |||||||    
T  2651540 aagagttttaacgctgctgcatctccaagattgaattcgaacccaa 2651585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 68; Significance: 6e-30; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 36994530 - 36994664
Alignment:
Q  18 ttgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaag 117  Q
    |||||| |||||||||||| ||||| ||||||  ||||||||||| ||||||||||||||||| ||| |||| |||||| |||||||||||| |||||||    
T  36994530 ttgtgggacccaaatgggcagcaaa-ctctccttaagagttttaacgctgctgcatgtccaaggctggattcgaacccaggaccttggttaaactagaag 36994628  T
Q  118 agaccgatgtcatctaatctaagcgctcttgggtag 153  Q
    ||||   || ||||| ||||||||||||||||||||    
T  36994629 agacatgtgccatcttatctaagcgctcttgggtag 36994664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 12958113 - 12958248
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    |||||||| ||||||||||||| ||   ||||||| ||||||||||| ||||||||||| ||||  ||| ||||||||||| ||||||||||||||||||    
T  12958113 cattgtgggacccaaatgggcgacagg-ctctccctaagagttttaacgctgctgcatgcccaatgctggattcaaacccatgaccttggttaagctaga 12958211  T
Q  116 agagaccgatgtcatctaatctaagcgctcttgggta 152  Q
    ||||||   |  ||||| |||||||| ||||||||||    
T  12958212 agagactagttccatctcatctaagcactcttgggta 12958248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 19715754 - 19715858
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    |||||||| |||||||||||||||||  |||||||  |||||||||| ||||||||||| ||||| ||| |||| |||||| ||||||||||||||||||    
T  19715754 cattgtgggacccaaatgggcggcaag-ctctccctgagagttttaacgctgctgcatgcccaaggctggattcgaacccaggaccttggttaagctaga 19715852  T
Q  116 agagac 121  Q
    | ||||    
T  19715853 aaagac 19715858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 16 - 139
Target Start/End: Original strand, 13468773 - 13468895
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    |||||||| || ||||||||||||| | ||||| | ||||||||||| |||||| |||| ||||| ||| |||| |||||| ||||||||||||||||||    
T  13468773 cattgtgggactcaaatgggcggcaga-ctctctctaagagttttaacgctgctacatgcccaaggctggattcgaacccaggaccttggttaagctaga 13468871  T
Q  116 agagaccgatgtcatctaatctaa 139  Q
    |||||||  |  ||||||||||||    
T  13468872 agagacccgttccatctaatctaa 13468895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 16 - 121
Target Start/End: Original strand, 30056029 - 30056133
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    ||||||||||||||||||| |||||   ||||||| ||||||||||||||||||||||| | ||| ||| |||  |||||| |||||| |||||||||||    
T  30056029 cattgtggaacccaaatggacggcagg-ctctccctaagagttttaatgctgctgcatgcctaaggctggatttgaacccatgaccttcgttaagctaga 30056127  T
Q  116 agagac 121  Q
    ||||||    
T  30056128 agagac 30056133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 44 - 152
Target Start/End: Complemental strand, 2744019 - 2743911
Alignment:
Q  44 ctctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgc 143  Q
    ||||||| |||||||||||  |||||||||| ||||| ||| |||| |||||| |||||||||||||||||||||||||  |  ||||| ||||||  ||    
T  2744019 ctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgttccatctcatctaaatgc 2743920  T
Q  144 tcttgggta 152  Q
    |||||||||    
T  2743919 tcttgggta 2743911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 4125052 - 4125186
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    |||||||| ||||||||||||||||   ||||||| |||||||||||   ||||||||| ||||| ||  |||| |||||| ||| ||||||||||||||    
T  4125052 cattgtgggacccaaatgggcggcagg-ctctccctaagagttttaacagtgctgcatgcccaaggcttgattcgaacccaggacattggttaagctaga 4125150  T
Q  116 agagaccgatgtcatctaatctaagcgctcttgggt 151  Q
    |||||||  |  ||||| ||||||| ||||||||||    
T  4125151 agagacccgttccatctcatctaagtgctcttgggt 4125186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 15683042 - 15682938
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    |||||||| ||| ||||||||||||   ||||||| ||||||||||| ||||||||||| ||||| ||| |||| ||| || ||||||| ||||||||||    
T  15683042 cattgtgggacctaaatgggcggcagg-ctctccctaagagttttaacgctgctgcatgcccaaggctggattcgaactcaggaccttgattaagctaga 15682944  T
Q  116 agagac 121  Q
    ||||||    
T  15682943 agagac 15682938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 30936117 - 30935982
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    |||||| | ||||||||||||||||   ||||||| ||||||||||| | |||||||||   ||| ||| |||| ||| || ||||||||||||| ||||    
T  30936117 cattgtcggacccaaatgggcggcagg-ctctccctaagagttttaacgttgctgcatgcttaaggctggattcgaactcaggaccttggttaagttaga 30936019  T
Q  116 agagaccgatgtcatctaatctaagcgctcttgggta 152  Q
    |||||||  |  ||||| ||||||| |||||||||||    
T  30936018 agagacccgttccatctcatctaagtgctcttgggta 30935982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 31 - 151
Target Start/End: Original strand, 33404325 - 33404444
Alignment:
Q  31 atgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcat 130  Q
    |||||||| ||||||| ||| || ||||||||||||||| ||||   || | || ||||||||||| ||| |||||| ||||| |||||||   ||||||    
T  33404325 atgggcgg-aaaactcaccctaaaagttttaatgctgctacatgcttaaaattggattcaaacccatgactttggttgagctataagagacttgtgtcat 33404423  T
Q  131 ctaatctaagcgctcttgggt 151  Q
    || ||||||||||||||||||    
T  33404424 ctcatctaagcgctcttgggt 33404444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 44 - 149
Target Start/End: Original strand, 4321559 - 4321664
Alignment:
Q  44 ctctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgc 143  Q
    ||||||| ||||||||||| | |  |||||||| ||||||| |||||||||||  |||||  ||||||||||||| | | ||||||||| |||||| | |    
T  4321559 ctctccctaagagttttaacgttattgcatgtctaagactggattcaaacccagaaccttacttaagctagaagaaatctatgtcatctcatctaaaccc 4321658  T
Q  144 tcttgg 149  Q
    ||||||    
T  4321659 tcttgg 4321664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 35207078 - 35206990
Alignment:
Q  52 aagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaag 140  Q
    ||||||||||| |||||||||||||||||  | ||||| ||||||  | |||||||||| |||||||||||  | |||||| |||||||    
T  35207078 aagagttttaacgctgctgcatgtccaaggttaaattcgaacccagaatcttggttaagttagaagagacctgtttcatctcatctaag 35206990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 90 - 152
Target Start/End: Original strand, 13005770 - 13005832
Alignment:
Q  90 aaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgctcttgggta 152  Q
    |||||||||||||||| |||||||||||||||   || ||||| | |||||||||||||||||    
T  13005770 aaacccaagaccttggataagctagaagagacatgtgacatctcagctaagcgctcttgggta 13005832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 122
Target Start/End: Original strand, 16701431 - 16701512
Alignment:
Q  41 aaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagacc 122  Q
    |||||||||| ||||| ||||| ||| ||| ||||||||| ||| |||| ||||||  ||||| |||||| |||||||||||    
T  16701431 aaactctccctaagaggtttaaagctactgtatgtccaaggctggattcgaacccagaaccttagttaagatagaagagacc 16701512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 52 - 148
Target Start/End: Original strand, 23981536 - 23981632
Alignment:
Q  52 aagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgctcttg 148  Q
    ||||||||||| | | ||||||||||||  |||||||| || |||  ||| | ||||||||| |||||||   |||||||| |||||||||||||||    
T  23981536 aagagttttaacgttcctgcatgtccaaagctgaattcgaatccagaaccctagttaagctaaaagagactcgtgtcatctgatctaagcgctcttg 23981632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Original strand, 7839281 - 7839343
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaa 79  Q
    |||||||| ||||||||||||||||   ||||||| ||||||||||| ||||||||||| ||||    
T  7839281 cattgtgggacccaaatgggcggcatg-ctctccctaagagttttaaagctgctgcatgcccaa 7839343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 120
Target Start/End: Complemental strand, 11363357 - 11363279
Alignment:
Q  41 aaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagaga 120  Q
    |||||||||| | ||||||||| | || ||||||| |||| |||||||||||| ||| | |||||||||| |||||||||    
