View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14924_high_5 (Length: 500)
Name: NF14924_high_5
Description: NF14924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14924_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 236; Significance: 1e-130; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 230 - 481
Target Start/End: Original strand, 1630130 - 1630381
Alignment:
| Q |
230 |
taactaaccagctgttgcagagctataagtggtaaaacctccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccagcata |
329 |
Q |
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||||| ||| |||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1630130 |
taactcacctgctgttgcagagctataagtggtataaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccagcata |
1630229 |
T |
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| Q |
330 |
atattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcat |
429 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1630230 |
atattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcat |
1630329 |
T |
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| Q |
430 |
ttaaagcagcttgcacagtcttgtactgtccagaaccatcttttgccaccac |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1630330 |
ttaaagcagcttgcacagtcttgtactgtccagaaccatcttttgccaccac |
1630381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 240 - 481
Target Start/End: Original strand, 1607144 - 1607385
Alignment:
| Q |
240 |
gctgttgcagagctataagtggtaaaacctccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccagcataatattgtcat |
339 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1607144 |
gctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccagcataatattgtcat |
1607243 |
T |
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| Q |
340 |
tatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaagcagc |
439 |
Q |
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| T |
1607244 |
tatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaagcagc |
1607343 |
T |
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| Q |
440 |
ttgcacagtcttgtactgtccagaaccatcttttgccaccac |
481 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
1607344 |
ctgcacagtcttgtactgtccagaaccatcttttgccaccac |
1607385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 240 - 481
Target Start/End: Original strand, 1624165 - 1624406
Alignment:
| Q |
240 |
gctgttgcagagctataagtggtaaaacctccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccagcataatattgtcat |
339 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1624165 |
gctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccagcataatattgtcat |
1624264 |
T |
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| Q |
340 |
tatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaagcagc |
439 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1624265 |
tatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaagcagc |
1624364 |
T |
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| Q |
440 |
ttgcacagtcttgtactgtccagaaccatcttttgccaccac |
481 |
Q |
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| T |
1624365 |
ttgcacagtcttgtactgaccagaaccatcttttgccaccac |
1624406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 230 - 481
Target Start/End: Complemental strand, 10820149 - 10819898
Alignment:
| Q |
230 |
taactaaccagctgttgcagagctataagtggtaaaacctccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccagcata |
329 |
Q |
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|
||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||| |||| |||| |
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| T |
10820149 |
taactcaccggctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttatgatggtattttgcattccatcaccgaccaacata |
10820050 |
T |
|
| Q |
330 |
atattgtcattatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcat |
429 |
Q |
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|| || |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||||| |
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| T |
10820049 |
atgttatcattatgaacagcaacctcaatgttctctttataaacacctttcttcacatgtatcacataccttgtcttgtattttctcttagcagcagcat |
10819950 |
T |
|
| Q |
430 |
ttaaagcagcttgcacagtcttgtactgtccagaaccatcttttgccaccac |
481 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10819949 |
ttaaagcagcttgcacagtcttgtactgtccagaaccatcttttgccaccac |
10819898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 16 - 113
Target Start/End: Complemental strand, 10820754 - 10820656
Alignment:
| Q |
16 |
atgaagtgaagtccatcaatacctaaatttaaatgatccaagcgtaattatttaaaaa-atgaaattaattgtatgtaagaaagtcacaagtataattt |
113 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||||||| ||||||||| ||||| |||||||| |
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| T |
10820754 |
atgaagtgaagtccatcaatacctaaatttaaatgatccaagagtaattatttaaaaatatgaaagtaattgtaggtaagaaagccacaattataattt |
10820656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 16 - 113
Target Start/End: Original strand, 1629944 - 1630050
Alignment:
| Q |
16 |
atgaagtgaagtccatcaatacctaaatttaaatgatccaagcgtaattatt-----taaaaaatgaaattaattgt----atgtaagaaagtcacaagt |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||| ||||||| ||||||||||| | ||||| |
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| T |
1629944 |
atgaagtgaagtccatcaatacctaaatttaaatgatccaagagtaattatttaaaataaaaaatgaaagtaattgtatgcatgtaagaaagcctcaagt |
1630043 |
T |
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| Q |
107 |
ataattt |
113 |
Q |
| |
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||||||| |
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| T |
1630044 |
ataattt |
1630050 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Original strand, 1606646 - 1606687
Alignment:
| Q |
16 |
atgaagtgaagtccatcaatacctaaatttaaatgatccaag |
57 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
1606646 |
atgaagtgaagtccatcaatacctaaatttaaatgatccaag |
1606687 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 206; Significance: 1e-112; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 240 - 481
Target Start/End: Original strand, 18785191 - 18785432
Alignment:
| Q |
240 |
gctgttgcagagctataagtggtaaaacctccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccagcataatattgtcat |
339 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| || |||| |
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| T |
18785191 |
gctgttgcagagctataagtggtaaaaccaccttgaacacttctagaacttgttattatggtattttgcatcccatcaccaaccaacataatgttatcat |
18785290 |
T |
|
| Q |
340 |
tatgaacagcaacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaagcagc |
439 |
Q |
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| ||||| |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
18785291 |
tgtgaaccgcaacctcaatgttctctttataaacacctttcttcacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttagagcagc |
18785390 |
T |
|
| Q |
440 |
ttgcacagtcttgtactgtccagaaccatcttttgccaccac |
481 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
18785391 |
ttgcacagtcttgtactgtccagaaccatcttttgccaccac |
18785432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 349 - 442
Target Start/End: Original strand, 12803497 - 12803590
Alignment:
| Q |
349 |
caacctcaatgttctctctataaacacctttcttaacatgtatcacaaaccttgtcttatattttctcttagcagcagcatttaaagcagcttg |
442 |
Q |
| |
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||||| |||| ||||||||||||||||||||||| ||| |||| ||||| ||||| ||| | ||||| | |||||||||||| |||| |||| |
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| T |
12803497 |
caaccacaatattctctctataaacacctttcttcacacgtataacaaatcttgttttaaaccttctcctcccagcagcatttatagcatcttg |
12803590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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