View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14924_low_18 (Length: 326)

Name: NF14924_low_18
Description: NF14924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14924_low_18
NF14924_low_18
[»] chr5 (2 HSPs)
chr5 (115-312)||(34087851-34088048)
chr5 (46-85)||(34087792-34087831)
[»] chr8 (3 HSPs)
chr8 (115-151)||(4785717-4785753)
chr8 (188-258)||(10661668-10661739)
chr8 (115-151)||(13325790-13325826)
[»] chr6 (5 HSPs)
chr6 (115-155)||(24641281-24641321)
chr6 (200-258)||(25137687-25137745)
chr6 (115-144)||(7169647-7169676)
chr6 (115-155)||(4577579-4577619)
chr6 (218-258)||(14565019-14565059)
[»] chr1 (2 HSPs)
chr1 (115-151)||(26344607-26344643)
chr1 (115-151)||(6248566-6248602)
[»] chr4 (4 HSPs)
chr4 (115-153)||(1564604-1564642)
chr4 (115-144)||(41325893-41325922)
chr4 (200-236)||(6333856-6333892)
chr4 (115-151)||(23449534-23449570)
[»] chr3 (1 HSPs)
chr3 (115-144)||(55467193-55467222)


Alignment Details
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 115 - 312
Target Start/End: Original strand, 34087851 - 34088048
Alignment:
Q  115 aaaatcaaaactgcaaaccgaaccaaaccacgcggttaagtnnnnnnnntgatttgaatatatcttaaccatatgcggtgttttaggtttcagtttggat 214  Q
    |||||||||||||||||||||||||||||||||||||||||        |||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  34087851 aaaatcaaaactgcaaaccgaaccaaaccacgcggttaagtaaaaaaaatgatttgaatatattttaaccatatgcggtgttttaggtttcagtttggat 34087950  T
Q  215 tagtttggtttgcggattttcttttagattgattcaattttgaatatccatattataacatactccctcaggtaggtttttactgttataaacaaaaa 312  Q
    ||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34087951 tagtttggtttgcagattttcttttagattgattcaattttgaacatccatattataacatactccctcaggtaggtttttactgttataaacaaaaa 34088048  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 46 - 85
Target Start/End: Original strand, 34087792 - 34087831
Alignment:
Q  46 tgtcttataggtgatatatacttagtgtttttcttatatt 85  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  34087792 tgtcttataggtgatatatacttagtgtttttcttatatt 34087831  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 4785717 - 4785753
Alignment:
Q  115 aaaatcaaaactgcaaaccgaaccaaaccacgcggtt 151  Q
    |||||||||||||||||||||||||||||| ||||||    
T  4785717 aaaatcaaaactgcaaaccgaaccaaaccatgcggtt 4785753  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 188 - 258
Target Start/End: Original strand, 10661668 - 10661739
Alignment:
Q  188 tgcggtgtttta-ggtttcagtttggattagtttggtttgcggattttcttttagattgattcaattttgaa 258  Q
    |||||| ||||| |||||||||||||||| ||||||||||||| |||||| |||| ||| |||  |||||||    
T  10661668 tgcggttttttacggtttcagtttggattggtttggtttgcggtttttctattaggttggttcggttttgaa 10661739  T

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Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 13325790 - 13325826
Alignment:
Q  115 aaaatcaaaactgcaaaccgaaccaaaccacgcggtt 151  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  13325790 aaaatcaaaaccgcaaaccgaaccaaaccatgcggtt 13325826  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 155
Target Start/End: Complemental strand, 24641321 - 24641281
Alignment:
Q  115 aaaatcaaaactgcaaaccgaaccaaaccacgcggttaagt 155  Q
    ||||||||||||||||||||||| |||||| ||||||||||    
T  24641321 aaaatcaaaactgcaaaccgaactaaaccatgcggttaagt 24641281  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 200 - 258
Target Start/End: Original strand, 25137687 - 25137745
Alignment:
Q  200 ggtttcagtttggattagtttggtttgcggattttcttttagattgattcaattttgaa 258  Q
    |||||| ||||||||| ||||||||||||| |||||| || | ||| ||||||||||||    
T  25137687 ggtttcggtttggattggtttggtttgcggtttttctgttgggttggttcaattttgaa 25137745  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 144
Target Start/End: Complemental strand, 7169676 - 7169647
Alignment:
Q  115 aaaatcaaaactgcaaaccgaaccaaacca 144  Q
    ||||||||||||||||||||||||||||||    
T  7169676 aaaatcaaaactgcaaaccgaaccaaacca 7169647  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 155
Target Start/End: Original strand, 4577579 - 4577619
Alignment:
Q  115 aaaatcaaaactgcaaaccgaaccaaaccacgcggttaagt 155  Q
    ||||| |||||||||||||||||||||||  ||||||||||    
T  4577579 aaaataaaaactgcaaaccgaaccaaaccttgcggttaagt 4577619  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 218 - 258
Target Start/End: Original strand, 14565019 - 14565059
Alignment:
Q  218 tttggtttgcggattttcttttagattgattcaattttgaa 258  Q
    |||||||||||| |||||| |||||||||||||| ||||||    
T  14565019 tttggtttgcggtttttctattagattgattcaactttgaa 14565059  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 26344643 - 26344607
Alignment:
Q  115 aaaatcaaaactgcaaaccgaaccaaaccacgcggtt 151  Q
    |||||||||||||||||||||||||||||| ||||||    
T  26344643 aaaatcaaaactgcaaaccgaaccaaaccatgcggtt 26344607  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 151
Target Start/End: Original strand, 6248566 - 6248602
Alignment:
Q  115 aaaatcaaaactgcaaaccgaaccaaaccacgcggtt 151  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  6248566 aaaatcaaaaccgcaaaccgaaccaaaccatgcggtt 6248602  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 153
Target Start/End: Complemental strand, 1564642 - 1564604
Alignment:
Q  115 aaaatcaaaactgcaaaccgaaccaaaccacgcggttaa 153  Q
    ||||||||||| |||||||||||||||||| ||||||||    
T  1564642 aaaatcaaaaccgcaaaccgaaccaaaccatgcggttaa 1564604  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 144
Target Start/End: Original strand, 41325893 - 41325922
Alignment:
Q  115 aaaatcaaaactgcaaaccgaaccaaacca 144  Q
    ||||||||||||||||||||||||||||||    
T  41325893 aaaatcaaaactgcaaaccgaaccaaacca 41325922  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 236
Target Start/End: Original strand, 6333856 - 6333892
Alignment:
Q  200 ggtttcagtttggattagtttggtttgcggattttct 236  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  6333856 ggtttcggtttggattagtttggtttgcggtttttct 6333892  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 115 - 151
Target Start/End: Complemental strand, 23449570 - 23449534
Alignment:
Q  115 aaaatcaaaactgcaaaccgaaccaaaccacgcggtt 151  Q
    |||||||||||||||||| ||||||||||| ||||||    
T  23449570 aaaatcaaaactgcaaactgaaccaaaccatgcggtt 23449534  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 115 - 144
Target Start/End: Complemental strand, 55467222 - 55467193
Alignment:
Q  115 aaaatcaaaactgcaaaccgaaccaaacca 144  Q
    ||||||||||||||||||||||||||||||    
T  55467222 aaaatcaaaactgcaaaccgaaccaaacca 55467193  T

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