View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14924_low_15 (Length: 360)
Name: NF14924_low_15
Description: NF14924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14924_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 31 - 350
Target Start/End: Complemental strand, 46471563 - 46471243
Alignment:
| Q |
31 |
gaatctccctctcatcttgtaatactgtattttcagcaacctataacataaaataaggttaatgcggaaatatgtattctgagtgcatatccctatcaca |
130 |
Q |
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| T |
46471563 |
gaatctccctctcatcttgtaatactgtatttacagcaacctataacataaaataaggttaatgcggaaatatgtattctgagtgcatatccctatcaca |
46471464 |
T |
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| Q |
131 |
tttatgtttcttgatgatggctaatttcggcatcataccaatactaaaactatagatattaatctaatagaatgacatttacaatatgagtttgtcccaa |
230 |
Q |
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| T |
46471463 |
tttatgtttcttgatgatggccaatttcggcatcataccaatactaaaactatagatattaatctaatagaatgacatttacaatatgagtttgtcccaa |
46471364 |
T |
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| Q |
231 |
ttctaatcaggaaaccgagtataacccaaggttctaagcaggaaactccaaaaattacagt-gagtaatgagtatagctctaatatgtgaaccggtcatt |
329 |
Q |
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| T |
46471363 |
ttctaatcaggaaaccgagtataacccaaggttctaagcaggaaactccaaaaattacagtagagtaatgagtatagctctaatctgtgaaccggtcatt |
46471264 |
T |
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| Q |
330 |
tttggatgaattgcatctctg |
350 |
Q |
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| T |
46471263 |
tttggatgaattgcatctctg |
46471243 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 84
Target Start/End: Complemental strand, 1475233 - 1475170
Alignment:
| Q |
21 |
atgtggcctagaatctccctctcatcttgtaatactgtattttcagcaacctataacataaaat |
84 |
Q |
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| T |
1475233 |
atgtggcccagaaactccctctcgtcttgcaatactgtatttacagcaacctataacatgaaat |
1475170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 350
Target Start/End: Complemental strand, 1474954 - 1474869
Alignment:
| Q |
264 |
ctaagcaggaaactccaaaaattacagtgagtaatgagtatagctctaatatgtgaaccggtcatttttggatgaattgcatctctg |
350 |
Q |
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| T |
1474954 |
ctaagcaggaaactacaaaaatta-agcaagcaatgagtgtagctctaatctgtgactcaatcatttttggatgaattgcatgtctg |
1474869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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