T  11363357 aaactctccctaggagttttaacgatgttgcatgttcaaggctgaattcaaactcaata-cttggttaagttagaagaga 11363279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 120
Target Start/End: Complemental strand, 27226719 - 27226650
Alignment:
Q  51 aaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagaga 120  Q
    |||||||||||| |||| | ||||  ||| |||||||||||||||| ||| ||| ||||| |||||||||    
T  27226719 aaagagttttaacgctgttacatgctcaatactgaattcaaacccacgacattgattaagttagaagaga 27226650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 39086850 - 39086797
Alignment:
Q  98 gaccttggttaagctagaagagaccgatgtcatctaatctaagcgctcttgggt 151  Q
    |||||||||||||||||||||| ||  |  ||||| ||||||||||||||||||    
T  39086850 gaccttggttaagctagaagaggcccgttccatctcatctaagcgctcttgggt 39086797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 44705725 - 44705680
Alignment:
Q  77 caagactgaattcaaacccaagaccttggttaagctagaagagacc 122  Q
    |||| ||| |||| ||||||||||||||||||| ||||||||||||    
T  44705725 caaggctggattcgaacccaagaccttggttaaactagaagagacc 44705680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 6e-30; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 38766202 - 38766064
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    |||||||  |||||||||||||||| | ||||||| ||||||||||| ||||||||||| ||||| ||| ||||||||||| ||||||||||||||||||    
T  38766202 cattgtgagacccaaatgggcggcaga-ctctccctaagagttttaacgctgctgcatgcccaaggctggattcaaacccaggaccttggttaagctaga 38766104  T
Q  116 agagaccgatgtcatctaatctaagcgctcttgggtagac 155  Q
    ||||||   |  ||||| ||||||||||||||| ||||||    
T  38766103 agagactcgttccatctcatctaagcgctcttgagtagac 38766064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 31307094 - 31307229
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    |||||||| ||||||||||||||||   ||||||| |||||||||||  |||||||||| ||||| ||| |||| |||||| ||||||||||||||||||    
T  31307094 cattgtgggacccaaatgggcggcagg-ctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctaga 31307192  T
Q  116 agagaccgatgtcatctaatctaagcgctcttgggta 152  Q
    |||||||  |  ||||| ||||||| |||||||||||    
T  31307193 agagacccgttccatctcatctaagtgctcttgggta 31307229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 20 - 152
Target Start/End: Complemental strand, 35972452 - 35972321
Alignment:
Q  20 gtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagag 119  Q
    |||| |||||||||||||||||| ||||||| || |||||||| ||||||| ||| ||| | ||| |||| |||||||||||||||||||||||||||||    
T  35972452 gtgggacccaaatgggcggcaaa-ctctccctaatagttttaacgctgctgtatgcccatggctggattcgaacccaagaccttggttaagctagaagag 35972354  T
Q  120 accgatgtcatctaatctaagcgctcttgggta 152  Q
     ||  |  ||||| |||||||||||||||||||    
T  35972353 gcccgttccatctcatctaagcgctcttgggta 35972321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 25 - 153
Target Start/End: Complemental strand, 13686706 - 13686578
Alignment:
Q  25 acccaaatgggcggcaaaactctccca-aagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccg 123  Q
    |||||||||| ||||||| |||||||  ||||||||||| ||||||||| | |||||  || |||| |||||| |||||||||||||| ||||||||||     
T  13686706 acccaaatggacggcaaa-ctctcccttaagagttttaacgctgctgcacgcccaaggatggattcgaacccaggaccttggttaagcaagaagagaccc 13686608  T
Q  124 atgtcatctaatctaagcgctcttgggtag 153  Q
    ||| ||||| ||||||||||||||||||||    
T  13686607 atgccatctcatctaagcgctcttgggtag 13686578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 25 - 151
Target Start/End: Complemental strand, 14854709 - 14854584
Alignment:
Q  25 acccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccga 124  Q
    |||||||||||||||||  ||||||| ||||||||||| | ||||||||| ||||| ||| |||| ||||||  |||||||||||||||||||||| |      
T  14854709 acccaaatgggcggcaag-ctctccctaagagttttaacgatgctgcatgcccaaggctggattcgaacccagaaccttggttaagctagaagagaaccg 14854611  T
Q  125 tgtcatctaatctaagcgctcttgggt 151  Q
    |  ||||| ||||||||||||||||||    
T  14854610 ttccatctcatctaagcgctcttgggt 14854584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 44 - 149
Target Start/End: Complemental strand, 7096182 - 7096077
Alignment:
Q  44 ctctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgc 143  Q
    ||||||| |||||||||||   ||||||||   |||||||| |||||||||||| |||||||||||||||||||| |||  |||||||| |||||||||     
T  7096182 ctctccctaagagttttaactttgctgcatactcaagactgtattcaaacccaaaaccttggttaagctagaagaaacctgtgtcatctcatctaagcgt 7096083  T
Q  144 tcttgg 149  Q
    ||||||    
T  7096082 tcttgg 7096077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 47 - 151
Target Start/End: Complemental strand, 11140540 - 11140436
Alignment:
Q  47 tcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgctct 146  Q
    |||| ||||||||||| ||||||||||| ||||| ||| |||| || ||| ||||||||||||||||||||| | |  ||| |||| |||||||||||||    
T  11140540 tccctaagagttttaaagctgctgcatgcccaaggctggattcgaaaccaggaccttggttaagctagaagatagccgtgttatcttatctaagcgctct 11140441  T
Q  147 tgggt 151  Q
    |||||    
T  11140440 tgggt 11140436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 44 - 152
Target Start/End: Complemental strand, 45994608 - 45994500
Alignment:
Q  44 ctctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgc 143  Q
    ||||||| ||||||||||| | || |||||| ||||| ||| |||| || ||| |||||||||||||||||||||||||  |  ||||| |||||| |||    
T  45994608 ctctccctaagagttttaacgttgttgcatgcccaaggctggattcgaatccaggaccttggttaagctagaagagacctgttccatctcatctaaacgc 45994509  T
Q  144 tcttgggta 152  Q
    |||||||||    
T  45994508 tcttgggta 45994500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 46016262 - 46016153
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagac---cttggttaagct 112  Q
    |||||||| ||||||||||||||||   ||||||| |||||||||||  |||||||||| ||||| ||| |||| |||||| |||   ||||||||||||    
T  46016262 cattgtgggacccaaatgggcggcagg-ctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggacctacttggttaagct 46016164  T
Q  113 agaagagaccg 123  Q
    |||||||||||    
T  46016163 agaagagaccg 46016153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 18 - 153
Target Start/End: Original strand, 22189418 - 22189552
Alignment:
Q  18 ttgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaag 117  Q
    |||||| ||||| || ||||||||  |||| || ||||||||||||| |||||||||  ||||  || |||| ||| |  ||||||||||||||||||||    
T  22189418 ttgtgggacccatataggcggcaat-ctctacctaagagttttaatgttgctgcatgcacaaggttggattcgaactctggaccttggttaagctagaag 22189516  T
Q  118 agaccgatgtcatctaatctaagcgctcttgggtag 153  Q
    ||||  ||||||||| ||||||| ||||||| ||||    
T  22189517 agactcatgtcatctcatctaagtgctcttgagtag 22189552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 17 - 121
Target Start/End: Original strand, 35334127 - 35334230
Alignment:
Q  17 attgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaa 116  Q
    ||||||| |||||||||||||||  | ||||| | |||||||||||  |||||||||| ||||| |||||| | |||| |  ||||||||||||||||||    
T  35334127 attgtgggacccaaatgggcggcgga-ctctctctaagagttttaactctgctgcatgcccaaggctgaatacgaaccaagaaccttggttaagctagaa 35334225  T
Q  117 gagac 121  Q
    |||||    
T  35334226 gagac 35334230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 38844208 - 38844300
Alignment:
Q  28 caaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 121  Q
    ||||||||||||| | |||| || ||||||||||| |||| |||||| ||||  ||| |||| ||| || ||||||||||||||||||||||||    
T  38844208 caaatgggcggcaga-ctcttcctaagagttttaacgctgttgcatgcccaaagctggattcgaactcatgaccttggttaagctagaagagac 38844300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 41 - 147
Target Start/End: Complemental strand, 29597562 - 29597456
Alignment:
Q  41 aaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaag 140  Q
    |||||||| | ||||||||||| | || |||||| |||||||||||||  ||| ||||||||| |||||| || || | ||   |||||||| ||||||     
T  29597562 aaactctctctaagagttttaacgttgttgcatgcccaagactgaatttgaactcaagacctttgttaagttaaaaaaaactcgtgtcatctcatctaaa 29597463  T
Q  141 cgctctt 147  Q
