View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14924_low_5 (Length: 515)

Name: NF14924_low_5
Description: NF14924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14924_low_5
NF14924_low_5
[»] chr6 (2 HSPs)
chr6 (19-509)||(677887-678377)
chr6 (39-77)||(31563729-31563767)
[»] chr5 (4 HSPs)
chr5 (42-76)||(13287354-13287388)
chr5 (22-77)||(2436975-2437030)
chr5 (27-75)||(21190998-21191046)
chr5 (38-78)||(39698632-39698672)
[»] chr8 (2 HSPs)
chr8 (22-77)||(25566894-25566949)
chr8 (43-77)||(12606734-12606768)
[»] chr7 (3 HSPs)
chr7 (42-77)||(38134335-38134370)
chr7 (22-64)||(18215150-18215192)
chr7 (28-77)||(38804489-38804538)
[»] chr2 (1 HSPs)
chr2 (38-77)||(44635573-44635612)
[»] scaffold0361 (1 HSPs)
scaffold0361 (27-77)||(14596-14646)
[»] scaffold0053 (1 HSPs)
scaffold0053 (27-77)||(8867-8917)
[»] chr4 (5 HSPs)
chr4 (27-77)||(34306744-34306794)
chr4 (49-77)||(1074848-1074876)
chr4 (29-77)||(3064868-3064916)
chr4 (24-76)||(18575984-18576036)
chr4 (28-76)||(40965341-40965389)
[»] chr3 (4 HSPs)
chr3 (42-76)||(25365546-25365580)
chr3 (27-77)||(55401144-55401194)
chr3 (43-76)||(23271937-23271970)
chr3 (25-77)||(11610576-11610628)
[»] scaffold0020 (1 HSPs)
scaffold0020 (22-79)||(135261-135318)
[»] chr1 (4 HSPs)
chr1 (42-79)||(16812640-16812677)
chr1 (38-79)||(22515825-22515866)
chr1 (27-75)||(1486646-1486694)
chr1 (42-78)||(2218312-2218348)


