View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14924_low_26 (Length: 273)
Name: NF14924_low_26
Description: NF14924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14924_low_26 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 38287475 - 38287745
Alignment:
| Q |
1 |
caaatacacacacattcatgtcaggagaaaatatactcgtaaattaagaatgcaatannnnnnngtgttaaccctctggtttctcaggaaaaagaggttc |
100 |
Q |
| |
|
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
38287475 |
caaataaacacacattcatg-caggagaaaatatactcgtaaattaagaatgcaatatttttt-gtgttaaccctctggtttctcagaaaaaagaggttc |
38287572 |
T |
|
| Q |
101 |
ggtcatcaggcaaggataatctaaccaataattgtttaacttaggaatcgaattcggattctttcgaacgattcgtctttgctgaaattcattaaccact |
200 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||||| | ||||||||||| ||||||||| |||||||||||| |
|
|
| T |
38287573 |
ggtcatcagacaaggataatctaatcaataattgtttaacttaagaatcgaattcggattcttccaaacgattcgtcattgctgaaactcattaaccact |
38287672 |
T |
|
| Q |
201 |
tgagttctattgcttgattaggaatgcaaaatttgttactggaaaaaacgacttacatatt--cttggacatg |
271 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
38287673 |
tgagttctattgcttgattaggaatgcaaaatttgttactagaaaaaacgacttacatattaacttggacatg |
38287745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 39844041 - 39843995
Alignment:
| Q |
158 |
attctttcgaacgattcgtctttgctgaaattcattaaccacttgag |
204 |
Q |
| |
|
||||||||||| |||||||||||| |||| |||||| |||||||||| |
|
|
| T |
39844041 |
attctttcgaatgattcgtctttggtgaagttcatttaccacttgag |
39843995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 168 - 216
Target Start/End: Original strand, 13043501 - 13043549
Alignment:
| Q |
168 |
acgattcgtctttgctgaaattcattaaccacttgagttctattgcttg |
216 |
Q |
| |
|
|||||||||| ||| ||||| |||||||||||||||| || |||||||| |
|
|
| T |
13043501 |
acgattcgtccttgatgaaactcattaaccacttgagctcaattgcttg |
13043549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 146 - 203
Target Start/End: Complemental strand, 34548585 - 34548528
Alignment:
| Q |
146 |
aatcgaattcggattctttcgaacgattcgtctttgctgaaattcattaaccacttga |
203 |
Q |
| |
|
|||||||||||| || || ||||||| ||||||||| |||| |||||||| ||||||| |
|
|
| T |
34548585 |
aatcgaattcgggttattccgaacgactcgtctttgatgaagttcattaatcacttga |
34548528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 156 - 204
Target Start/End: Complemental strand, 24363853 - 24363805
Alignment:
| Q |
156 |
ggattctttcgaacgattcgtctttgctgaaattcattaaccacttgag |
204 |
Q |
| |
|
|||||||| | ||||||||||| ||| ||||||| |||||||||||||| |
|
|
| T |
24363853 |
ggattcttccaaacgattcgtccttggtgaaattaattaaccacttgag |
24363805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 126 - 214
Target Start/End: Complemental strand, 8509732 - 8509644
Alignment:
| Q |
126 |
caataattgtttaacttaggaatcgaattcggattctttcgaacgattcgtctttgctgaaattcattaaccacttgagttctattgct |
214 |
Q |
| |
|
|||||||||||| | || |||||||||| ||||||| | ||| |||| || ||| ||||| |||||||| |||||||||| |||||| |
|
|
| T |
8509732 |
caataattgttttatctaagaatcgaatttggattctcccaaacaattcatcattgatgaaactcattaactacttgagttcgattgct |
8509644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University