View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14924_low_20 (Length: 311)
Name: NF14924_low_20
Description: NF14924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14924_low_20 |
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Alignment Details
Target: chr4 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 9 - 293
Target Start/End: Original strand, 48530335 - 48530620
Alignment:
| Q |
9 |
agcacagaatcaggaaatggcggcaacgtcacaagatatgaatcaattccgccaatcgttggagatacgaagacaattaattttg-caaaacctctagtg |
107 |
Q |
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| T |
48530335 |
agcactgaatcaagaaatggcggcaacgttagaagctataaatcaattccgccaatcgttggagatacgaagacaattaattttgacaaaacctctagtg |
48530434 |
T |
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| Q |
108 |
atggtggacaatattccctgtgaaattgatgaggttgatataaattactgcttcaattagactattttttatgaattttggtaataattatgagggttat |
207 |
Q |
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| T |
48530435 |
atggtggacaatattccctgtgaaattgatgaggttattataaattactgattcaatttgactattttttatgaattttggtaataatgatgagggttat |
48530534 |
T |
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| Q |
208 |
ttctctagggtttgtttttaggttatgttgattctgcattgaacaaggttggtttaaaaaatgtgaatgttactcacattttgacc |
293 |
Q |
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| T |
48530535 |
ttctctagggtttgtttttaggttaggttgattctgcattgaacaaggttggtttgaaaaatgtgaatgttactcacattttgacc |
48530620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 213 - 292
Target Start/End: Original strand, 48557423 - 48557502
Alignment:
| Q |
213 |
tagggtttgtttttaggttatgttgattctgcattgaacaaggttggtttaaaaaatgtgaatgttactcacattttgac |
292 |
Q |
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| T |
48557423 |
tagggtttgtttttgggttcagttggttctgctacgaacaaggttggtttaaaaaatgtgaatgttactcacattttgac |
48557502 |
T |
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