View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14924_low_39 (Length: 229)
Name: NF14924_low_39
Description: NF14924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14924_low_39 |
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Alignment Details
Target: chr3 (Bit Score: 174; Significance: 9e-94; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 9e-94
Query Start/End: Original strand, 12 - 212
Target Start/End: Complemental strand, 26652579 - 26652378
Alignment:
| Q |
12 |
catagggactaaattaaaagtaaaaatataatattcatcatcttcatctctaaatctatctatcttcgttgttcttttgggtttaaagatgaaaaaccat |
111 |
Q |
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| T |
26652579 |
catacggactaaattgaaagtaaaaaaataatattcatcatcttcatctctaaatctatctatcttcgttgttcttttgggtttaaagatgaaaaaccat |
26652480 |
T |
|
| Q |
112 |
ataagttaatcatcaaaaacaagtcgcagcacataactaa-ttgccaagacaaccgaatcactaaagcacaacagtaaaaccactgcagagaccatcttt |
210 |
Q |
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|||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26652479 |
gtaagttaatcatcaaaaacaagtcgcagcacataaccaatttgccaagacaaccgaatcactaaagcacaacagtaaaaccactgcagagaccatcttt |
26652380 |
T |
|
| Q |
211 |
ct |
212 |
Q |
| |
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|| |
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| T |
26652379 |
ct |
26652378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 83 - 126
Target Start/End: Complemental strand, 29980120 - 29980077
Alignment:
| Q |
83 |
ttcttttgggtttaaagatgaaaaaccatataagttaatcatca |
126 |
Q |
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|||||||||||||||||||||||||| | ||||||||||||||| |
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| T |
29980120 |
ttcttttgggtttaaagatgaaaaactagataagttaatcatca |
29980077 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 83 - 125
Target Start/End: Original strand, 43539350 - 43539392
Alignment:
| Q |
83 |
ttcttttgggtttaaagatgaaaaaccatataagttaatcatc |
125 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||| |
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| T |
43539350 |
ttcttttgggtttaaagatgaaaaactagataagttaatcatc |
43539392 |
T |
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