View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14924_low_11 (Length: 407)

Name: NF14924_low_11
Description: NF14924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14924_low_11
NF14924_low_11
[»] chr6 (18 HSPs)
chr6 (17-302)||(4587135-4587420)
chr6 (17-142)||(4558628-4558755)
chr6 (19-129)||(4612229-4612341)
chr6 (17-141)||(4572469-4572594)
chr6 (140-207)||(4558861-4558928)
chr6 (162-206)||(4572758-4572802)
chr6 (17-65)||(4258753-4258801)
chr6 (17-65)||(4627653-4627701)
chr6 (17-72)||(3173506-3173561)
chr6 (17-72)||(4507414-4507469)
chr6 (21-72)||(4513549-4513600)
chr6 (17-72)||(4618804-4618859)
chr6 (23-65)||(4255398-4255440)
chr6 (17-65)||(4265634-4265682)
chr6 (17-65)||(4488774-4488822)
chr6 (17-65)||(4575958-4576006)
chr6 (21-65)||(4603617-4603661)
chr6 (17-65)||(4623810-4623858)
[»] scaffold0475 (1 HSPs)
scaffold0475 (19-72)||(2329-2382)
[»] chr3 (1 HSPs)
chr3 (17-73)||(1282936-1282992)
[»] scaffold0199 (1 HSPs)
scaffold0199 (17-65)||(1261-1309)
[»] chr8 (1 HSPs)
chr8 (17-65)||(1676024-1676072)
[»] scaffold0288 (1 HSPs)
scaffold0288 (17-72)||(2021-2076)


Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-109; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 17 - 302
Target Start/End: Original strand, 4587135 - 4587420
Alignment:
Q  17 acaatggattgatatggccttgaactggagatgggattaacacagcatgaggttttgaatcactcatttctgagtttttgtttgaatgttgagcaaaggg 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  4587135 acaatggattgatatggccttgaactggagatgggattaacacagcatgaggttttgaatcactcatttctgagtttgtgtttgaattttgagcaaaggg 4587234  T
Q  117 aagccaatggtttaatagagataaagtgaccacattttgttataaaaggaaaacaaattttcattaaaaagtttatagcacaaacttaagcctatatttg 216  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||||  | ||||||    
T  4587235 aagccaatggtttaatagagataaagtgaccactttttgttataaaaggaaatcaatttttcattaaaaagtttatagcacaaacttaagtatgtatttg 4587334  T
Q  217 tactgcggtgacgagaattgatttggatg--tttgtttaacaaaattactttgtagttgaaagtgcgttgaatgtgatttatatttat 302  Q
    |  |||||||||||||||||||||| |||  ||||||||||||||||| | | | ||| ||||||||||||||||||| |||||||||    
T  4587335 t-ttgcggtgacgagaattgatttgaatgaatttgtttaacaaaattagtgtttggtt-aaagtgcgttgaatgtgatatatatttat 4587420  T

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Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 4558628 - 4558755
Alignment:
Q  17 acaatggattgatatggccttgaactggagatgggattaacacagcatgaggttttgaatcactcatttctgagtttt--tgtttgaatgttgagcaaag 114  Q
    ||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||  ||||||||||| ||||||||  |||||||||||||||| |||    
T  4558628 acaatggattgatatggccttgaactggatatggaattaacacagcatgtggttttttatcactcatttttgagtttttgtgtttgaatgttgagctaag 4558727  T
Q  115 ggaagccaatggtttaatagagataaag 142  Q
    ||||||||||||||||||| ||||||||    
T  4558728 ggaagccaatggtttaataaagataaag 4558755  T

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Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 4612341 - 4612229
Alignment:
Q  19 aatggattgatatggccttgaactggagatgggattaacacagcatgaggttttgaatcactcatttctgagtttttgtttgaatgttgagcaaaggg-- 116  Q
    ||||||||||||||||||||||||||| |||| |||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||| | | ||||      
T  4612341 aatggattgatatggccttgaactggatatggaattaacactgcatgtggttttgaatcactcatttctgagtttgtgtttgaatgttgtgtacagggat 4612242  T
Q  117 aagccaatggttt 129  Q
    |||||||||||||    
T  4612241 aagccaatggttt 4612229  T

