View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14924_low_38 (Length: 236)
Name: NF14924_low_38
Description: NF14924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14924_low_38 |
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| [»] chr3 (6 HSPs) |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 197; Significance: 1e-107; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 53072074 - 53071856
Alignment:
| Q |
16 |
ctattaacaataagtaaatttccaccaaaaacagaaaacaaaagttaagatcggtagaggtagagttaaacaaaataaataaaatatcaggaaatcaatc |
115 |
Q |
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||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
53072074 |
ctattaacaataagtaaatttccac-aaaaacagaaa-caaaagttaagatcggtagaggtaatgttaaacaaaataaataaaatatcaggaaatcaatc |
53071977 |
T |
|
| Q |
116 |
aaattatatgtgaaacctcatgaatgataagatgttgaagctttggactgtgttgaagcatttctagcaatgacatccactttttaggccaacttttatg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53071976 |
aaattatatgtgaaacctcatgaatgataagatgttgaagctttggactgtgttgaagcatttctagcaatgacatccactttttaggccaacttttatg |
53071877 |
T |
|
| Q |
216 |
ctctaagttagagaatagctc |
236 |
Q |
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||||||||||||||||||||| |
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| T |
53071876 |
ctctaagttagagaatagctc |
53071856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 53060053 - 53059833
Alignment:
| Q |
16 |
ctattaacaataagtaaatttccaccaaaaacagaaaacaaaagttaagatcggtagaggtagagttaaacaaaataaataaaatatcaggaaatcaatc |
115 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
53060053 |
ctattaacaataagtaaatttccaccaaaaacagaaaacaaaagttaagataggtagaggtagagttaaacaaaataaataacatatcaggaaatcaatc |
53059954 |
T |
|
| Q |
116 |
aaattatatgtgaaacctcatgaatgataagatgttgaagctttggactgtgttgaagcatttctagcaatgacatccactttttaggccaacttttatg |
215 |
Q |
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| T |
53059953 |
agattatatgtgaaacctcatgaatgataagatgttgaagctttggagtgtgctgaagcatttctagcatccacatccacttcttaggccaacttttacc |
53059854 |
T |
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| Q |
216 |
ctctaagttagagaatagctc |
236 |
Q |
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||||||||||||||||||||| |
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| T |
53059853 |
ctctaagttagagaatagctc |
53059833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 37419348 - 37419138
Alignment:
| Q |
21 |
aacaataagtaaatttccaccaaaaacagaaaacaaaagttaagatcggtagaggtagagttaaacaaaataaataaaatatcaggaaatcaatcaaatt |
120 |
Q |
| |
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||||||||||||||||||||| |||||| |||||| ||||||||| | ||||| |||||||||||||||||||| | ||||||| || ||||| |
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| T |
37419348 |
aacaataagtaaatttccacccaaaacaagaaacaagagttaagatatgcagaggaagagttaaacaaaataaata-----tgaggaaatggatgaaatt |
37419254 |
T |
|
| Q |
121 |
atatgtgaaacctcatgaatgataagatgttgaagctttggactgtgttgaagcatttctagcaatgacatccactttttaggccaacttttatgctcta |
220 |
Q |
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||||| |||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||| || ||||||| ||||||||||||||| ||| |
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| T |
37419253 |
atatgcgaaacctcgtaaatgataagatgttgaagctttggactgttttgaagcatttctagcatccacgtccacttcttaggccaacttttaccagcta |
37419154 |
T |
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| Q |
221 |
agttagagaatagctc |
236 |
Q |
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|||||||||||||||| |
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| T |
37419153 |
agttagagaatagctc |
37419138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 112 - 234
Target Start/End: Complemental strand, 53062970 - 53062848
Alignment:
| Q |
112 |
aatcaaattatatgtgaaacctcatgaatgataagatgttgaagctttggactgtgttgaagcatttctagcaatgacatccactttttaggccaacttt |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| || ||||||| |||| |||||||| |
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| T |
53062970 |
aatcaaattatatgtgaaacctcatgaatgataagatgttaaagctttggactgtgctgaagcatttctagcatccacgtccacttcttagtccaacttt |
53062871 |
T |
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| Q |
212 |
tatgctctaagttagagaatagc |
234 |
Q |
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|| ||| || |||||||||||| |
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| T |
