View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14924_low_19 (Length: 317)
Name: NF14924_low_19
Description: NF14924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14924_low_19 |
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Alignment Details
Target: chr7 (Bit Score: 268; Significance: 1e-149; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 20 - 311
Target Start/End: Original strand, 27959146 - 27959437
Alignment:
| Q |
20 |
ggagcattaggaattctaaaagcatgcaaaaattcaaagacagtgaaaagagttatttacacttcaagtgcttctgctgtgtatatgcaagacaaagaag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27959146 |
ggagcattaggaattctaaaagcatgcaaaaattcaaagacagtgaaaagagttatttacacttcaagtgcttctgctgtgtatatgcaagacaaagaag |
27959245 |
T |
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| Q |
120 |
aagatgtaatggatgaaagttattggagtgatgtgaatattcttagaaatttgaagccttttgcttggtcatatgctgtttctaaaaccctagctgagaa |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27959246 |
aagatgtaatggatgaaagttattggagtgatgtgaatattcttagaaatttgaagccttttgcttggtcatatgctgtttctaaaaccctagctgagaa |
27959345 |
T |
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| Q |
220 |
agctgttctagaatttggagaacaacatgggttggatattgtgacacttgtaccaagttttgttgttggacccttcatttgccctatgcttc |
311 |
Q |
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| T |
27959346 |
agctgttcttgaatttggagaacaacatggtttggatattgtaactcttgtaccaagttttgttgttggaccctttatttgccctaagcttc |
27959437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 23 - 305
Target Start/End: Original strand, 27985457 - 27985739
Alignment:
| Q |
23 |
gcattaggaattctaaaagcatgcaaaaattcaaagacagtgaaaagagttatttacacttcaagtgcttctgctgtgtatatgcaagacaaagaagaag |
122 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| |||||| ||||||||| || |
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| T |
27985457 |
gcattaggaattctaaaagcatgcaaaaattcaaagacagtgaaaagagttgtttacacctcaagtgcttctgctgtgtgcatgcaaaacaaagaagtag |
27985556 |
T |
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| Q |
123 |
atgtaatggatgaaagttattggagtgatgtgaatattcttagaaatttgaagccttttgcttggtcatatgctgtttctaaaaccctagctgagaaagc |
222 |
Q |
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| T |
27985557 |
aggtaatggatgaaagttattggagtgatgtgaataatcttagaactttgaaaccttttgcttggtcatatgctgtttctaaaaccctagctgagaaagc |
27985656 |
T |
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| Q |
223 |
tgttctagaatttggagaacaacatgggttggatattgtgacacttgtaccaagttttgttgttggacccttcatttgcccta |
305 |
Q |
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|||||| |||||||||||||||||||| |||||||||||||| ||| |||| | ||||||||||||||| |||||||| |||| |
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| T |
27985657 |
tgttcttgaatttggagaacaacatggtttggatattgtgactcttctacccacttttgttgttggacctttcatttgtccta |
27985739 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 20 - 305
Target Start/End: Original strand, 27994636 - 27994921
Alignment:
| Q |
20 |
ggagcattaggaattctaaaagcatgcaaaaattcaaagacagtgaaaagagttatttacacttcaagtgcttctgctgtgtatatgcaagacaaagaag |
119 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||| |||||| ||||||| |
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| T |
27994636 |
ggagcattaggaattctaaaagcatgcaaaaattcaaagacattgaaaagagttatttacacctctagtgcttctgctgtgtatacgcaagataaagaag |
27994735 |
T |
|
| Q |
120 |
aagatgtaatggatgaaagttattggagtgatgtgaatattcttagaaatttgaagccttttgcttggtcatatgctgtttctaaaaccctagctgagaa |
219 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| ||||||||| || ||||||||||| |
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| T |
27994736 |
aagatacaatggatgaaagttattggagtgatgtgaatattcttagaactttgaagccatttgcttggtcatatggtgtttctaagacactagctgagaa |
27994835 |
T |
|
| Q |
220 |
agctgttctagaatttggagaacaacatgggttggatattgtgacacttgtaccaagttttgttgttggacccttcatttgcccta |
305 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||| |||||||| |||| |
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| T |
27994836 |
agctgttcttgaatttggagaacaacatgggttggatattgtgactcttgtaccaccttttgttgtaggacctttcatttgtccta |
27994921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 24 - 300
