View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14924_low_12 (Length: 406)
Name: NF14924_low_12
Description: NF14924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14924_low_12 |
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Alignment Details
Target: chr8 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 20 - 396
Target Start/End: Complemental strand, 3425590 - 3425214
Alignment:
| Q |
20 |
accaggctctcataagtcataccatatttgtcttatagggcacaagagtgtgtatgatagctattgtagatacgctatacaagattctagctatgacagt |
119 |
Q |
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| T |
3425590 |
accaggctctcataagtcataccatatttgtcttataggacacaagagtgtgtatgatagctattgtagatacgctatacaagattctagctatgacagt |
3425491 |
T |
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| Q |
120 |
taattatggataactaacaagataacttgctacacaagttatctctgtgaatgacactaacttccttattttcatggtcaatacaaggcaacaatgacag |
219 |
Q |
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| T |
3425490 |
taattatggataactaacaagataacttgctacacaagttatctctgtgaatgacactaacttccttattttcatggtcaatacaaggcaacaatgacag |
3425391 |
T |
|
| Q |
220 |
aactcaaactcaaagatacggtaacaggatttttgagaatttttccctaaaattgcaatagcagacatcaaatcacaacggtaccgggatagcaccagcg |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3425390 |
aactcaaactcaaagatacggtaacaggatttttgagaatttttccctaaaattgcaatagcagatatcaaatcacaacggtaccgggatagcaccagcg |
3425291 |
T |
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| Q |
320 |
ccgcaatggcgctgctttttaaccactaatataggccgctagtgatgatactctcaatggcgcttttcgggcctatg |
396 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3425290 |
ccgcaatggcgctgctttttaaccactaatataggccgctagtgatgatactctcaatggcgcttttcgggcctatg |
3425214 |
T |
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