View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14924_low_14 (Length: 368)
Name: NF14924_low_14
Description: NF14924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14924_low_14 |
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| [»] chr7 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 368
Target Start/End: Original strand, 30958035 - 30958385
Alignment:
| Q |
17 |
aaaaatgtatgaaaaagaaacgaagacaatagtaatatcttttagaaatgataaaaactcataccagtttcataaatttcagcataaaagcttgtaaaat |
116 |
Q |
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| T |
30958035 |
aaaaatgtatgaaaaagaaacgaagacaatagtaatatcttttagaaatgataaaa-ctcataccagtttcataaatttcagcataaaagcttgtaaaat |
30958133 |
T |
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| Q |
117 |
gacatgctaagaactgataaaagaaaactagaaatggatgtgtataacgtaccgaaacatttttctcattcgaactcatcttatcgtcttcaaactttcc |
216 |
Q |
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| T |
30958134 |
gacatgctaagaactgataaaagaaaactagaaatggatgtgtataacgtaccgaaacatttttctcattcgaactcatcttatcgtcttcaaactttcc |
30958233 |
T |
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| Q |
217 |
ctgcggaatttgaacagccattgaatcaaagcttaaaagatgaaacagaagtagtggttctggaacttcaaggataacaaaagtttaaatccctatgaac |
316 |
Q |
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| T |
30958234 |
ctgcggaatttgaacagccatcgaatcaaagcttaaaagatgaaacagaagtagtggttctggaacttcaaggataacaaaagtttaaatccctatgaac |
30958333 |
T |
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| Q |
317 |
aagcaatatccattattgggaaaaccttggctccatttgccgaggataactt |
368 |
Q |
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| T |
30958334 |
aagcaatatccattattgggaaaaccttggctccatttgccgaggataactt |
30958385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 302 - 347
Target Start/End: Complemental strand, 11690117 - 11690072
Alignment:
| Q |
302 |
taaatccctatgaacaagcaatatccattattgggaaaaccttggc |
347 |
Q |
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| T |
11690117 |
taaatccctatgaacaagcaatatcaattattgggaaaaccatggc |
11690072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 303 - 368
Target Start/End: Original strand, 7473060 - 7473125
Alignment:
| Q |
303 |
aaatccctatgaacaagcaatatccattattgggaaaaccttggctccatttgccgaggataactt |
368 |
Q |
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| T |
7473060 |
aaatccatatgaacaagcaatatccatcattgggaaaaccttggccgcatttgatgaggataactt |
7473125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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