View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14924_low_31 (Length: 252)
Name: NF14924_low_31
Description: NF14924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14924_low_31 |
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Alignment Details
Target: chr1 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 1 - 113
Target Start/End: Original strand, 6634721 - 6634833
Alignment:
| Q |
1 |
tactcgatgaatctacatattcaaaatatgcaactcttcaactatatacaaagtcattannnnnnnctcaacaatattgaaaagtctcatattcttcact |
100 |
Q |
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| T |
6634721 |
tactcgatgaatctacatattcaaaatatgcaactcttcaactatatacaaagtcattatttttttctcaacaatattgaaaagtctcatattcttcact |
6634820 |
T |
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| Q |
101 |
tcacaattgtctc |
113 |
Q |
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| T |
6634821 |
tcacaattgtctc |
6634833 |
T |
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Target: chr1; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 178 - 238
Target Start/End: Original strand, 6634904 - 6634964
Alignment:
| Q |
178 |
ccttccctaatcaagaatcaagagaaaatggtgtctgcaaaagatcataaggtgcccaaag |
238 |
Q |
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| T |
6634904 |
ccttccctaatcaagaatcaagagaaaatggtgtctgcaaaagatcataaggtgcccaaag |
6634964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 188 - 240
Target Start/End: Original strand, 52163809 - 52163861
Alignment:
| Q |
188 |
tcaagaatcaagagaaaatggtgtctgcaaaagatcataaggtgcccaaagtg |
240 |
Q |
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||||||||||| ||||||||| || || || |||||||| ||||||||||||| |
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| T |
52163809 |
tcaagaatcaaaagaaaatggagtttgtaacagatcatagggtgcccaaagtg |
52163861 |
T |
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