View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14924_high_2 (Length: 571)
Name: NF14924_high_2
Description: NF14924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14924_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 11 - 273
Target Start/End: Complemental strand, 552603 - 552325
Alignment:
| Q |
11 |
attattctgcaaatttaattcttgattgtctctttcatttctgcagatacttgagaaaatattctctgctaattactcatatccatcggggtttaaatct |
110 |
Q |
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| T |
552603 |
attattctgcaaatttaattcttgattgtctctttcatttctgcagatacttgagaaaatattctctgctaattactcatatccatcggggtttaaatct |
552504 |
T |
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| Q |
111 |
tatttcctgagttgtatttgaagatagattgcatgcttgaaatatgcaagtcttcattgtgttgaaagttccatgaaatattggcatctttctgcac--g |
208 |
Q |
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| T |
552503 |
tatttcctgagttgtatttgaagatagattgcatgcttgaaatatgcaagtcttcattgtgttgaaagttccatgaaatattggcatctttctgcacgtg |
552404 |
T |
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| Q |
209 |
ccaacatattatgtctctggttta--------------tgttatgttaagattatgatttgattcgctctttgttcaac |
273 |
Q |
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| T |
552403 |
ccaacatattatgtctctggtttatgaaggattgtaattgttatgttaagattatgatttgattcgctctttgttcaac |
552325 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 350 - 552
Target Start/End: Complemental strand, 552263 - 552061
Alignment:
| Q |
350 |
gctgaattggtgtcattgttaatgcatttttgttggattactacaaagtatggaaaatgagggatttgagtaaaaaatggctcatgataaatttgagact |
449 |
Q |
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| T |
552263 |
gctgaattggtgtcattgttaatgcatttttgttggattactacaaagtatggaaaatgagggatttgagtaaaaaatggctcatgataaatttgagact |
552164 |
T |
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| Q |
450 |
tggtaatatgttagaattgatgttttggtttcaaaccaatgctgagttttgggggtatttgtatgattgtcactttttatggacagcttgttgttgggac |
549 |
Q |
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| T |
552163 |
tggtaatatgttagaattgatgttttggtttcaaaccaatgctgagttttgggggtatttgtatgattgtcactttttatggacagcttgttgttgggac |
552064 |
T |
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| Q |
550 |
tgc |
552 |
Q |
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| T |
552063 |
tgc |
552061 |
T |
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