View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14924_low_33 (Length: 250)
Name: NF14924_low_33
Description: NF14924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14924_low_33 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 4e-96; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 915520 - 915270
Alignment:
| Q |
11 |
atatctgtgatggcttttggaatttgagttgtgggaagtttggacttccaatagaattcaggtggtaaggtagcatgggttgccaccagtgcaagctgta |
110 |
Q |
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| T |
915520 |
atatctgtgatggcttttggaatttgagttgtgggaagtttggacttccaatacaattcaggtggtaaggcagcatgggttgccaccagtgcaagctgca |
915421 |
T |
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| Q |
111 |
atacaacatttataatattttagtatttatttatgaaatgaaataatgctat-------------aaaatatatgctgacacgtgatagattagaaattt |
197 |
Q |
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| T |
915420 |
atacaaca--tatcatattttagtatttatttatgaaatgaaataatgctataaaatatatgggaaaaatatatgctgacacttgatagattagaaattt |
915323 |
T |
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| Q |
198 |
ggaaacgggtgcttacattgagagagataaagatggataggtaaggaaactcc |
250 |
Q |
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| T |
915322 |
ggaaacgggtgcttacattgagagagataaagatggataggtaaggaaactcc |
915270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 923579 - 923320
Alignment:
| Q |
11 |
atatctgtgatggcttttggaatttgagttgtgggaagtttggacttccaatagaattcaggtggtaaggtagcatgggttgccaccagtgcaagctgta |
110 |
Q |
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| T |
923579 |
atatctgtgatggcttttggaatttgagttgtgggaagtttggacttccaatacaattcaggtggtaaggcagcatgagttgccacaagtgcaagctgca |
923480 |
T |
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| Q |
111 |
atacaacatttataatattttagtatttatttatgaaatgaaataatgctataaa-------------------atatatgctgacacgtgatagattag |
191 |
Q |
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| T |
923479 |
atacaacatttttcatattttagtatttacttatgaaatgaaataatgctaaaaaggtaatatatgaaaaaagtatatatgctgaaacttgataggttag |
923380 |
T |
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| Q |
192 |
-aaatttggaaacgggtgcttacattgagagagataaagatggataggtaaggaaactcc |
250 |
Q |
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| T |
923379 |
aaaatttggaaacgggtgcttacattgagagagataaagatggataggtaaggaaactcc |
923320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 248
Target Start/End: Complemental strand, 908985 - 908730
Alignment:
| Q |
11 |
atatctgtgatggcttttggaatttgagttgtgggaagtttggacttccaatagaattcaggtggtaaggtagcatgggttgccaccagtgcaagctgta |
110 |
Q |
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| T |
908985 |
atatctgtgatggcttttggaatttgagttgtgggaagtttggacttccaatacaattcaggtggtaaggtagcatgggttgccaccagtgcaagctgca |
908886 |
T |
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| Q |
111 |
atacaacatttataatattttagtatttatttatgaaatgaaataatgcta------------------taaaatatatgctgacacgtgatagattaga |
192 |
Q |
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| T |
908885 |
atacaacatttatcatattctagtatttatttttgaaatgaaataatgctaaaaaggtaatatatggggaaaagtatatgttgacacttgataaattaga |
908786 |
T |
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| Q |
193 |
aatttggaaacgggtgcttacattgagagagataaagatggataggtaaggaaact |
248 |
Q |
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| T |
908785 |
aatttggaagcgggtgcttacactgagagatataaagatggatatgtaagcaaact |
908730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 13 - 141
Target Start/End: Complemental strand, 901121 - 900993
Alignment:
| Q |
13 |
atctgtgatggcttttggaatttgagttgtgggaagtttggacttccaatagaattcaggtggtaaggtagcatgggttgccaccagtgcaagctgtaat |
112 |
Q |
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| T |
901121 |
atctatgatggcttttggcatttgagttgttggaagtttggacctccagtacaattcagggggtaatgcagcatgggttgctacaagtgcaagctgcaat |
901022 |
T |
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| Q |
113 |
acaacatttataatattttagtatttatt |
141 |
Q |
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| T |
901021 |
acaacatttatcatattttaatatttatt |
900993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 13 - 119
Target Start/End: Complemental strand, 934798 - 934692
Alignment:
| Q |
13 |
atctgtgatggcttttggaatttgagttgtgggaagtttggacttccaatagaattcaggtggtaaggtagcatgggttgccaccagtgcaagctgtaat |
112 |
Q |
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| T |
934798 |
atctgtgatggcttttggcatttgagttgtgggaagtttggacttccagtacacttcagggggtaaggcagcatgggttgctacaagtgcaagctgcaat |
934699 |
T |
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| Q |
113 |
acaacat |
119 |
Q |
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| T |
934698 |
acaacat |
934692 |
T |
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