Alignment Details
Target: chr6 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 19 - 509
Target Start/End: Original strand, 677887 - 678377
Alignment:
Q  19 gttggtgtcgtgtccgagtccgagacacgcctaatctgaggagtgtatgtgcttcatagttcaacaagattaattattgataaaatcaatcaatatttga 118  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  677887 gttggtgtcgtgtccgagtccgagacactcctaatctgaggagtgtatgtgcttcatagttcaacaacgttaattattgataaaatcaatcaatatttga 677986  T
Q  119 tactttacaccaataacctaatactnnnnnnnntacaaatagtttatgcttnnnnnnntcacaaatatttttataaaagtgacaggattcagtttgcatg 218  Q
    ||||||||||||||||||| |||||        ||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  677987 tactttacaccaataaccttatactaaaaaaaatacaaatagtttatgcttaaaaaaatcacaaatatttttataaaagtgacaggattcagtttgcatg 678086  T
Q  219 accaaagggatttgtttagaagattacgatgatacagtttacctaatatgagattaagaaaggtttctagggattaggatccttttaagaaagcacaaag 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  678087 accaaagggatttgtttagaagattacgatgatacagtttacctaatatgagattaagaaaggtttctagggattaggatccttttaagaaagcacaaag 678186  T
Q  319 taatggtgtagtagtaaatgttagtgtcattctttgtcacattgtggtcattttactattggatatttaatttaacaatgggtttctatactatatggtg 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  678187 taatggtgtagtagtaaatgttagtgtcattctttgtcacattgtggtcattttactattggatatttaatttaacaatgggtttctatactatatggtg 678286  T
Q  419 gcctaaatggacaccacatgatgcagttttttgattctttgttagaaaaagaatctatcccattttacttgggactttttccctttgcttc 509  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  678287 gcctaaatggacaccacatgatgcagttttttgattctttgttagaaaaagaatctatcccattttacttgggactttttccctttgcttc 678377  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 39 - 77
Target Start/End: Complemental strand, 31563767 - 31563729
Alignment:
Q  39 cgagacacgcctaatctgaggagtgtatgtgcttcatag 77  Q
    |||||||||||||||||| ||||||||||||||||||||    
T  31563767 cgagacacgcctaatctgcggagtgtatgtgcttcatag 31563729  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 42 - 76
Target Start/End: Complemental strand, 13287388 - 13287354
Alignment:
Q  42 gacacgcctaatctgaggagtgtatgtgcttcata 76  Q
    |||||||||||||||||||||||||||||||||||    
T  13287388 gacacgcctaatctgaggagtgtatgtgcttcata 13287354  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 2436975 - 2437030
Alignment:
Q  22 ggtgtcgtgtccgagtccgagacacgcctaatctgaggagtgtatgtgcttcatag 77  Q
    ||||||||||||||  || |||||||||||||| |||||||||  |||||||||||    
T  2436975 ggtgtcgtgtccgacaccaagacacgcctaatccgaggagtgttcgtgcttcatag 2437030  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 21191046 - 21190998
Alignment:
Q  27 cgtgtccgagtccgagacacgcctaatctgaggagtgtatgtgcttcat 75  Q
    ||||||||| |||| ||||||||||||| |||||||||  |||||||||    
T  21191046 cgtgtccgactccgggacacgcctaatccgaggagtgtccgtgcttcat 21190998  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 38 - 78
Target Start/End: Original strand, 39698632 - 39698672
Alignment:
Q  38 ccgagacacgcctaatctgaggagtgtatgtgcttcatagt 78  Q
    ||||||||||||||||| |||||||||  ||||||||||||    
T  39698632 ccgagacacgcctaatccgaggagtgtccgtgcttcatagt 39698672  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 22 - 77
Target Start/End: Original strand, 25566894 - 25566949
Alignment:
Q  22 ggtgtcgtgtccgagtccgagacacgcctaatctgaggagtgtatgtgcttcatag 77  Q
    ||||||||||  | ||||| ||||||||||||| ||||||||| ||||||||||||    
T  25566894 ggtgtcgtgttggtgtccgggacacgcctaatccgaggagtgtctgtgcttcatag 25566949  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 43 - 77
Target Start/End: Original strand, 12606734 - 12606768
Alignment:
Q  43 acacgcctaatctgaggagtgtatgtgcttcatag 77  Q
    |||| ||||||||||||||||||||||||||||||    
T  12606734 acacacctaatctgaggagtgtatgtgcttcatag 12606768  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 42 - 77
Target Start/End: Complemental strand, 38134370 - 38134335
Alignment:
Q  42 gacacgcctaatctgaggagtgtatgtgcttcatag 77  Q
    ||||||||||||| ||||||||||||||||||||||    
T  38134370 gacacgcctaatccgaggagtgtatgtgcttcatag 38134335  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 18215192 - 18215150
Alignment:
Q  22 ggtgtcgtgtccgagtccgagacacgcctaatctgaggagtgt 64  Q
    ||||||||||||||  ||| |||||||||||||||||||||||    
T  18215192 ggtgtcgtgtccgacaccgggacacgcctaatctgaggagtgt 18215150  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 28 - 77
Target Start/End: Complemental strand, 38804538 - 38804489
Alignment:
Q  28 gtgtccgagtccgagacacgcctaatctgaggagtgtatgtgcttcatag 77  Q
    ||||||||  ||| |||| |||||||| ||||||||||||||||||||||    
T  38804538 gtgtccgacgccgggacatgcctaatccgaggagtgtatgtgcttcatag 38804489  T

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Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 77
Target Start/End: Original strand, 44635573 - 44635612
Alignment:
Q  38 ccgagacacgcctaatctgaggagtgtatgtgcttcatag 77  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  44635573 ccgagacacgcctaatctgaggagtgtccgtgcttcatag 44635612  T

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Target: scaffold0361 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 14596 - 14646
Alignment:
Q  27 cgtgtccgagtccgagacacgcctaatctgaggagtgtatgtgcttcatag 77  Q
    |||||||||  |||||||||||||||||  ||||||||| |||||||||||    
T  14596 cgtgtccgacaccgagacacgcctaatcgaaggagtgtacgtgcttcatag 14646  T

