View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14924_low_10 (Length: 408)
Name: NF14924_low_10
Description: NF14924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14924_low_10 |
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| [»] scaffold0005 (1 HSPs) |
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Alignment Details
Target: scaffold0005 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: scaffold0005
Description:
Target: scaffold0005; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 400
Target Start/End: Original strand, 232289 - 232671
Alignment:
| Q |
18 |
ttcctgacgtgcaatatatctgttaattgatgtggttcttaattgtcagttaacaatagttaggtacaaagttcatggtcaggtgatggatgctaccgga |
117 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
232289 |
ttcctaacgtgcaatatatctgttaattgatgtggttcttaattgtcagtcaacaatagttaggtacaaagtccatgttcaggtgatggatgctaccgga |
232388 |
T |
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| Q |
118 |
tcaacaactttcattttgtttgatcgtaatgtccaaacttatgttggcaggagtgtatatgatctgattgatgcacccagtcaggtgatacttaatgtcc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
232389 |
tcaacaactttcattttgtttgatcgtaatgtccaaacttatgttggcaggagtgtacatgatctgattgatgcacccagtcaggtgatactaaatgtcc |
232488 |
T |
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| Q |
218 |
acactatgtagcacctaatttgatgccattgttgatttctgcaaactagcgacaattgtgattatccatcagatctnnnnnnnnttgttggaaagcaaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||| ||||| ||||||||||| |||| |
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| T |
232489 |
acactatgtagcacctaatttgatgccattgttgatttatgcagactagcgacaattgtggttatccatctgatctagaaatttttgttggaaagaaaat |
232588 |
T |
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| Q |
318 |
gttgtttaaggttgaaattacggatgggaacttgatgcagagcttggcgcaattattctgtcaaaaggaccactgatgatgtc |
400 |
Q |
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| T |
232589 |
gttgtttaaggttgaaattacggatgggaacttgatgcagagcttggcgcaattattctgtcaaaaggaccactaatgatgtc |
232671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 18 - 400
Target Start/End: Complemental strand, 14585086 - 14584704
Alignment:
| Q |
18 |
ttcctgacgtgcaatatatctgttaattgatgtggttcttaattgtcagttaacaatagttaggtacaaagttcatggtcaggtgatggatgctaccgga |
117 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
14585086 |
ttcctaacgtgcaatatatctgttaattgatgtggttcttaattgtcagtcaacaatagttaggtacaaagtccatgttcaggtgatggatgctaccgga |
14584987 |
T |
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| Q |
118 |
tcaacaactttcattttgtttgatcgtaatgtccaaacttatgttggcaggagtgtatatgatctgattgatgcacccagtcaggtgatacttaatgtcc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |
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| T |
14584986 |
tcaacaactttcattttgtttgatcgtaatgtccaaacttatgttggcaggagtgtacatgatctgattgatgcacccagtcaggtgatactaaatgtcc |
14584887 |
T |
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| Q |
218 |
acactatgtagcacctaatttgatgccattgttgatttctgcaaactagcgacaattgtgattatccatcagatctnnnnnnnnttgttggaaagcaaat |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||| ||||| ||||||||||| |||| |
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| T |
14584886 |
acactatgtagcacctaatttgatgccattgttgatttatgcagactagcgacaattgtggttatccatctgatctagaaatttttgttggaaagaaaat |
14584787 |
T |
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| Q |
318 |
gttgtttaaggttgaaattacggatgggaacttgatgcagagcttggcgcaattattctgtcaaaaggaccactgatgatgtc |
400 |
Q |
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| T |
14584786 |
gttgtttaaggttgaaattacggatgggaacttgatgcagagcttggcgcaattattctgtcaaaaggaccactaatgatgtc |
14584704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 302 - 396
Target Start/End: Complemental strand, 49825356 - 49825263
Alignment:
| Q |
302 |
ttgttggaaagcaaatgttgtttaaggttgaaattacggatgggaacttgatgcagagcttggcgcaattattctgtcaaaaggaccactgatga |
396 |
Q |
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|||||||||| |||||| | ||||||||||||||||||||||||||||| ||||| | ||||||||| ||| ||||||||||||| ||||||| |
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| T |
49825356 |
ttgttggaaaacaaatgctatttaaggttgaaattacggatgggaacttaatgcata-attggcgcaactatgctgtcaaaaggacatctgatga |
49825263 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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