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Target: chr6; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 17 - 141
Target Start/End: Original strand, 4572469 - 4572594
Alignment:
Q  17 acaatggattgatatggccttgaactggagatgggattaacacagcatgaggttttgaatcactcatttctgagtttt--tgtttgaatgttgagcaaag 114  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||  ||||||||||  ||||||||  |||||||||||||||| ||     
T  4572469 acaatggattgatatggccttgaactggatatgggattaacacagcatgtggttttttatcactcattattgagtttttgtgtttgaatgttgagctaa- 4572567  T
Q  115 ggaagccaatggtttaatagagataaa 141  Q
    |||| |||||| ||||||| |||||||    
T  4572568 ggaaaccaatgttttaataaagataaa 4572594  T

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Target: chr6; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 140 - 207
Target Start/End: Original strand, 4558861 - 4558928
Alignment:
Q  140 aagtgaccacattttgttataaaaggaaaacaaattttcattaaaaagtttatagcacaaacttaagc 207  Q
    |||| ||||| |||||||||| ||||||||||| ||||||||||||||||||| | ||||||||||||    
T  4558861 aagtcaccactttttgttatagaaggaaaacaatttttcattaaaaagtttattgaacaaacttaagc 4558928  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 162 - 206
Target Start/End: Original strand, 4572758 - 4572802
Alignment:
Q  162 aaggaaaacaaattttcattaaaaagtttatagcacaaacttaag 206  Q
    ||||||||||| |||||||||||||||||||||||||||||||||    
T  4572758 aaggaaaacaatttttcattaaaaagtttatagcacaaacttaag 4572802  T

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Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 4258801 - 4258753
Alignment:
Q  17 acaatggattgatatggccttgaactggagatgggattaacacagcatg 65  Q
    ||||||||||||||||||||||| ||||| |||| || |||||||||||    
T  4258801 acaatggattgatatggccttgagctggatatggaatcaacacagcatg 4258753  T

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Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 4627653 - 4627701
Alignment:
Q  17 acaatggattgatatggccttgaactggagatgggattaacacagcatg 65  Q
    |||||||||||||||||||||||| |||| |||| || |||||||||||    
T  4627653 acaatggattgatatggccttgaagtggaaatggaatcaacacagcatg 4627701  T

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Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 3173506 - 3173561
Alignment:
Q  17 acaatggattgatatggccttgaactggagatgggattaacacagcatgaggtttt 72  Q
    |||||| |||||||||||||||||||||| ||||  ||||||| ||||| ||||||    
T  3173506 acaatgcattgatatggccttgaactggatatggagttaacactgcatgtggtttt 3173561  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 4507414 - 4507469
Alignment:
Q  17 acaatggattgatatggccttgaactggagatgggattaacacagcatgaggtttt 72  Q
    |||||||||||||||||||||||  |||| |||| || ||||||||||| ||||||    
T  4507414 acaatggattgatatggccttgagttggatatggaatcaacacagcatgtggtttt 4507469  T

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Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 21 - 72
Target Start/End: Complemental strand, 4513600 - 4513549
Alignment:
Q  21 tggattgatatggccttgaactggagatgggattaacacagcatgaggtttt 72  Q
    |||||||||||||||||||| |||| |||| || ||||||||||| ||||||    
T  4513600 tggattgatatggccttgaagtggatatggaatcaacacagcatgtggtttt 4513549  T

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Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 72
Target Start/End: Original strand, 4618804 - 4618859
Alignment:
Q  17 acaatggattgatatggccttgaactggagatgggattaacacagcatgaggtttt 72  Q
    ||||||||||||||||||||||||||||| |||| || | |||| |||| ||||||    
T  4618804 acaatggattgatatggccttgaactggatatggaatcatcacaacatgtggtttt 4618859  T