    |||||||    
T  29597462 cgctctt 29597456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 17135197 - 17135106
Alignment:
Q  28 caaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 121  Q
    |||||| |||||||| ||||||| ||||||||||| |||||||||||  |||| ||| |||| || | | ||| ||| ||||||||||||||||    
T  17135197 caaatgcgcggcaaa-ctctccctaagagttttaacgctgctgcatgcacaaggctggattcgaa-ctaggactttgattaagctagaagagac 17135106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 52 - 137
Target Start/End: Original strand, 48998068 - 48998153
Alignment:
Q  52 aagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatct 137  Q
    ||||||||||| |||| |||||||||||||||  |||| ||| || ||||||| ||||| || ||||||   ||||||||| ||||    
T  48998068 aagagttttaacgctgatgcatgtccaagactcgattcgaactcaggaccttgattaagttaaaagagatgcatgtcatcttatct 48998153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 63; Significance: 6e-27; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 8839337 - 8839443
Alignment:
Q  45 tctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgct 144  Q
    |||||| ||||||||||| ||||||||||| ||||| ||| |||| |||||| |||||||||||||||||||||||||  | |||||| |||||||||||    
T  8839337 tctccctaagagttttaacgctgctgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagacccgtttcatctcatctaagcgct 8839436  T
Q  145 cttgggt 151  Q
    |||||||    
T  8839437 cttgggt 8839443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 16 - 151
Target Start/End: Complemental strand, 29059918 - 29059784
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    |||||||| ||||||||||||||||   ||||||| |||||||||||  |||||||||| ||||| ||| |||| |||||| ||||||||||||||||||    
T  29059918 cattgtgggacccaaatgggcggcagg-ctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctaga 29059820  T
Q  116 agagaccgatgtcatctaatctaagcgctcttgggt 151  Q
    |||||||  |  ||||| ||||||| ||||||||||    
T  29059819 agagacccgttccatctcatctaagtgctcttgggt 29059784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 19477277 - 19477412
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    |||||||| |||||||||| ||||||  ||||||| |||||||||||  ||| |||||| ||||| ||| |||||||||||  |||||||||||||||||    
T  19477277 cattgtgggacccaaatggccggcaag-ctctccctaagagttttaacactgttgcatgcccaaggctggattcaaacccagaaccttggttaagctaga 19477375  T
Q  116 agagaccgatgtcatctaatctaagcgctcttgggta 152  Q
    |||||||  |  ||||| |||||| ||||||||||||    
T  19477376 agagacccgttccatctcatctaaacgctcttgggta 19477412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 16 - 152
Target Start/End: Original strand, 13254129 - 13254264
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    |||||||| ||| ||||||||||||   ||||||| |||||||| || ||||||||||| | ||| ||| |||| ||| || ||||||||||||||||||    
T  13254129 cattgtgggacctaaatgggcggcagg-ctctccctaagagtttcaacgctgctgcatgcctaaggctggattcgaactcaggaccttggttaagctaga 13254227  T
Q  116 agagaccgatgtcatctaatctaagcgctcttgggta 152  Q
    |||||||  |  ||||| |||||||||||||||||||    
T  13254228 agagacccgttccatctcatctaagcgctcttgggta 13254264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 31492216 - 31492111
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    |||||||| ||| ||||||||||||   ||||||| |||||||||||  |||||||||| ||||| ||| |||| |||||| ||||||||||||||||||    
T  31492216 cattgtgggacctaaatgggcggcagg-ctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctaga 31492118  T
Q  116 agagacc 122  Q
    |||||||    
T  31492117 agagacc 31492111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 40099302 - 40099437
Alignment:
Q  18 ttgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaag 117  Q
    |||||| || ||||||||||||||  ||||||| |||||||||||||||||||||| |||||  ||| |||| ||  || || ||| |||||||||||||    
T  40099302 ttgtgggactcaaatgggcggcaag-ctctccctaagagttttaatgctgctgcatatccaaagctggattcgaattcaggatcttagttaagctagaag 40099400  T
Q  118 agaccgatgtcatctaatctaagcgctcttgggtaga 154  Q
    |||||  |  ||||| ||||||||||||| |||||||    
T  40099401 agacccgttccatctcatctaagcgctctcgggtaga 40099437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 7265342 - 7265476
Alignment:
Q  17 attgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaa 116  Q
    ||||||| ||||||||| || ||||| ||||||| |||||||||||    |||||||| ||||||||  || | ||||||| || |||||||||||||||    
T  7265342 attgtgggacccaaatgagcagcaaa-ctctccctaagagttttaacatcgctgcatgcccaagactagatccgaacccaaaactttggttaagctagaa 7265440  T
Q  117 gagaccgatgtcatctaatctaagcgctcttgggta 152  Q
    ||||||  |||||||| || ||| ||||||||||||    
T  7265441 gagacccgtgtcatctcatataaacgctcttgggta 7265476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 25 - 152
Target Start/End: Complemental strand, 28537494 - 28537368
Alignment:
Q  25 acccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccga 124  Q
    ||||||||||||||||   ||||||| ||||||||||| | || |||||| ||||| ||| |||| ||||||| |||||| ||||| |||||||||||      
T  28537494 acccaaatgggcggcagg-ctctccctaagagttttaacgttgttgcatgcccaaggctggattcgaacccaaaaccttgattaagttagaagagacccg 28537396  T
Q  125 tgtcatctaatctaagcgctcttgggta 152  Q
    |  ||||| |||||||||||||||||||    
T  28537395 ttccatctcatctaagcgctcttgggta 28537368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 44 - 139
Target Start/End: Original strand, 27484104 - 27484199
Alignment:
Q  44 ctctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaa 139  Q
    ||||||| ||||||||||| ||||||||||| ||| | ||| ||| |||| || ||||||||||||||||||||||||   |||||||| ||||||    
T  27484104 ctctccccaagagttttaacgctgctgcatgcccatggctggatttaaactcaggaccttggttaagctagaagagacttgtgtcatctcatctaa 27484199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 151
Target Start/End: Complemental strand, 46373786 - 46373652
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    |||||||  |||||||| ||||||||  ||||||| | ||||||||| | || || ||| ||||||||| |||| |||||| || |||| ||||||||||    
T  46373786 cattgtgtgacccaaataggcggcaag-ctctccctacgagttttaacgatgttgtatgcccaagactggattcgaacccaggatcttgcttaagctaga 46373688  T
Q  116 agagaccgatgtcatctaatctaagcgctcttgggt 151  Q
    |||||||   ||||||| ||||||| ||||||||||    
T  46373687 agagacccgcgtcatctcatctaagagctcttgggt 46373652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 5905911 - 5905831
Alignment:
Q  41 aaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 121  Q
    ||||||| || ||||||||||||||||||||||| |||| | || |||||| || ||||| ||||||||| ||||||||||    
T  5905911 aaactcttcccaagagttttaatgctgctgcatgcccaatattggattcaagcctaagacgttggttaagttagaagagac 5905831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 111
Target Start/End: Original strand, 30614734 - 30614804
Alignment:
Q  41 aaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagc 111  Q
    |||||||| | ||||||||||| |||| |||||| |||| ||| |||||||||  ||||||||||||||||    
T  30614734 aaactctctctaagagttttaacgctgatgcatgcccaaaactaaattcaaacttaagaccttggttaagc 30614804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 147
Target Start/End: Complemental strand, 40212042 - 40211936
Alignment:
Q  41 aaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaag 140  Q
    ||||||| || ||||||||||| | || |||||| ||||||||| |||  |||||| ||||||| |||||||| |||| ||  ||||| ||  |||||||    
T  40212042 aaactcttcctaagagttttaacgttgttgcatgcccaagactggatttgaacccatgaccttgattaagctaaaagaaactcatgtcgtcacatctaag 40211943  T
Q  141 cgctctt 147  Q
    |||||||    
T  40211942 cgctctt 40211936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 110
Target Start/End: Original strand, 23933680 - 23933772
Alignment:
Q  17 attgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaag 110  Q
    ||||| ||||| |||||||||||||| ||||||| || ||||||||||||  |||| |  |||||||| |||| |||||| |||||| ||||||    
T  23933680 attgtcgaacctaaatgggcggcaaa-ctctccctaaaagttttaatgctcttgcaagctcaagactggattcgaacccaggaccttagttaag 23933772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 45 - 149
Target Start/End: Original strand, 7190415 - 7190519