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Target: scaffold0053 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 8867 - 8917
Alignment:
Q  27 cgtgtccgagtccgagacacgcctaatctgaggagtgtatgtgcttcatag 77  Q
    |||||||||  ||||||||||||||||||||||||| |  |||||||||||    
T  8867 cgtgtccgacaccgagacacgcctaatctgaggagtctccgtgcttcatag 8917  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000005; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 77
Target Start/End: Complemental strand, 34306794 - 34306744
Alignment:
Q  27 cgtgtccgagtccgagacacgcctaatctgaggagtgtatgtgcttcatag 77  Q
    |||||||||  ||||||||||||||||||||||| |||  |||||||||||    
T  34306794 cgtgtccgacaccgagacacgcctaatctgaggaatgttcgtgcttcatag 34306744  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 49 - 77
Target Start/End: Original strand, 1074848 - 1074876
Alignment:
Q  49 ctaatctgaggagtgtatgtgcttcatag 77  Q
    |||||||||||||||||||||||||||||    
T  1074848 ctaatctgaggagtgtatgtgcttcatag 1074876  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 29 - 77
Target Start/End: Complemental strand, 3064916 - 3064868
Alignment:
Q  29 tgtccgagtccgagacacgcctaatctgaggagtgtatgtgcttcatag 77  Q
    ||||||| || ||||||||||||||| |||||||||  |||||||||||    
T  3064916 tgtccgactctgagacacgcctaatccgaggagtgtccgtgcttcatag 3064868  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 76
Target Start/End: Complemental strand, 18576036 - 18575984
Alignment:
Q  24 tgtcgtgtccgagtccgagacacgcctaatctgaggagtgtatgtgcttcata 76  Q
    ||||||||||||  ||| ||||||||||||  || ||||||||||||||||||    
T  18576036 tgtcgtgtccgaaaccgggacacgcctaattcgatgagtgtatgtgcttcata 18575984  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 40965341 - 40965389
Alignment:
Q  28 gtgtccgagtccgagacacgcctaatctgaggagtgtatgtgcttcata 76  Q
    ||||||||  || ||||||||||||||||||||||||  ||||||||||    
T  40965341 gtgtccgacaccaagacacgcctaatctgaggagtgtcggtgcttcata 40965389  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 42 - 76
Target Start/End: Original strand, 25365546 - 25365580
Alignment:
Q  42 gacacgcctaatctgaggagtgtatgtgcttcata 76  Q
    ||||||||||||||||||| |||||||||||||||    
T  25365546 gacacgcctaatctgaggaatgtatgtgcttcata 25365580  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 27 - 77
Target Start/End: Original strand, 55401144 - 55401194
Alignment:
Q  27 cgtgtccgagtccgagacacgcctaatctgaggagtgtatgtgcttcatag 77  Q
    |||||||||  ||||||||||||||||| |||||||||  |||||||||||    
T  55401144 cgtgtccgacaccgagacacgcctaatccgaggagtgtccgtgcttcatag 55401194  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 43 - 76
Target Start/End: Complemental strand, 23271970 - 23271937
Alignment:
Q  43 acacgcctaatctgaggagtgtatgtgcttcata 76  Q
    ||||||||||| ||||||||||||||||||||||    
T  23271970 acacgcctaatttgaggagtgtatgtgcttcata 23271937  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 25 - 77
Target Start/End: Original strand, 11610576 - 11610628
Alignment:
Q  25 gtcgtgtccgagtccgagacacgcctaatctgaggagtgtatgtgcttcatag 77  Q
    |||||||||||   || |||||||||||||||||||||||  |||||||||||    
T  11610576 gtcgtgtccgacatcgggacacgcctaatctgaggagtgtccgtgcttcatag 11610628  T

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Target: scaffold0020 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 22 - 79
Target Start/End: Complemental strand, 135318 - 135261
Alignment:
Q  22 ggtgtcgtgtccgagtccgagacacgcctaatctgaggagtgtatgtgcttcatagtt 79  Q
    ||||||||||||||  ||  |||||||||||||||||| ||||  |||||||||||||    
T  135318 ggtgtcgtgtccgacaccaggacacgcctaatctgaggcgtgttcgtgcttcatagtt 135261  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 79
Target Start/End: Original strand, 16812640 - 16812677
Alignment:
Q  42 gacacgcctaatctgaggagtgtatgtgcttcatagtt 79  Q
    |||||||||||||||||||||||  |||||||||||||    
T  16812640 gacacgcctaatctgaggagtgtccgtgcttcatagtt 16812677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 79
Target Start/End: Complemental strand, 22515866 - 22515825
Alignment:
Q  38 ccgagacacgcctaatctgaggagtgtatgtgcttcatagtt 79  Q
    ||||||||||||||||| |||||||||  |||||||||||||    
T  22515866 ccgagacacgcctaatccgaggagtgtccgtgcttcatagtt 22515825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 1486694 - 1486646
Alignment:
Q  27 cgtgtccgagtccgagacacgcctaatctgaggagtgtatgtgcttcat 75  Q
    |||||||||  ||| ||||||||||||| ||||||||| ||||||||||    
T  1486694 cgtgtccgacaccgggacacgcctaatccgaggagtgtctgtgcttcat 1486646  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 42 - 78
Target Start/End: Original strand, 2218312 - 2218348
Alignment:
Q  42 gacacgcctaatctgaggagtgtatgtgcttcatagt 78  Q
    |||||||||||||||||||||||  ||||||||||||    
T  2218312 gacacgcctaatctgaggagtgtccgtgcttcatagt 2218348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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