View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14924_low_41 (Length: 218)
Name: NF14924_low_41
Description: NF14924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14924_low_41 |
 | |
|
| [»] chr3 (4 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 1606446 - 1606663
Alignment:
| Q |
1 |
cggcattgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1606446 |
cggcattgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatat |
1606545 |
T |
|
| Q |
101 |
ggcacaccgatagaaaactgagagatcggaggctgatcttagcgccacagcttgacccttgtgtggaccggcggcattttggaaggttatgtctcgtgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||| | |
|
|
| T |
1606546 |
ggcacaccgatagaaaactgagagatcggaggctgatcttagcgccactgcttgacccttgtgtggaccggcggtattttggaaggttatgtcacgtgca |
1606645 |
T |
|
| Q |
201 |
atgaagtgaagtccatca |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
1606646 |
atgaagtgaagtccatca |
1606663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 1629744 - 1629961
Alignment:
| Q |
1 |
cggcattgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatat |
100 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1629744 |
cggcgttgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatat |
1629843 |
T |
|
| Q |
101 |
ggcacaccgatagaaaactgagagatcggaggctgatcttagcgccacagcttgacccttgtgtggaccggcggcattttggaaggttatgtctcgtgaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
|
|
| T |
1629844 |
ggcacaccgatagaaaactgagagatcggacgctgatcttagcgccacagcttgacccttgtgtggaccggcggtattttggaaggttatgtctcgtgca |
1629943 |
T |
|
| Q |
201 |
atgaagtgaagtccatca |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
1629944 |
atgaagtgaagtccatca |
1629961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 6 - 218
Target Start/End: Complemental strand, 10820949 - 10820737
Alignment:
| Q |
6 |
ttgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcac |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||||| ||||| | || |
|
|
| T |
10820949 |
ttgccaaagatgaagtctacggtgccatagatgaagcattgtctgtaaaattgacgttgtgcatgagccatgagggtgtcttggtaacccgatattgtac |
10820850 |
T |
|
| Q |
106 |
accgatagaaaactgagagatcggaggctgatcttagcgccacagcttgacccttgtgtggaccggcggcattttggaaggttatgtctcgtgaaatgaa |
205 |
Q |
| |
|
|||| ||||| || |||||||| |||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||| |||| |||||| |
|
|
| T |
10820849 |
accggtagaagacggagagatcagaggctgatcggagcgccactgcttgacccttgtgtggaccggcggtattttggaaggttatgtcacgtgcaatgaa |
10820750 |
T |
|
| Q |
206 |
gtgaagtccatca |
218 |
Q |
| |
|
||||||||||||| |
|
|
| T |
10820749 |
gtgaagtccatca |
10820737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 6 - 218
Target Start/End: Original strand, 1623573 - 1623785
Alignment:
| Q |
6 |
ttgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcac |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||| || ||||| |||| |
|
|
| T |
1623573 |
ttgccaaagatgaagtctacggtgccatagatgaagcattgtcggtagaattgacgttgtgcatgagccatcagagtgtcttgatagcccgatatagcac |
1623672 |
T |
|
| Q |
106 |
accgatagaaaactgagagatcggaggctgatcttagcgccacagcttgacccttgtgtggaccggcggcattttggaaggttatgtctcgtgaaatgaa |
205 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| |||||||||||||| || ||||| ||||| || | |||||| ||||| ||||| |||| |||||| |
|
|
| T |
1623673 |
accgatagaagacagagagatcggaggctgatcggagcgccacagcttggcctttgtgaggaccagcagtattttgaaaggtaatgtcacgtgcaatgaa |
1623772 |
T |
|
| Q |
206 |
gtgaagtccatca |
218 |
Q |
| |
|
|||||||||||| |
|
|
| T |
1623773 |
atgaagtccatca |
1623785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 110; Significance: 1e-55; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 18781262 - 18781479
Alignment:
| Q |
1 |
cggcattgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatat |
100 |
Q |
| |
|
|||| ||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||| ||||| ||||| || |||||||| || || ||||| |
|
|
| T |
18781262 |
cggcgttgccaaagataaagtcgacggtgccatagatgaagcattgtctgtaaaattgacgttgcgcatgggccataagggtgtcttggtagcccgatat |
18781361 |
T |
|
| Q |
101 |
ggcacaccgatagaaaactgagagatcggaggctgatcttagcgccacagcttgacccttgtgtggaccggcggcattttggaaggttatgtctcgtgaa |
200 |
Q |
| |
|
|||||||||||||| || ||||||||||||||||||| ||||||||||||||||| || || ||||| || | |||||||||||||||||| || | | |
|
|
| T |
18781362 |
agcacaccgatagaagacagagagatcggaggctgatcggagcgccacagcttgacctttatgaggaccagcagtattttggaaggttatgtcgcgggca |
18781461 |
T |
|
| Q |
201 |
atgaagtgaagtccatca |
218 |
Q |
| |
|
||||| |||||||||||| |
|
|
| T |
18781462 |
atgaaatgaagtccatca |
18781479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 6 - 157
Target Start/End: Original strand, 12802833 - 12802984
Alignment:
| Q |
6 |
ttgccaaagatgaagtctacggtgccatagatgaagcattgtcgataaaattgacgttgtgcatgagccatcagagtgtcttgataacctgatatggcac |
105 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| | |||| || ||||||||||||||||| ||| |||| || |||||||| || ||| | || || |
|
|
| T |
12802833 |
ttgccaaagatgaagtcaacggtgccatagatgtaacattctctgtaaaattgacgttgtgcgtgaaccatgagggtgtcttggtagcctttaaaggaac |
12802932 |
T |
|
| Q |
106 |
accgatagaaaactgagagatcggaggctgatcttagcgccacagcttgacc |
157 |
Q |
| |
|
| || ||||| || || || || |||||||||| |||||||| |||||||| |
|
|
| T |
12802933 |
aacggtagaagacagataggtcagaggctgatcgaagcgccactgcttgacc |
12802984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University