Alignment:
Q  45 tctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgct 144  Q
    |||||| || ||||||||  | |||||||| ||||  |||||||||||| ||  ||||||||||||||||||||||   ||  ||||| |||||| ||||    
T  7190415 tctccctaaaagttttaacacggctgcatgcccaatgctgaattcaaactcataaccttggttaagctagaagagatttattccatctcatctaaacgct 7190514  T
Q  145 cttgg 149  Q
    |||||    
T  7190515 cttgg 7190519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 52 - 152
Target Start/End: Original strand, 21411687 - 21411787
Alignment:
Q  52 aagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgctcttgggt 151  Q
    ||||||||||| ||| |||||||  |||  |||||||| ||| ||| ||||| |||||| ||||||||||  ||||||| | || |||||||| ||||||    
T  21411687 aagagttttaacgctactgcatgctcaaatctgaattcgaactcaaaaccttcgttaagttagaagagactcatgtcatttcatataagcgcttttgggt 21411786  T
Q  152 a 152  Q
    |    
T  21411787 a 21411787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 153
Target Start/End: Complemental strand, 2371224 - 2371125
Alignment:
Q  54 gagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgctcttgggtag 153  Q
    ||||||||| ||||||||||  | ||| |||||||| ||  || |||||| || || |||||||||| |  |||||||| |||||||| |||||||||||    
T  2371224 gagttttaacgctgctgcattcctaagcctgaattcgaattcaggaccttagtcaatctagaagagaaccgtgtcatctcatctaagcactcttgggtag 2371125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 151
Target Start/End: Original strand, 21747095 - 21747201
Alignment:
Q  44 ctctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgc 143  Q
    ||||||| ||||||||||| ||||| ||||| | ||  ||| |||| | |||| ||||||||||||| |||||||||||  |  ||||| |||||| |||    
T  21747095 ctctccctaagagttttaacgctgcagcatgcctaaagctggattcga-cccaggaccttggttaagttagaagagacccgttccatctcatctaaacgc 21747193  T
Q  144 tcttgggt 151  Q
    ||||||||    
T  21747194 tcttgggt 21747201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 99 - 149
Target Start/End: Complemental strand, 5546729 - 5546679
Alignment:
Q  99 accttggttaagctagaagagaccgatgtcatctaatctaagcgctcttgg 149  Q
    |||||| ||||||||||||||||  ||||||||| || |||||||||||||    
T  5546729 accttgattaagctagaagagacttatgtcatctcatttaagcgctcttgg 5546679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 57 - 131
Target Start/End: Original strand, 22315839 - 22315913
Alignment:
Q  57 ttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatc 131  Q
    |||||| ||| |||||||||||||  || ||| |||| || ||||||||||||| ||||||||||  ||||||||    
T  22315839 ttttaaggctcctgcatgtccaaggttggattgaaactcatgaccttggttaagttagaagagacatatgtcatc 22315913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 46567655 - 46567721
Alignment:
Q  86 attcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgctcttgggta 152  Q
    ||||||||||||||||||| ||||| || || ||||| ||||||||| |||||| || | |||||||    
T  46567655 attcaaacccaagaccttgattaagttaaaaaagacctatgtcatctcatctaatcgtttttgggta 46567721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 86 - 151
Target Start/End: Original strand, 38304970 - 38305035
Alignment:
Q  86 attcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgctcttgggt 151  Q
    |||||||||||  |||||||||||| ||||||||| | | | |||||||||||| ||||| |||||    
T  38304970 attcaaacccagaaccttggttaagttagaagagatccacgacatctaatctaaacgctcgtgggt 38305035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 60; Significance: 3e-25; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 42745144 - 42745278
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    ||||||||||||||||| ||| ||| | ||||||| |||||||||||   ||||||||| ||||| ||| |||| ||||||||||||||||||||||| |    
T  42745144 cattgtggaacccaaataggcagcaga-ctctccctaagagttttaacattgctgcatgcccaaggctggattcgaacccaagaccttggttaagctata 42745242  T
Q  116 agagaccgatgtcatctaatctaagcgctcttgggt 151  Q
    |||||||  |  ||||| ||||||||||||||||||    
T  42745243 agagacccgttccatctcatctaagcgctcttgggt 42745278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 44 - 152
Target Start/End: Original strand, 12133285 - 12133393
Alignment:
Q  44 ctctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgc 143  Q
    ||||||| ||||||||||| | ||||||||||||||| ||| |||| |||||| ||||||| ||||||||||||||||   |  ||||| ||||||||||    
T  12133285 ctctccctaagagttttaacgttgctgcatgtccaaggctggattcgaacccatgaccttgattaagctagaagagactcgttccatctcatctaagcgc 12133384  T
Q  144 tcttgggta 152  Q
    |||||||||    
T  12133385 tcttgggta 12133393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 25 - 148
Target Start/End: Complemental strand, 993857 - 993736
Alignment:
Q  25 acccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccga 124  Q
    |||||||||||||||||   |||||| ||||||||||  ||||||||||| |||||  ||||||| |||||| |||||||||||||||| |||||||       
T  993857 acccaaatgggcggcaagt-tctccctaagagttttac-gctgctgcatgcccaaggttgaattcgaacccaggaccttggttaagctataagagacacg 993760  T
Q  125 tgtcatctaatctaagcgctcttg 148  Q
    |||||||| |||||||||||||||    
T  993759 tgtcatctcatctaagcgctcttg 993736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 5394509 - 5394374
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    |||||||| ||||||||||||||||   ||||||| |||||||||||   ||||||||| ||||| ||| |||| |||||| ||||||||||||||||||    
T  5394509 cattgtgggacccaaatgggcggcagg-ctctccctaagagttttaaca-tgctgcatgcccaaggctggattcgaacccaggaccttggttaagctaga 5394412  T
Q  116 agagaccgatgtcatctaatctaagcgctcttgggtag 153  Q
    ||||||   |  ||||| |||||||||||||| |||||    
T  5394411 agagactcgttccatctcatctaagcgctctttggtag 5394374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 31579257 - 31579391
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    |||||||| ||  |||||||||||| | ||||||| || ||||||||  ||| |||||| ||||| ||| |||| |||||||||||||| ||||||||||    
T  31579257 cattgtgggacttaaatgggcggcaga-ctctccctaaaagttttaacactgttgcatgcccaaggctggattcgaacccaagaccttgattaagctaga 31579355  T
Q  116 agagaccgatgtcatctaatctaagcgctcttgggt 151  Q
    |||||||  |  ||||| ||||||| ||||||||||    
T  31579356 agagacccgttacatctcatctaagtgctcttgggt 31579391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 44 - 151
Target Start/End: Original strand, 44732628 - 44732735
Alignment:
Q  44 ctctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgc 143  Q
    ||||||| |||||||||||  |||||||||| ||||| ||| |||| |||||| |||||||||||||||| ||||||||  |  ||||| ||||||| ||    
T  44732628 ctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctataagagacccgttccatctcatctaagtgc 44732727  T
Q  144 tcttgggt 151  Q
    ||||||||    
T  44732728 tcttgggt 44732735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 140
Target Start/End: Original strand, 13153975 - 13154074
Alignment:
Q  41 aaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaag 140  Q
    ||||||| || ||||||||||| | |||||| |||||||||||| |||||||| ||| || | ||||||| ||||||||||  ||||||||| |||||||    
T  13153975 aaactcttcctaagagttttaacgttgctgcgtgtccaagactgtattcaaactcaaaacttgggttaagttagaagagacttatgtcatctcatctaag 13154074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 152
Target Start/End: Original strand, 44752223 - 44752357
Alignment:
Q  17 attgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaa 116  Q
    ||||| |||||||||| || |||||  ||||||||||||||||||| | || |||||| ||||||||  |||| |||| | ||  |||||||||||||||    
T  44752223 attgtagaacccaaattggtggcaag-ctctcccaaagagttttaacgttgttgcatgcccaagacttgattcgaacctaggagtttggttaagctagaa 44752321  T
Q  117 gagaccgatgtcatctaatctaagcgctcttgggta 152  Q
    |||||   | |||||| |||||||||| ||||||||    
T  44752322 gagacttgtatcatctcatctaagcgcacttgggta 44752357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 44 - 152
Target Start/End: Complemental strand, 17981584 - 17981476
Alignment:
Q  44 ctctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgc 143  Q
    ||||||| ||||||||||||| || |||||| ||||||||| ||| |||  || ||| ||||||||||||||||||||   |  ||||| ||||||||||    
