View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14924_low_42 (Length: 214)
Name: NF14924_low_42
Description: NF14924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14924_low_42 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 173; Significance: 3e-93; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 3e-93
Query Start/End: Original strand, 18 - 198
Target Start/End: Complemental strand, 13751059 - 13750879
Alignment:
| Q |
18 |
aaaattagggaaaagaatgaagtattaacatacctgaacagcaacagccaaaccatcagcaagaagtgatgatgtcaaccaaatttgtaagcaaggttga |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13751059 |
aaaattagggaaaagaatgaagtattaacatacctgaacagcaacagccaaaccatcagcaagaagtgatgatgtcaaccagatttgtaagcaaggttga |
13750960 |
T |
|
| Q |
118 |
aatgcagccataggaactgaacctaaccttgctgccaatgatgctgcaaaggtcatacagaatgtcactgctactactctt |
198 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13750959 |
aatgcagccataggaacagaacctaaccttgctgccaatgatgctgcaaaggtcatacagaatgtcactgctactactctt |
13750879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 48 - 190
Target Start/End: Complemental strand, 13632411 - 13632269
Alignment:
| Q |
48 |
tacctgaacagcaacagccaaaccatcagcaagaagtgatgatgtcaaccaaatttgtaagcaaggttgaaatgcagccataggaactgaacctaacctt |
147 |
Q |
| |
|
|||||| ||||| | ||||||||||||||||| ||| || |||| ||||||| ||||| |||||||||||| |||||||| |||| ||||||||||||| |
|
|
| T |
13632411 |
tacctgtacagctatagccaaaccatcagcaaaaagggaggatgctaaccaaacttgtaggcaaggttgaaaggcagccatgggaattgaacctaacctt |
13632312 |
T |
|
| Q |
148 |
gctgccaatgatgctgcaaaggtcatacagaatgtcactgcta |
190 |
Q |
| |
|
|| ||||| |||||| || |||| ||||||||| ||||||| |
|
|
| T |
13632311 |
gcagccaaacttgctgctaaagtcacacagaatgttactgcta |
13632269 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 48 - 190
Target Start/End: Complemental strand, 13732823 - 13732681
Alignment:
| Q |
48 |
tacctgaacagcaacagccaaaccatcagcaagaagtgatgatgtcaaccaaatttgtaagcaaggttgaaatgcagccataggaactgaacctaacctt |
147 |
Q |
| |
|
|||||| ||||| | ||||||||||||||||| ||| || |||| ||||||| ||||| |||||||||||| |||||||| |||| ||||||||||||| |
|
|
| T |
13732823 |
tacctgtacagctatagccaaaccatcagcaaaaagggaggatgctaaccaaacttgtaggcaaggttgaaaggcagccatgggaattgaacctaacctt |
13732724 |
T |
|
| Q |
148 |
gctgccaatgatgctgcaaaggtcatacagaatgtcactgcta |
190 |
Q |
| |
|
|| ||||| |||||| || |||| ||||||||| ||||||| |
|
|
| T |
13732723 |
gcagccaaacttgctgctaaagtcacacagaatgttactgcta |
13732681 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 58 - 190
Target Start/End: Complemental strand, 9278561 - 9278429
Alignment:
| Q |
58 |
gcaacagccaaaccatcagcaagaagtgatgatgtcaaccaaatttgtaagcaaggttgaaatgcagccataggaactgaacctaaccttgctgccaatg |
157 |
Q |
| |
|
||||| || ||||||||||| ||||| |||||||||| ||||| ||||| || | ||| ||||||||||| |||| || ||||||||||||||| |||| |
|
|
| T |
9278561 |
gcaaccgctaaaccatcagcgagaagggatgatgtcatccaaacttgtagacaggtttggaatgcagccattggaattggacctaaccttgctgctaatg |
9278462 |
T |
|
| Q |
158 |
atgctgcaaaggtcatacagaatgtcactgcta |
190 |
Q |
| |
|
| |||| ||||||| |||||||||||||||| |
|
|
| T |
9278461 |
aggctgataaggtcacgcagaatgtcactgcta |
9278429 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University