View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14924_high_18 (Length: 292)
Name: NF14924_high_18
Description: NF14924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14924_high_18 |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 276
Target Start/End: Complemental strand, 6011245 - 6010967
Alignment:
| Q |
1 |
caaaagctacagtttaagcttcaacaaaattacga---tatcaccatgatttcatcaaacttacagccaatctaaacatgcactcagccttttatcacct |
97 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
6011245 |
caaaagctacagtttaagcttcaacaaaattacgacgatatcaccatgatttcatctaacttaccgccaatctaaacatgcactcagccttttatcacct |
6011146 |
T |
|
| Q |
98 |
tctaactatggttaaaccacgataataaaaatggaaaaattaatcaactaggaaataccaattacccttaaaattatgataataacaattgaacaattaa |
197 |
Q |
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||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6011145 |
tctaactgaggttaaaccatgataataaaaatggaaaaattaatcaactaggaaataccaattacccttaaaattatgataataacaattgaacaattaa |
6011046 |
T |
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| Q |
198 |
tcaatcagaaaacaccaattaaccacaaaactaatgccagaagaagactatactaaccttctaagaataccaacaatat |
276 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6011045 |
tcaatcagaaaacaccaattaaccacaaaactaatgccagaagaagactatactaaccttctaagaataccaacaatat |
6010967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 11140328 - 11140289
Alignment:
| Q |
17 |
agcttcaacaaaattacgatatcaccatgatttcatcaaa |
56 |
Q |
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| T |
11140328 |
agcttcaacaaaattacgatgtcaccatgatttcgtcaaa |
11140289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 6632945 - 6632994
Alignment:
| Q |
1 |
caaaagctacagtttaa-gcttcaacaaaattacgatatcaccatgattt |
49 |
Q |
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||||||||||| ||||| | ||||||||||| |||||||||||||||||| |
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| T |
6632945 |
caaaagctacactttaaagattcaacaaaatcacgatatcaccatgattt |
6632994 |
T |
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