T  17981584 ctctccctaagagttttaatgttgttgcatgcccaagactggatttaaattcaggactttggttaagctagaagagactcgttccatctcatctaagcgc 17981485  T
Q  144 tcttgggta 152  Q
    | |||||||    
T  17981484 tattgggta 17981476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 47 - 151
Target Start/End: Original strand, 37568785 - 37568889
Alignment:
Q  47 tcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgctct 146  Q
    |||| |||||||||||  |||||||||| | ||| ||| |||| |||||| ||||||||||||||||||||| |||  |  ||||| ||||||| |||||    
T  37568785 tccctaagagttttaacactgctgcatgcctaaggctggattcgaacccaggaccttggttaagctagaagaaacccgttccatctcatctaagtgctct 37568884  T
Q  147 tgggt 151  Q
    |||||    
T  37568885 tgggt 37568889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 29 - 144
Target Start/End: Complemental strand, 34483561 - 34483448
Alignment:
Q  29 aaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtc 128  Q
    |||||||||| |||||| || | ||||||||||| |||| ||||||||||||||||||||  || |||  || ||||||||||||||| ||||   ||||    
T  34483561 aaatgggcgg-aaaactatctctaagagttttaacgctgttgcatgtccaagactgaatttgaa-ccagaactttggttaagctagaaaagacatgtgtc 34483464  T
Q  129 atctaatctaagcgct 144  Q
    |||| |||||||||||    
T  34483463 atcttatctaagcgct 34483448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 41 - 151
Target Start/End: Complemental strand, 24359653 - 24359544
Alignment:
Q  41 aaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaag 140  Q
    |||||||||| || |||||||||| ||||||||   |||| ||| ||||||||| | ||||||| ||||| ||||||||||  || |||| | |||||||    
T  24359653 aaactctccctaaaagttttaatgttgctgcattatcaaggctggattcaaacctaggaccttgattaagttagaagagact-atttcatatcatctaag 24359555  T
Q  141 cgctcttgggt 151  Q
    |||||||||||    
T  24359554 cgctcttgggt 24359544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 14121910 - 14122009
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    |||||||| || ||||||||||||||   |||| | |||| |||||| | |||||||||| ||||||||||||||||| || |||| |||||| ||||||    
T  14121910 cattgtgggactcaaatgggcggcaagt-tctctctaagaattttaacgttgctgcatgttcaagactgaattcaaactcaggaccctggttaggctaga 14122008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 64 - 151
Target Start/End: Complemental strand, 28366015 - 28365928
Alignment:
Q  64 gctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgctcttgggt 151  Q
    ||||||||||| ||||| ||| |||| ||| || ||||||||||||| ||||||||||   |  ||||| ||||||||||||||||||    
T  28366015 gctgctgcatgcccaaggctgcattcgaactcacgaccttggttaagttagaagagacgcgttccatctcatctaagcgctcttgggt 28365928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 28 - 99
Target Start/End: Complemental strand, 39314547 - 39314477
Alignment:
Q  28 caaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaaga 99  Q
    ||||||||||||||| ||||||| | ||||||||| || |||||||| |||| ||||||||||||| |||||    
T  39314547 caaatgggcggcaaa-ctctccctacgagttttaacgcagctgcatgcccaaaactgaattcaaactcaaga 39314477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 121
Target Start/End: Original strand, 18105425 - 18105494
Alignment:
Q  52 aagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 121  Q
    |||| |||||| | || |||||| ||||| ||| |||| |||||| ||||||||||||||||||||||||    
T  18105425 aagaattttaacgttgttgcatgcccaaggctggattcgaacccaggaccttggttaagctagaagagac 18105494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 52 - 120
Target Start/End: Original strand, 9438199 - 9438267
Alignment:
Q  52 aagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagaga 120  Q
    |||||||||||  |||||||||| ||||| ||| |||| |||| ||||| |||||||||||| ||||||    
T  9438199 aagagttttaaccctgctgcatgcccaaggctggattcgaaccaaagactttggttaagctaaaagaga 9438267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 146
Target Start/End: Complemental strand, 17627670 - 17627543
Alignment:
Q  18 ttgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaag 117  Q
    |||||| || ||||||||| ||||| || |||| |||| |||||| | || |||||| ||||| ||| |||| ||| || ||||||||||||  ||||||    
T  17627670 ttgtgggactcaaatgggcagcaaa-ctttccctaagaattttaacgttgttgcatgcccaaggctggattcgaactcaggaccttggttaaattagaag 17627572  T
Q  118 agaccgatgtcatctaatctaagcgctct 146  Q
    ||||   ||||||||  ||||||||||||    
T  17627571 agacgcgtgtcatctcgtctaagcgctct 17627543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 95 - 149
Target Start/End: Original strand, 7020464 - 7020518
Alignment:
Q  95 caagaccttggttaagctagaagagaccgatgtcatctaatctaagcgctcttgg 149  Q
    ||||||||||||||||||||||||||||  ||  |||| |||||| |||||||||    
T  7020464 caagaccttggttaagctagaagagacccgtgcaatctcatctaaacgctcttgg 7020518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 121
Target Start/End: Complemental strand, 7157584 - 7157507
Alignment:
Q  44 ctctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 121  Q
    ||||||| ||||||||||| | ||||||||| ||||| ||  |||| |||| | || |||||||||| ||||||||||    
T  7157584 ctctccctaagagttttaacgttgctgcatgcccaaggctagattcgaacctaggatcttggttaagttagaagagac 7157507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 152
Target Start/End: Complemental strand, 33757008 - 33756955
Alignment:
Q  99 accttggttaagctagaagagaccgatgtcatctaatctaagcgctcttgggta 152  Q
    |||||| |||||||||||||||||  |||||||| ||||||| | |||||||||    
T  33757008 accttgattaagctagaagagacccgtgtcatctcatctaagtgttcttgggta 33756955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 56; Significance: 8e-23; HSPs: 16)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 16 - 151
Target Start/End: Complemental strand, 25224812 - 25224678
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    |||||||| ||| |||||||||||||   |||||  ||||||||||| ||||||||||  |||| |||  |||| |||||| ||||||||||||||||||    
T  25224812 cattgtgggacctaaatgggcggcaagt-tctccttaagagttttaacgctgctgcattcccaaaacttgattcgaacccaggaccttggttaagctaga 25224714  T
Q  116 agagaccgatgtcatctaatctaagcgctcttgggt 151  Q
    |||||||  | |||||| ||||||||||||||||||    
T  25224713 agagacccgtttcatctcatctaagcgctcttgggt 25224678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 48204339 - 48204473
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    ||||||||||||||||||| || |||  ||||||| ||| ||||||| | ||||||||| ||||| ||| |||| |||||||||||||||||||||||||    
T  48204339 cattgtggaacccaaatggacgacaag-ctctccctaagggttttaacgttgctgcatgcccaaggctggattcgaacccaagaccttggttaagctaga 48204437  T
Q  116 agagaccgatgtcatctaatctaagcgctcttgggt 151  Q
    ||||||   |  ||||| |||||||| |||||||||    
T  48204438 agagactcgttccatctcatctaagcactcttgggt 48204473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 16 - 151
Target Start/End: Original strand, 30995993 - 30996127
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    |||||||| ||||| |||||||||| | ||||||| ||||||||||| |||| |||||| |||||   | |||| |||||| ||||||||||||| ||||    
T  30995993 cattgtgggacccagatgggcggcaga-ctctccctaagagttttaacgctgttgcatgcccaaggtcggattcgaacccaggaccttggttaagataga 30996091  T
Q  116 agagaccgatgtcatctaatctaagcgctcttgggt 151  Q
    |||||||  |  ||||| ||||||||||||||||||    
T  30996092 agagacccgttccatctcatctaagcgctcttgggt 30996127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 24 - 152
Target Start/End: Complemental strand, 38088740 - 38088613
Alignment:
Q  24 aacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccg 123  Q
    ||||||||| ||||||||   |||||| ||||||||||| ||| ||||||| ||||  ||| |||| ||||    ||||||||||||||||||||||||     
T  38088740 aacccaaataggcggcaagt-tctccctaagagttttaacgctactgcatgcccaaagctggattcgaacctggaaccttggttaagctagaagagaccc 38088642  T
Q  124 atgtcatctaatctaagcgctcttgggta 152  Q
     | |||||| |||||||||||||||||||    
T  38088641 gtttcatctcatctaagcgctcttgggta 38088613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 149
Target Start/End: Complemental strand, 38331241 - 38331109
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    |||||||| ||||||||||||||| || ||||| | ||||||||||| |||||||||||  |||   || |||||||| || ||| ||||||||| ||||    
