View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14924_low_37 (Length: 241)

Name: NF14924_low_37
Description: NF14924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14924_low_37
NF14924_low_37
[»] chr8 (2 HSPs)
chr8 (11-95)||(23566755-23566839)
chr8 (112-172)||(23572910-23572970)
[»] chr3 (1 HSPs)
chr3 (145-225)||(28868462-28868542)


Alignment Details
Target: chr8 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 11 - 95
Target Start/End: Original strand, 23566755 - 23566839
Alignment:
Q  11 cataggcgtgctggctggtttgtcgcaaactcgtgtttgatagaatatcaagggtgtatttcctttgacatatatcgatgccttc 95  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||    
T  23566755 cataggcgtgctggctggtttgtcgcaaactcgtgtctgatagaatatcaagggtgtatttcctttgacatacattgatgccttc 23566839  T

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Target: chr8; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 112 - 172
Target Start/End: Original strand, 23572910 - 23572970
Alignment:
Q  112 cttcaacggatggaacaattgttgcagcagaaggacattctattgatactataaaacttgg 172  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23572910 cttcaccggatggaacaattgttgcagcagaaggacattctattgatactataaaacttgg 23572970  T

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Target: chr3 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 145 - 225
Target Start/End: Complemental strand, 28868542 - 28868462
Alignment:
Q  145 gacattctattgatactataaaacttggtgctgtcatccgttcatttgatttgaatggtgctcaggaagagggtgtgttaa 225  Q
    ||||||||||||||||   || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  28868542 gacattctattgatacatcaagacttggtgctgtcatccgttcatttgatttgaatgatgctcaggaagagggtgtgttaa 28868462  T

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