View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14924_high_30 (Length: 243)
Name: NF14924_high_30
Description: NF14924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14924_high_30 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 15 - 227
Target Start/End: Original strand, 6752955 - 6753168
Alignment:
| Q |
15 |
cagagaacatccaaacatgtcagtttaacatctcctatcaaactaaaaattcaacaatttggttggtaaataatatcaacaacaaaatctcctatcaaag |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6752955 |
cagagaacatccaaacatgtcagtttaacatctcctatcaaactaaaaattcaacaatttggttggtaaataatatcaacaacaaaatctcctatcaaag |
6753054 |
T |
|
| Q |
115 |
catggttggtaac--tttgctgtgacaagttgagtcctaactcaatgnnnnnnncatgtttgtaatatatgaatcttacccttcattttcatgtttataa |
212 |
Q |
| |
|
||||||||||||| | ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6753055 |
catggttggtaacctctcgctgtgacaag-tgagtcctaactcaatgtttttttcatgtttgtaatatatgaatcttacccttcattttcatgtttataa |
6753153 |
T |
|
| Q |
213 |
cagtagcaatttctg |
227 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
6753154 |
cagtagcaatttctg |
6753168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University