53062870 |
taccctcaaacttagagaatagc |
53062848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 89
Target Start/End: Complemental strand, 53063031 - 53062964
Alignment:
| Q |
24 |
aataagtaaatttccaccaaaaacagaaaacaaaagttaagatcggtagag--gtagagttaaacaaa |
89 |
Q |
| |
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|||||||||||||||||| |||||| |||||||||||||||| |||||| |||||||||| |||| |
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| T |
53063031 |
aataagtaaatttccacccaaaacaagaaacaaaagttaagatatgtagaggagtagagttaatcaaa |
53062964 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 53984960 - 53985016
Alignment:
| Q |
128 |
aaacctcatgaatgataagatgttgaagctttggactgtgttgaagcatttctagca |
184 |
Q |
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|||||| ||||||| ||||||||||||| || ||||| |||||||||| ||||||| |
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| T |
53984960 |
aaacctgatgaatggtaagatgttgaagtttgggactatgttgaagcacgtctagca |
53985016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 21 - 236
Target Start/End: Complemental strand, 6688266 - 6688049
Alignment:
| Q |
21 |
aacaataagtaaatttccaccaaaaacagaaaacaaaagttaagatc----ggtagaggtagagttaaacaaaataaataaaatatcaggaaatcaatca |
116 |
Q |
| |
|
||||||||||||||||||||| |||||| ||||||| ||||||||| |||| ||||||||||||||||||||| ||| ||||| ||||||||||| |
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| T |
6688266 |
aacaataagtaaatttccacccaaaacacaaaacaagagttaagatatataggtaaaggtagagttaaacaaaataactaa--tatcatgaaatcaatca |
6688169 |
T |
|
| Q |
117 |
aattatatgtgaaacctcatgaatgataagatgttgaagctttggactgtgttgaagcatttctagcaatgacatccactttttaggccaacttttatgc |
216 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| || || ||||||| | ||||||||||||| | |
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| T |
6688168 |
aagtatatgtgaaacctcatgaatgataagatgttgaagcttgggactgtgttgaagcatttctaccatccacttccacttctcaggccaacttttaccc |
6688069 |
T |
|
| Q |
217 |
tctaagttagagaatagctc |
236 |
Q |
| |
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| |||||||||||||||||| |
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| T |
6688068 |
tttaagttagagaatagctc |
6688049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 19 - 236
Target Start/End: Complemental strand, 31014631 - 31014415
Alignment:
| Q |
19 |
ttaacaataagtaaatttccaccaaaaacagaaaacaaaagttaag--atcggtagaggtagagttaaacaaaataaataaaatatcaggaaatcaatca |
116 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| ||| || | |
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| T |
31014631 |
ttaacaatatgtaaatttccaccaaaaacagaaaacaaaagttaagatataggtagaggtagagttaaacaaaataaataaaacatc---------atga |
31014541 |
T |
|
| Q |
117 |
aattatatgtgaaacctcatgaatgataagatgttgaagctttggactgtgttgaagcat------ttctagcaatgacatccactttttaggccaactt |
210 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||| |||||||| || ||||||| ||||||||| || |
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| T |
31014540 |
aattatatgtgaaaccttatgaatgataagatgttgaagcttgggactgtgttgaagcatttctacttctagcatccacttccacttgttaggccaagtt |
31014441 |
T |
|
| Q |
211 |
ttatgctctaagttagagaatagctc |
236 |
Q |
| |
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||||||| |||||||||||||||||| |
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| T |
31014440 |
ttatgctttaagttagagaatagctc |
31014415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 106; Significance: 4e-53; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 34036448 - 34036260
Alignment:
| Q |
19 |
ttaacaataagtaaatttccaccaaaaacagaaaacaaaagttaagatcggtagaggtagagttaaacaaaataaataaaatatcaggaaatcaatcaaa |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |
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| T |
34036448 |
ttaacaataagtaaatttccaccaaaaacagaaaacaaaagttaagataggtagaggtagagttaaacaaaataaata-------------------aaa |
34036368 |
T |
|
| Q |
119 |
ttatatgtgaaacctcatgaatgataagatgttgaagctttggactgtgttgaagcatttctagcaatgacatccactttttaggccaacttttatgctc |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||| ||||||||||||| ||||| |
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|
| T |
34036367 |
ttatatgtgaaacctcatgaatgataagatgttgaagcttgggactgtgttgaagcatttctagcatccacctccacttattaggccaactttgatgctt |
34036268 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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