View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14924_low_16 (Length: 352)
Name: NF14924_low_16
Description: NF14924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14924_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 334; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 43418247 - 43418588
Alignment:
| Q |
1 |
tttatgtgttattcttcttttctggcactggcagcatcaattcttctactcataatcatcatcttcagaaagtatccactgattttattgaaagcagcta |
100 |
Q |
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| T |
43418247 |
tttatgtgttattcttcttttctggcactggcagcatcaattcttctactcataatcatcatcttcagaaagtatccactgattttattgaaagcagcta |
43418346 |
T |
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| Q |
101 |
tctatcattgccaactaaacccaacttttgttgtgtccatcaaaattttatccaaatgcattgatccttgtttgcaaacctggaaaacgaaatgaccaaa |
200 |
Q |
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| T |
43418347 |
tctatcattgcccactaaacccaacttttgttgtgtccatcaaaattttatccaaatgcattgatccttgtttgcaaacctggaaaacgaaatgaccaaa |
43418446 |
T |
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| Q |
201 |
taataataattggggcaccagcatagacatgatgattgatgatacaaacaacactccaaaccaacaaaagtaacattcagtgaaccttttgattgaggat |
300 |
Q |
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| T |
43418447 |
taataataattggggcaccagcatagacatgatgattgatgatacaaacaacactccaaaccaacaaaagtaacattcagtgaaccttttgattgaggat |
43418546 |
T |
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| Q |
301 |
atatccgattactgttacatcctttttgtgtctctgtctgtg |
342 |
Q |
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| T |
43418547 |
atatccgattactgttacatcctttttgcgtctctgtctgtg |
43418588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 43406365 - 43406519
Alignment:
| Q |
1 |
tttatgtgttattcttcttttctggcactggcagcatcaattcttctactcataatcatcatcttcagaaagtatccactgattttattgaaagcagcta |
100 |
Q |
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|||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||||||| | || ||||||||||||||||||||||||||| |
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| T |
43406365 |
tttatgtgttattcttcttttcgggcattggcagcatcaattcttctactcat---catcatcttcacatagaatccactgattttattgaaagcagcta |
43406461 |
T |
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| Q |
101 |
tctatcattgccaactaaacccaacttttgttgtgtccatcaaaattttatccaaatg |
158 |
Q |
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| T |
43406462 |
gctatgattgcccactaatcccaacttttgttatggccgccaaaattttatctaaatg |
43406519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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