T  38331241 cattgtgggacccaaatgggcggc-aagctctctctaagagttttaacgctgctgcatgctcaaagttggattcaaactcaggacattggttaagttaga 38331143  T
Q  116 agaga-ccgatgtcatctaatctaagcgctcttgg 149  Q
    ||||| |||||  ||||| ||||||||||||||||    
T  38331142 agagacccgat-ccatctcatctaagcgctcttgg 38331109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 129
Target Start/End: Complemental strand, 54877911 - 54877834
Alignment:
Q  52 aagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtca 129  Q
    ||||||||||| | || || ||| ||||| |||||||||||| ||| |||||||||||| ||||||||||| ||||||    
T  54877911 aagagttttaacgttgttggatgcccaaggctgaattcaaactcaaaaccttggttaagttagaagagacccatgtca 54877834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 149
Target Start/End: Complemental strand, 22288320 - 22288216
Alignment:
Q  45 tctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgct 144  Q
    |||||| |||||||||||   || ||||||| |||| |||||||| ||| || ||| ||||||||| |||||||||   ||||||||| |||||||||||    
T  22288320 tctccctaagagttttaacattgttgcatgttcaaggctgaattcgaactcaggactttggttaagttagaagagattcatgtcatctcatctaagcgct 22288221  T
Q  145 cttgg 149  Q
     ||||    
T  22288220 tttgg 22288216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 151
Target Start/End: Complemental strand, 27763834 - 27763702
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    |||||||| || ||||||| ||||| | ||||||| |||||||||||  ||| || ||| ||||| ||| |||| |||||| |||||||||||||||||     
T  27763834 cattgtgggactcaaatggacggcaga-ctctccctaagagttttaacactgttgtatgcccaaggctggattcgaacccaggaccttggttaagctag- 27763737  T
Q  116 agagaccgatgtcatctaatctaagcgctcttgggt 151  Q
     ||||||  |   |||| ||||||||||||||||||    
T  27763736 -gagacccgttctatctcatctaagcgctcttgggt 27763702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 69 - 152
Target Start/End: Complemental strand, 14352615 - 14352532
Alignment:
Q  69 tgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgctcttgggta 152  Q
    |||||||||||| ||| |||| |||| || | |||||||||||||||||||||   |  ||||| |||||||||||||||||||    
T  14352615 tgcatgtccaaggctggattcgaaccgaatatcttggttaagctagaagagacttgttccatctcatctaagcgctcttgggta 14352532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 57 - 107
Target Start/End: Complemental strand, 39950285 - 39950235
Alignment:
Q  57 ttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggtt 107  Q
    |||||| |||||||||||||||| |||| |||| |||||||||||||||||    
T  39950285 ttttaacgctgctgcatgtccaaaactggattctaacccaagaccttggtt 39950235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 25 - 73
Target Start/End: Complemental strand, 25739191 - 25739144
Alignment:
Q  25 acccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcat 73  Q
    |||||||||||||| ||||||||||| ||||||||||||||| ||||||    
T  25739191 acccaaatgggcgg-aaaactctccctaagagttttaatgctcctgcat 25739144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 41 - 121
Target Start/End: Original strand, 50518606 - 50518686
Alignment:
Q  41 aaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 121  Q
    |||||||| | |||||||| || | || ||||||||||||||||||||| ||| || ||| || |||||| ||||||||||    
T  50518606 aaactctctctaagagtttcaacgttgttgcatgtccaagactgaattcgaacacatgacattagttaagttagaagagac 50518686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 20861361 - 20861299
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaa 79  Q
    |||| ||||||||||||||||||||   ||||||| ||||||||||| ||||||||||| ||||    
T  20861361 cattatggaacccaaatgggcggcagg-ctctccctaagagttttaacgctgctgcatgcccaa 20861299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 148
Target Start/End: Complemental strand, 42514692 - 42514586
Alignment:
Q  44 ctctcccaaagagttttaatgc--tgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagc 141  Q
    ||||||| ||||||||||| ||  || |||||| ||||   || |||| |||||||||| || |||||||||||||||||   | |||||| ||||||||    
T  42514692 ctctccctaagagttttaacgcgctgatgcatgcccaaagttggattcgaacccaagactttagttaagctagaagagacacgtttcatctcatctaagc 42514593  T
Q  142 gctcttg 148  Q
    |||||||    
T  42514592 gctcttg 42514586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 16 - 148
Target Start/End: Complemental strand, 15283184 - 15283057
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    |||||||| ||||||||||||||| || || |||  ||||||||||| | ||||||||| ||| ||||| |||| |||||   ||||| |||||| ||||    
T  15283184 cattgtgggacccaaatgggcggc-aatctttccataagagttttaa-gatgctgcatgcccatgactggattcgaaccc---accttagttaagttaga 15283090  T
Q  116 agagaccgatgtcatctaatctaagcgctcttg 148  Q
    ||||||   | |||||| |||||| ||||||||    
T  15283089 agagactcgtatcatctcatctaaacgctcttg 15283057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 52 - 122
Target Start/End: Complemental strand, 22755722 - 22755652
Alignment:
Q  52 aagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagacc 122  Q
    ||||||||||||||||||||||| ||||| ||| |||| |||| |  || |||||||| |||||| |||||    
T  22755722 aagagttttaatgctgctgcatgcccaaggctggattcgaacctagtactttggttaacctagaatagacc 22755652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 8e-23; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 22022232 - 22022098
Alignment:
Q  17 attgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaa 116  Q
    ||||||| ||||||||||| |||||   |||||| ||||||||||||||||||||||| ||||| ||| |||| ||||||  ||||| ||||||||||||    
T  22022232 attgtgggacccaaatgggtggcaagt-tctccctaagagttttaatgctgctgcatgcccaaggctggattcgaacccacaaccttagttaagctagaa 22022134  T
Q  117 gagaccgatgtcatctaatctaagcgctcttgggta 152  Q
    ||||||  |  ||||| |||||| ||||||||||||    
T  22022133 gagacctgttccatctcatctaaacgctcttgggta 22022098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 52 - 152
Target Start/End: Original strand, 17600561 - 17600661
Alignment:
Q  52 aagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgctcttgggt 151  Q
    ||||||||||| | || ||||||  |||| |||||||| ||||||||||||||||||||||||||||||||  |||||||| |||||| |||| ||||||    
T  17600561 aagagttttaacgatgttgcatgctcaaggctgaattctaacccaagaccttggttaagctagaagagacccgtgtcatctcatctaaacgcttttgggt 17600660  T
Q  152 a 152  Q
    |    
T  17600661 a 17600661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 16756168 - 16756061
Alignment:
Q  44 ctctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgc 143  Q
    ||||||| ||||||||||| ||| ||||||| ||||  |||||||||||||||  |||||||||||||||||||||| |  |  ||||| ||||||||||    
T  16756168 ctctccctaagagttttaacgcttctgcatgcccaatgctgaattcaaacccagaaccttggttaagctagaagagatccgttccatctcatctaagcgc 16756069  T
Q  144 tcttgggt 151  Q
    ||||||||    
T  16756068 tcttgggt 16756061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 41 - 152
Target Start/End: Complemental strand, 36982444 - 36982333
Alignment:
Q  41 aaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaag 140  Q
    |||||||||| ||||||||||| | || |||||||| ||| |||||||| ||||| ||||||||||||| ||||||||||||  |||||||| ||||||     
T  36982444 aaactctccctaagagttttaacgttgttgcatgtctaaggctgaattcgaacccgagaccttggttaaactagaagagacctgtgtcatctcatctaaa 36982345  T
Q  141 cgctcttgggta 152  Q
    | ||||| ||||    
T  36982344 ctctcttaggta 36982333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 45806322 - 45806215
Alignment:
Q  44 ctctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgc 143  Q
    ||||||| |||||||||||  |||||||||| |||||||||||||| ||| || ||||||||||||| |||||||||||  |   |||| ||||||||||    
T  45806322 ctctccctaagagttttaaaactgctgcatgcccaagactgaattcgaactcaggaccttggttaagatagaagagacccgttctatctcatctaagcgc 45806223  T
Q  144 tcttgggt 151  Q
    || |||||    
T  45806222 tcctgggt 45806215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 32883622 - 32883699
Alignment:
Q  41 aaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaaga 118  Q
    |||||||||| ||||||||||| ||||||||||||||||  ||| |||| ||||||| | ||||||||||||||||||    