Target Start/End: Original strand, 28013318 - 28013594
Alignment:
| Q |
24 |
cattaggaattctaaaagcatgcaaaaattcaaagacagtgaaaagagttatttacacttcaagtgcttctgctgtgtatatgcaagacaaagaagaaga |
123 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||| ||||| || || |
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| T |
28013318 |
cattaggaattctaaaagcatgcaaaaattcaaagaccgtgaagagagttatttacacttcaagtgcttctgctgtgtattggcaagataaagatgatga |
28013417 |
T |
|
| Q |
124 |
tgtaatggatgaaagttattggagtgatgtgaatattcttagaaatttgaagccttttgcttggtcatatgctgtttctaaaaccctagctgagaaagct |
223 |
Q |
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|||||||||||| |||||||||||||||| ||| |||||||| ||||||| || ||||||||||||||| | |||||||||| | || ||||||||| |
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| T |
28013418 |
tgtaatggatgagagttattggagtgatgaaaatcttcttagagatttgaaaccatttgcttggtcatattcaatttctaaaactatggcagagaaagct |
28013517 |
T |
|
| Q |
224 |
gttctagaatttggagaacaacatgggttggatattgtgacacttgtaccaagttttgttgttggacccttcatttg |
300 |
Q |
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||||| |||||||||||||||||||| || ||| ||||||| | |||||| ||||||| ||||||| |||||||| |
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| T |
28013518 |
gttcttgaatttggagaacaacatggtttagatgttgtgactataataccaacttttgttcttggaccattcatttg |
28013594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 20 - 311
Target Start/End: Original strand, 28005375 - 28005666
Alignment:
| Q |
20 |
ggagcattaggaattctaaaagcatgcaaaaattcaaagacagtgaaaagagttatttacacttcaagtgcttctgctgtgtatatgcaagacaaagaag |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| || |||||| |||||| ||||| | |
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| T |
28005375 |
ggagcattaggaattctaaaagcatgcaaaaattcaaagaccgtgaagagagttatttacacttcaagtgcttcagcagtgtattggcaagataaagatg |
28005474 |
T |
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| Q |
120 |
aagatgtaatggatgaaagttattggagtgatgtgaatattcttagaaatttgaagccttttgcttggtcatatgctgtttctaaaaccctagctgagaa |
219 |
Q |
| |
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| ||||||||||||| |||||||||||||||| |||||||||||| ||||||| || |||| |||||| ||| | |||||||||| | || ||||| |
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| T |
28005475 |
acaatgtaatggatgagagttattggagtgatgaaaatattcttagagatttgaaaccatttggttggtcgtattcaatttctaaaacaatggcagagaa |
28005574 |
T |
|
| Q |
220 |
agctgttctagaatttggagaacaacatgggttggatattgtgacacttgtaccaagttttgttgttggacccttcatttgccctatgcttc |
311 |
Q |
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| T |
28005575 |
ggttgttctagagtttggagaacaacttggtttagatgttgtgactataataccaactttagttgttggatccttcatttgtcctaagcttc |
28005666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 249
Target Start/End: Original strand, 27944600 - 27944826
Alignment:
| Q |
23 |
gcattaggaattctaaaagcatgcaaaaattcaaagacagtgaaaagagttatttacacttcaagtgcttctgctgtgtatatgcaa-gacaaagaagaa |
121 |
Q |
| |
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|||||||| ||| |||||||||| ||||||||||||||||| ||| |||| ||||||||||||| ||||||||| | || ||| | ||||| || |
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| T |
27944600 |
gcattaggcattttaaaagcatgtgtgaattcaaagacagtgaagagatttatatacacttcaagtggttctgctgt-ttcattcaatggaaaagacaaa |
27944698 |
T |
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| Q |
122 |
gatgtaatggatgaaagttattggagtgatgtgaatattcttagaaatttgaagccttttgcttggtcatatgctgtttctaaaaccctagctgagaaag |
221 |
Q |
| |
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||||| ||||||| ||| ||||||||||||| || | ||||||| | | || || |||| |||| |||||||||||||| || | |||||||||| |
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| T |
27944699 |
gatgtgttggatgagagtgattggagtgatgttgatttgcttagaagtgttaaaccatttggttggaattatgctgtttctaagacattggctgagaaag |
27944798 |
T |
|
| Q |
222 |
ctgttctagaatttggagaacaacatgg |
249 |
Q |
| |
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||||||| |||||||| |||||| |||| |
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|
| T |
27944799 |
ctgttcttgaatttggtgaacaaaatgg |
27944826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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