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Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 23 - 65
Target Start/End: Complemental strand, 4255440 - 4255398
Alignment:
Q  23 gattgatatggccttgaactggagatgggattaacacagcatg 65  Q
    ||||||||||||||||||||||| |||| || |||||||||||    
T  4255440 gattgatatggccttgaactggatatggaatcaacacagcatg 4255398  T

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Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 4265682 - 4265634
Alignment:
Q  17 acaatggattgatatggccttgaactggagatgggattaacacagcatg 65  Q
    |||||| ||||||||||||||||| ||||| ||| || |||||||||||    
T  4265682 acaatgcattgatatggccttgaaatggagctggaatcaacacagcatg 4265634  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Complemental strand, 4488822 - 4488774
Alignment:
Q  17 acaatggattgatatggccttgaactggagatgggattaacacagcatg 65  Q
    |||||| |||||||||||||||||||||| ||||  ||||||| |||||    
T  4488822 acaatgcattgatatggccttgaactggaaatggtgttaacactgcatg 4488774  T

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Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 4575958 - 4576006
Alignment:
Q  17 acaatggattgatatggccttgaactggagatgggattaacacagcatg 65  Q
    |||||| |||||||||||||||||||||| ||||  ||||||| |||||    
T  4575958 acaatgcattgatatggccttgaactggaaatggagttaacactgcatg 4576006  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 21 - 65
Target Start/End: Original strand, 4603617 - 4603661
Alignment:
Q  21 tggattgatatggccttgaactggagatgggattaacacagcatg 65  Q
    |||||||||||||||||||| |||| |||| || |||||||||||    
T  4603617 tggattgatatggccttgaagtggatatggaatcaacacagcatg 4603661  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 4623810 - 4623858
Alignment:
Q  17 acaatggattgatatggccttgaactggagatgggattaacacagcatg 65  Q
    |||||||||||||||| |||||||||||| |||  || |||||||||||    
T  4623810 acaatggattgatatgaccttgaactggatatgcaatcaacacagcatg 4623858  T

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Target: scaffold0475 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0475
Description:

Target: scaffold0475; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 72
Target Start/End: Original strand, 2329 - 2382
Alignment:
Q  19 aatggattgatatggccttgaactggagatgggattaacacagcatgaggtttt 72  Q
    ||||||||||||||||||||||||||| |||| || ||||||||||| ||||||    
T  2329 aatggattgatatggccttgaactggatatggaatcaacacagcatgtggtttt 2382  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 1282936 - 1282992
Alignment:
Q  17 acaatggattgatatggccttgaactggagatgggattaacacagcatgaggttttg 73  Q
    ||||||||||||||||||||||| ||||| |||| || ||||||||||| |||||||    
T  1282936 acaatggattgatatggccttgagctggatatggaatcaacacagcatgtggttttg 1282992  T

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Target: scaffold0199 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 1261 - 1309
Alignment:
Q  17 acaatggattgatatggccttgaactggagatgggattaacacagcatg 65  Q
    ||||||||||||||||||||||| ||||| |||| || |||||||||||    
T  1261 acaatggattgatatggccttgagctggatatggaatgaacacagcatg 1309  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 1676024 - 1676072
Alignment:
Q  17 acaatggattgatatggccttgaactggagatgggattaacacagcatg 65  Q
    ||||||||||||||||||||||| ||||| |||| || |||||||||||    
T  1676024 acaatggattgatatggccttgagctggatatggaatgaacacagcatg 1676072  T

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Target: scaffold0288 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 17 - 72
Target Start/End: Complemental strand, 2076 - 2021
Alignment:
Q  17 acaatggattgatatggccttgaactggagatgggattaacacagcatgaggtttt 72  Q
    ||||||||||||||||||||||||||||| |||| || | |||| |||| ||||||    
T  2076 acaatggattgatatggccttgaactggatatggaatcatcacaacatgtggtttt 2021  T

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