T  32883622 aaactctccctaagagttttaacgctgctgcatgtccaatgctggattcgaacccaaaatcttggttaagctagaaga 32883699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 41 - 121
Target Start/End: Complemental strand, 40019330 - 40019250
Alignment:
Q  41 aaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 121  Q
    |||||||||| ||||||||||| | |||||||| |||||| |||||||| ||||||| |||||| ||||| ||||||||||    
T  40019330 aaactctccccaagagttttaacgttgctgcatatccaaggctgaattcgaacccaaaaccttgattaagttagaagagac 40019250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 21774669 - 21774612
Alignment:
Q  64 gctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 121  Q
    ||||||||||||||||||||| |||| ||||||| |||||| ||||||||||||||||    
T  21774669 gctgctgcatgtccaagactggattcgaacccaaaaccttgattaagctagaagagac 21774612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 16 - 103
Target Start/End: Original strand, 9781017 - 9781103
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagacctt 103  Q
    |||||||| |||||||||||||||  | ||||||| ||||||||||| ||||||||||| ||||| ||| |||| ||| |||||||||    
T  9781017 cattgtgggacccaaatgggcggccga-ctctccctaagagttttaacgctgctgcatgcccaaggctggattcgaactcaagacctt 9781103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 52957480 - 52957423
Alignment:
Q  64 gctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 121  Q
    ||||||||||| | |||||||||||||||||||||||||||||||  ||| |||||||    
T  52957480 gctgctgcatgcctaagactgaattcaaacccaagaccttggttatactaaaagagac 52957423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 45 - 149
Target Start/End: Complemental strand, 10841102 - 10840998
Alignment:
Q  45 tctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgct 144  Q
    |||||| |||| |||||| | || | |||| ||||| |||||||  ||||||| | |||||||||| |||||||||||  | |||||| |||||||||||    
T  10841102 tctccctaagaattttaacgttgttacatgcccaaggctgaatttgaacccaaaatcttggttaagatagaagagacctgtttcatctcatctaagcgct 10841003  T
Q  145 cttgg 149  Q
    |||||    
T  10841002 cttgg 10840998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 41 - 148
Target Start/End: Complemental strand, 35692574 - 35692467
Alignment:
Q  41 aaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaag 140  Q
    |||||||||| ||||||||||| |  | |||||| ||||   || |||| ||| |||||| |||||||| |||||| ||||| ||| ||||| |||||||    
T  35692574 aaactctccctaagagttttaacgtcgttgcatgcccaatgttggattcgaactcaagacattggttaaactagaaaagacccatgccatctcatctaag 35692475  T
Q  141 cgctcttg 148  Q
    ||||||||    
T  35692474 cgctcttg 35692467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 149
Target Start/End: Complemental strand, 10750676 - 10750579
Alignment:
Q  52 aagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgctcttgg 149  Q
    ||||||||||| |||| || ||| |||||| |  |||| |||||||||||||||||||  ||||| ||||   | |||||| ||||||||||||||||    
T  10750676 aagagttttaacgctgatgtatgcccaagattagattcgaacccaagaccttggttaaattagaaaagacatgtttcatctcatctaagcgctcttgg 10750579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 29124823 - 29124754
Alignment:
Q  52 aagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 121  Q
    ||||||||||| ||||||||||| ||||  ||| |||| ||| || |||| |||||||||||||||||||    
T  29124823 aagagttttaacgctgctgcatgcccaatgctggattcgaactcatgaccctggttaagctagaagagac 29124754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 31733743 - 31733820
Alignment:
Q  41 aaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaaga 118  Q
    |||||||||| |||||||||||  |||||||||| | ||  |||||||| ||||||| || ||||||||| |||||||    
T  31733743 aaactctccctaagagttttaactctgctgcatgcctaatgctgaattcgaacccaaaacattggttaagttagaaga 31733820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 36806724 - 36806652
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 89  Q
    |||||||||||||||||||||||| | || ||||| ||||||||||| ||| ||| ||| ||||| ||||||||    
T  36806724 cattgtggaacccaaatgggcggc-agacactccctaagagttttaacgctactgtatgcccaaggctgaattc 36806652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 94
Target Start/End: Original strand, 7242861 - 7242912
Alignment:
Q  43 actctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacc 94  Q
    |||||||| ||||||||||| | ||||||||||||||||||| |||| ||||    
T  7242861 actctccctaagagttttaacgttgctgcatgtccaagactggattcgaacc 7242912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 12035663 - 12035557
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagtttt-aatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctag 114  Q
    |||||||| |||||||||||||||| | ||||||| ||||||||| ||   || |||||| | ||| ||| |||| |||| ||||| |||||||| ||||    
T  12035663 cattgtgggacccaaatgggcggcaga-ctctccctaagagtttttaacaatgttgcatgccaaaggctggattcgaaccaaagactttggttaaactag 12035565  T
Q  115 aagagacc 122  Q
    ||||||||    
T  12035564 aagagacc 12035557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 9639631 - 9639713
Alignment:
Q  69 tgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgctcttgggt 151  Q
    |||||| ||||| ||  |||||||||||| ||  |||||||||| ||||||||   |||||||| || |||||||||||||||    
T  9639631 tgcatgaccaaggctagattcaaacccaaaacactggttaagcttgaagagacatgtgtcatctcatgtaagcgctcttgggt 9639713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 152
Target Start/End: Complemental strand, 28724759 - 28724651
Alignment:
Q  43 actctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcg 142  Q
    ||||| || |||||||||||  ||| ||||||| |||| |||||||| || ||| ||| ||  ||||||||||||||||   |  ||||| |||||||||    
T  28724759 actcttcctaagagttttaacactgttgcatgttcaaggctgaattcgaatccaggacttta-ttaagctagaagagactcgttccatctcatctaagcg 28724661  T
Q  143 ctcttgggta 152  Q
    ||||||||||    
T  28724660 ctcttgggta 28724651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 89
Target Start/End: Original strand, 36522264 - 36522336
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattc 89  Q
    |||||||| || ||||||| ||||||| ||||||| |||||||||||   ||||||||||| ||||||| ||||    
T  36522264 cattgtgggactcaaatggacggcaaa-ctctccctaagagttttaaccttgctgcatgtctaagactgtattc 36522336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 26444 - 26339
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    |||||||| ||||||||||||||||   ||||||| |||||||||||  |||||||||| ||||| ||| |||| |||||| ||||||||||||||||||    
T  26444 cattgtgggacccaaatgggcggcagg-ctctccctaagagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttggttaagctaga 26346  T
Q  116 agagacc 122  Q
    |||||||    
T  26345 agagacc 26339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 2e-20; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 44 - 151
Target Start/End: Complemental strand, 25084120 - 25084013
Alignment:
Q  44 ctctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgc 143  Q
    ||||||| |||||||||||   |||||||||||||||||||||||| ||| |||||| ||| ||||||||||||||||   |||||||| ||||||| |     
T  25084120 ctctccctaagagttttaacattgctgcatgtccaagactgaattcgaactcaagactttgattaagctagaagagacttgtgtcatctcatctaagtgt 25084021  T
Q  144 tcttgggt 151  Q
    ||||||||    
T  25084020 tcttgggt 25084013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 18 - 148
Target Start/End: Complemental strand, 278502 - 278374
Alignment:
Q  18 ttgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaag 117  Q
    |||||| ||| |||||| ||||||| ||||||  ||||||||||||| || |||||| ||||  ||| |||||||| ||||||||| |||||||||||||    
T  278502 ttgtgggacctaaatggacggcaaa-ctctccataagagttttaatg-tgttgcatgcccaaagctggattcaaactcaagaccttagttaagctagaag 278405  T
Q  118 agaccgatgtcatctaatctaagcgctcttg 148  Q
    ||||   |||||||| |||||| ||||||||    
T  278404 agactcgtgtcatctcatctaaacgctcttg 278374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 16 - 153
Target Start/End: Complemental strand, 12411261 - 12411125
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    |||||||| ||  |||||||||||| | |||| || ||||||||||| ||||||||||| ||||| ||| |||| ||| || ||||||||||||| ||||    
