View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14924_low_27 (Length: 264)

Name: NF14924_low_27
Description: NF14924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14924_low_27
NF14924_low_27
[»] scaffold0043 (4 HSPs)
scaffold0043 (1-250)||(28737-28986)
scaffold0043 (1-250)||(43595-43844)
scaffold0043 (71-99)||(28987-29015)
scaffold0043 (71-99)||(43845-43873)
[»] chr2 (2 HSPs)
chr2 (142-247)||(22668379-22668484)
chr2 (1-55)||(22395240-22395294)
[»] scaffold1163 (1 HSPs)
scaffold1163 (1-55)||(644-698)
[»] chr3 (5 HSPs)
chr3 (1-55)||(27388341-27388395)
chr3 (1-51)||(27980706-27980756)
chr3 (1-51)||(28006212-28006262)
chr3 (1-51)||(28085334-28085384)
chr3 (1-52)||(26631022-26631073)
[»] chr5 (2 HSPs)
chr5 (16-51)||(6164667-6164702)
chr5 (1-51)||(6164058-6164108)


Alignment Details
Target: scaffold0043 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 28986 - 28737
Alignment:
Q  1 atttggactctttgctagatacaagatggtcaagatctgatgatgagtccaacaatgtaaaggaaatttacaatccatgcaaaagagaaatcaatttcag 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  28986 atttggactctttgttagatacaagatggtcaagatctgatgatgagtccaacaaagtaaaggaaatttacaatccatgcaaaagagaaatcaatttcag 28887  T
Q  101 cgtatgcaactcaagtgcaatgacatgattcttaactggattattgccaagatcattttacgcaagcaagaaaattttggtaggattgatgatcttgact 200  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  28886 cgtatgcaactcaagtgcaatgacatgattcttcacttgattattgccaagatcattctacgcatgcaagaaaattttggtaggattgatgatcttgact 28787  T
Q  201 taaggttaatgtggctgatcaagaatagaaccttagtcaattggcctttg 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28786 taaggttaatgtggctgatcaagaatagaaccttagtcaattggcctttg 28737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 43844 - 43595
Alignment:
Q  1 atttggactctttgctagatacaagatggtcaagatctgatgatgagtccaacaatgtaaaggaaatttacaatccatgcaaaagagaaatcaatttcag 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  43844 atttggactctttgttagatacaagatggtcaagatctgatgatgagtccaacaaagtaaaggaaatttacaatccatgcaaaagagaaatcaatttcag 43745  T
Q  101 cgtatgcaactcaagtgcaatgacatgattcttaactggattattgccaagatcattttacgcaagcaagaaaattttggtaggattgatgatcttgact 200  Q
    ||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  43744 cgtatgcaactcaagtgcaatgacatgattcttcacttgattattgccaagatcattctacgcatgcaagaaaattttggtaggattgatgatcttgact 43645  T
Q  201 taaggttaatgtggctgatcaagaatagaaccttagtcaattggcctttg 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43644 taaggttaatgtggctgatcaagaatagaaccttagtcaattggcctttg 43595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 99
Target Start/End: Complemental strand, 29015 - 28987
Alignment:
Q  71 caatccatgcaaaagagaaatcaatttca 99  Q
    |||||||||||||||||||||||||||||    
T  29015 caatccatgcaaaagagaaatcaatttca 28987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 71 - 99
Target Start/End: Complemental strand, 43873 - 43845
Alignment:
Q  71 caatccatgcaaaagagaaatcaatttca 99  Q
    |||||||||||||||||||||||||||||    
T  43873 caatccatgcaaaagagaaatcaatttca 43845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 142 - 247
Target Start/End: Original strand, 22668379 - 22668484
Alignment:
Q  142 tattgccaagatcattttacgcaagcaagaaaattttggtaggattgatgatcttgacttaaggttaatgtggctgatcaagaatagaaccttagtcaat 241  Q
    |||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  22668379 tattgccaggatcattttatgcaagcaagaaaattttggtaggattgatgatcttgacttaaggttaatgtggttgatcaagaatagaactttagtcaat 22668478  T
Q  242 tggcct 247  Q
    ||||||    
T  22668479 tggcct 22668484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 22395294 - 22395240
Alignment:
Q  1 atttggactctttgctagatacaagatggtcaagatctgatgatgagtccaacaa 55  Q
    |||||||||||| |  |||||||||||||||||| ||||||||||||||||||||    
T  22395294 atttggactcttggtcagatacaagatggtcaaggtctgatgatgagtccaacaa 22395240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1163 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: scaffold1163
Description:

Target: scaffold1163; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 698 - 644
Alignment:
Q  1 atttggactctttgctagatacaagatggtcaagatctgatgatgagtccaacaa 55  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  698 atttggactctttgttagatacaagatggtcaaggtctgatgatgagtccaacaa 644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 6e-18; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 27388341 - 27388395
Alignment:
Q  1 atttggactctttgctagatacaagatggtcaagatctgatgatgagtccaacaa 55  Q
    |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  27388341 atttggactctttgttagatacaagatggtcaaggtctgatgatgagtccaacaa 27388395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 27980756 - 27980706
Alignment:
Q  1 atttggactctttgctagatacaagatggtcaagatctgatgatgagtcca 51  Q
    |||||||||||| | ||||||||||||||||||| ||||||||||||||||    
T  27980756 atttggactcttggttagatacaagatggtcaaggtctgatgatgagtcca 27980706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 28006262 - 28006212
Alignment:
Q  1 atttggactctttgctagatacaagatggtcaagatctgatgatgagtcca 51  Q
    |||||||||||| | ||||||||||||||||||| ||||||||||||||||    
T  28006262 atttggactcttggttagatacaagatggtcaaggtctgatgatgagtcca 28006212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 28085384 - 28085334
Alignment:
Q  1 atttggactctttgctagatacaagatggtcaagatctgatgatgagtcca 51  Q
    |||||||||||| | ||||||||||||||||||| ||||||||||||||||    
T  28085384 atttggactcttggttagatacaagatggtcaaggtctgatgatgagtcca 28085334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 26631073 - 26631022
Alignment:
Q  1 atttggactctttgctagatacaagatggtcaagatctgatgatgagtccaa 52  Q
    |||||||||||| | |||||||||||| |||||| ||||| |||||||||||    
T  26631073 atttggactcttggttagatacaagatcgtcaaggtctgacgatgagtccaa 26631022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 16 - 51
Target Start/End: Original strand, 6164667 - 6164702
Alignment:
Q  16 tagatacaagatggtcaagatctgatgatgagtcca 51  Q
    ||||||||||||||||||| ||||||||||||||||    
T  6164667 tagatacaagatggtcaaggtctgatgatgagtcca 6164702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 6164108 - 6164058
Alignment:
Q  1 atttggactctttgctagatacaagatggtcaagatctgatgatgagtcca 51  Q
    |||||||||| | | |||||| |||||||||||| ||||||||||||||||    
T  6164108 atttggactcgtggttagatataagatggtcaaggtctgatgatgagtcca 6164058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University