View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14924_low_25 (Length: 277)
Name: NF14924_low_25
Description: NF14924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14924_low_25 |
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Alignment Details
Target: chr5 (Bit Score: 240; Significance: 1e-133; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 33731526 - 33731279
Alignment:
| Q |
19 |
gatgaaaggtttagcagaagacgcactcttcctcctccttttcatccttatcaagacaatgtcaataacatgtcttctttacctacaacaacattttggg |
118 |
Q |
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| T |
33731526 |
gatgaaaggtttagcagaagacacactcttcctcctccttttcatccttatcaagacaatgtcaataacatgtcttctttacctacaacaacattttggg |
33731427 |
T |
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| Q |
119 |
atcatttcatcatggatgaagatgttgatgtagaagcaggactaagtagtactactactctgtctgaaattaatagctctcctggtggtcctgcatcatt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33731426 |
atcatttcatcatggatgaagatgttgatgtagaagcaggactaagtagtactactactctgtctgaaattaatagctctcctggtggtcctgcatcatt |
33731327 |
T |
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| Q |
219 |
tctatatccctctgcagcaacaagagaaacaacaagttcttcttctca |
266 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
33731326 |
tctatatccctctgcagcaacaagagaagcaacaagttcttcttctca |
33731279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 19 - 266
Target Start/End: Complemental strand, 33802905 - 33802658
Alignment:
| Q |
19 |
gatgaaaggtttagcagaagacgcactcttcctcctccttttcatccttatcaagacaatgtcaataacatgtcttctttacctacaacaacattttggg |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33802905 |
gatgaaaggtttagcagaagacgcactcttcctcctccttttcatccttatcaagacaatgtcaataacatgtcttctttacctacaacaacattttggg |
33802806 |
T |
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| Q |
119 |
atcatttcatcatggatgaagatgttgatgtagaagcaggactaagtagtactactactctgtctgaaattaatagctctcctggtggtcctgcatcatt |
218 |
Q |
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| T |
33802805 |
atcatttcatcatggatgaagatgttgatgtagaagcaggactaagtagtactactactctgtctgaaattaatagctctcctggtggtcctgcatcatt |
33802706 |
T |
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| Q |
219 |
tctatatccctctgcagcaacaagagaaacaacaagttcttcttctca |
266 |
Q |
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| T |
33802705 |
tctatatccctctgcagcaacaagagaagcaacatgttcttcttctca |
33802658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 33 - 200
Target Start/End: Original strand, 6126204 - 6126368
Alignment:
| Q |
33 |
cagaagacgcactcttcctcctccttttcatccttatcaagacaatgtcaataacatgtcttctttacctacaacaacattttgggatcatttcatcatg |
132 |
Q |
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||||||||||||||||||||||||||||||| | |||||||||||||| |||| |||||||||||| | ||||||||||||| | ||| | ||| |
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| T |
6126204 |
cagaagacgcactcttcctcctccttttcatattcatcaagacaatgtc---aacacgtcttctttaccgcaagaaacattttgggataagttcttgatg |
6126300 |
T |
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| Q |
133 |
gatgaagatgttgatgtagaagcaggactaagtagtactactactctgtctgaaattaatagctctcc |
200 |
Q |
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||||||||| |||| |||| ||||||| ||||||| ||||||||| || |||||||||||| |||| |
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| T |
6126301 |
tatgaagatgctgatatagatgcaggaccaagtagtgctactactcagttcgaaattaatagccctcc |
6126368 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 31 - 200
Target Start/End: Original strand, 6145621 - 6145784
Alignment:
| Q |
31 |
agcagaagacgcactcttcctcctccttttcatccttatcaagacaatgtcaataacatgtcttctttacctacaacaacattttgggatcatttcatca |
130 |
Q |
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|||||||||| |||| |||||||||||||||||| | |||||||||||||| ||||||||||| | || | ||||||||||||||||||| | | |
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| T |
6145621 |
agcagaagacacacttttcctcctccttttcatcttcatcaagacaatgtc---aacatgtcttcatcac---aagaaacattttgggatcatttcctga |
6145714 |
T |
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| Q |
131 |
tggatgaagatgttgatgtagaagcaggactaagtagtactactactctgtctgaaattaatagctctcc |
200 |
Q |
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|| ||||||||| |||| || | ||||||| ||||||| |||| | || ||| |||||||||||| |||| |
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| T |
6145715 |
tgaatgaagatgatgatataaatgcaggaccaagtagtgctacaaatcggtccgaaattaatagccctcc |
6145784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 34283397 - 34283454
Alignment:
| Q |
209 |
ctgcatcatttctatatccctctgcagcaacaagagaaacaacaagttcttcttctca |
266 |
Q |
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|||||||||||||||||||||||||||||| ||||| | || |||||||||||||||| |
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| T |
34283397 |
ctgcatcatttctatatccctctgcagcaataagaggagcagcaagttcttcttctca |
34283454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 134 - 192
Target Start/End: Complemental strand, 10343426 - 10343368
Alignment:
| Q |
134 |
atgaagatgttgatgtagaagcaggactaagtagtactactactctgtctgaaattaat |
192 |
Q |
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|||||| ||||||||||| ||||||| || ||||||||||||||||||| |||||||| |
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| T |
10343426 |
atgaagttgttgatgtaggcgcaggaccaaatagtactactactctgtctcaaattaat |
10343368 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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