T  12411261 cattgtgggacttaaatgggcggcaga-ctcttcctaagagttttaacgctgctgcatgcccaaggctggattcgaactcaggaccttggttaagttaga 12411163  T
Q  116 agagaccgatgtcatctaatctaagcgctcttgggtag 153  Q
    |||||||  |  ||||| |||||||| ||||| |||||    
T  12411162 agagacctgttccatctcatctaagcactcttaggtag 12411125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 52 - 148
Target Start/End: Complemental strand, 423733 - 423637
Alignment:
Q  52 aagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgctcttg 148  Q
    ||||||||||| ||||| ||||| ||||| ||| |||||||||||| ||||||||||| |||||||||| |  |  ||||| |||||||||||||||    
T  423733 aagagttttaacgctgcagcatgcccaaggctggattcaaacccaaaaccttggttaaactagaagagatctgttccatctcatctaagcgctcttg 423637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 152
Target Start/End: Complemental strand, 21910317 - 21910183
Alignment:
Q  17 attgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaa 116  Q
    ||||||| ||| ||||| |||||| | ||||| | ||||||||||| | || |||||| ||||| ||| |||| |||||| || ||||||||||||||||    
T  21910317 attgtgggacctaaatgagcggcaga-ctctctctaagagttttaacgatgttgcatgcccaaggctggattcgaacccaggatcttggttaagctagaa 21910219  T
Q  117 gagaccgatgtcatctaatctaagcgctcttgggta 152  Q
    |||||   | |||||| |||||| ||||||||||||    
T  21910218 gagacttgtttcatctcatctaaacgctcttgggta 21910183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 18 - 122
Target Start/End: Original strand, 21029009 - 21029116
Alignment:
Q  18 ttgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgt------ccaagactgaattcaaacccaagaccttggttaagc 111  Q
    |||||| ||||||||||||||||||   ||| | ||||||||||| |||||||||| |      ||||| ||| |||| |||||||||||||||||||||    
T  21029009 ttgtggcacccaaatgggcggcaaa---ctctctaagagttttaacgctgctgcatctgcatgcccaaggctggattcgaacccaagaccttggttaagc 21029105  T
Q  112 tagaagagacc 122  Q
    |||||||||||    
T  21029106 tagaagagacc 21029116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 44 - 149
Target Start/End: Original strand, 31107548 - 31107653
Alignment:
Q  44 ctctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgc 143  Q
    ||||||||||||||||||| |||| |||||||||||  ||| |||| ||| ||  ||||| |||||| ||||||||||| || |||||| |||||| |||    
T  31107548 ctctcccaaagagttttaacgctgttgcatgtccaatgctggattcgaactcagaaccttagttaagttagaagagacccatttcatctcatctaaacgc 31107647  T
Q  144 tcttgg 149  Q
    | ||||    
T  31107648 tattgg 31107653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 151
Target Start/End: Complemental strand, 5944942 - 5944821
Alignment:
Q  29 aaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtc 128  Q
    |||||||||||||| ||||||| || ||||||||   || | |||||| |||||||||||| ||| || ||||||||||||| || ||||||||  | ||    
T  5944942 aaatgggcggcaaa-ctctccctaaaagttttaacaatgttacatgtcaaagactgaattcgaactcaggaccttggttaagttaaaagagacccgtatc 5944844  T
Q  129 atctaatctaagcgctcttgggt 151  Q
    |||| || ||||| |||||||||    
T  5944843 atcttatataagcactcttgggt 5944821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 121
Target Start/End: Original strand, 15614639 - 15614705
Alignment:
Q  55 agttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagac 121  Q
    |||||||| | |||| ||||||||||||||||||| |||||| ||| ||||||||| ||||||||||    
T  15614639 agttttaacgttgctacatgtccaagactgaattcgaacccatgacattggttaagttagaagagac 15614705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 121
Target Start/End: Complemental strand, 28933251 - 28933147
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    |||||||||||||||||||||||| |||||||| | |||| |||||| | || |||||||| ||| |||||||||||  || ||| || |||||| || |    
T  28933251 cattgtggaacccaaatgggcggc-aaactctctctaagaattttaacgatgttgcatgtctaaggctgaattcaaaatcaggactttagttaagataaa 28933153  T
Q  116 agagac 121  Q
    ||||||    
T  28933152 agagac 28933147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 41 - 149
Target Start/End: Original strand, 26477751 - 26477859
Alignment:
Q  41 aaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaag 140  Q
    |||||||||| |||| |||||| | |||||||| ||| || ||| |||||||  ||||| ||||||||||||| || ||| |  |||||||| || ||||    
T  26477751 aaactctccctaagaattttaacgttgctgcatttccgaggctggattcaaattcaagatcttggttaagctaaaatagatccgtgtcatctcatttaag 26477850  T
Q  141 cgctcttgg 149  Q
    |||||||||    
T  26477851 cgctcttgg 26477859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 123
Target Start/End: Complemental strand, 28099356 - 28099250
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    |||| |||||| ||||||| || ||||  |||||| || ||||||||  |||||||||| ||||| ||| |||| |||||| |||||| |||||| ||||    
T  28099356 cattatggaactcaaatggacgacaaat-tctccctaaaagttttaacactgctgcatgcccaaggctggattcgaacccaggaccttagttaaggtaga 28099258  T
Q  116 agagaccg 123  Q
    ||||||||    
T  28099257 agagaccg 28099250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 16 - 151
Target Start/End: Complemental strand, 31412235 - 31412102
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctaga 115  Q
    |||||||||||||||||||||||| | |||||||| |||||||||||  |||||||| | ||||  ||||||||  | ||| |||||| ||||| |||      
T  31412235 cattgtggaacccaaatgggcggc-agactctccctaagagttttaacactgctgcacgcccaaagctgaattc-gatccatgaccttagttaaactatg 31412138  T
Q  116 agagaccgatgtcatctaatctaagcgctcttgggt 151  Q
    |||||||  |  ||||| ||||||| ||||||||||    
T  31412137 agagacccgttccatctcatctaagtgctcttgggt 31412102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 96
Target Start/End: Original strand, 12836925 - 12837004
Alignment:
Q  16 cattgtggaacccaaatgggcggcaaaactctcccaaagagttttaatgctgctgcatgtccaagactgaattcaaaccca 96  Q
    |||||||| ||||||||||||||| |  ||||||| ||||||||||| ||||||||||| | ||| ||| |||| ||||||    
T  12836925 cattgtgggacccaaatgggcggcgag-ctctccctaagagttttaacgctgctgcatgcctaaggctggattcgaaccca 12837004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 147
Target Start/End: Original strand, 7468603 - 7468698
Alignment:
Q  52 aagagttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgctctt 147  Q
    |||||||||| |||||||||||| |||| ||||  ||||||| || ||||||| ||||| |||| |||| | ||  ||||| |||||| |||||||    
T  7468603 aagagttttactgctgctgcatgcccaaaactggtttcaaactcaggaccttgattaaggtagaggagatcaataacatctcatctaaacgctctt 7468698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 82 - 148
Target Start/End: Original strand, 8507136 - 8507202
Alignment:
Q  82 ctgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgctcttg 148  Q
    |||||||| ||||||| |||||  ||||||||||||| | || |||||||| |||||| ||||||||    
T  8507136 ctgaattcgaacccaaaaccttaattaagctagaagaaatcggtgtcatctcatctaaacgctcttg 8507202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 148
Target Start/End: Original strand, 17457132 - 17457225
Alignment:
Q  55 agttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgctcttg 148  Q
    |||||||| | || |||||| | |||||||||||||||| ||  || ||||||||| || |||||| |  |||||||| |||||||| ||||||    
T  17457132 agttttaacgttgatgcatgccgaagactgaattcaaactcataactttggttaagttaaaagagatctgtgtcatctcatctaagcactcttg 17457225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0020 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 151
Target Start/End: Complemental strand, 167919 - 167834
Alignment:
Q  64 gctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagaccgatgtcatctaatctaagcgctcttgggt 151  Q
    ||||||||||| ||||| ||| |||  |||||  ||||||| |||||||||||||||||  | |||||| ||||||||||||||||||    
T  167919 gctgctgcatgcccaaggctggatttgaaccc--gaccttgattaagctagaagagacccgtttcatctcatctaagcgctcttgggt 167834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 32330 - 32397
Alignment:
Q  55 agttttaatgctgctgcatgtccaagactgaattcaaacccaagaccttggttaagctagaagagacc 122  Q
    |||||||| ||||||||||  |||||| || |||| ||||||  |||||||| |||||||||||||||    
T  32330 agttttaacgctgctgcatacccaagattggattcgaacccagaaccttggtgaagctagaagagacc 32397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University