View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14924_low_7 (Length: 499)
Name: NF14924_low_7
Description: NF14924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14924_low_7 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 302; Significance: 1e-170; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 147 - 481
Target Start/End: Complemental strand, 40432614 - 40432284
Alignment:
| Q |
147 |
ataaatttatgcatgatagatagaaaaaccaaaaacatgtaacatcgtctcacattcatcacatcaaataaaatgtgataagttcaaagtttaattttgt |
246 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
40432614 |
ataaatttatgcatgataga----aaaaccaaaaacatgtaacaacgtctcacattcatcacatcaaataaaatgtggtaagttcaaagtttaattttgt |
40432519 |
T |
|
| Q |
247 |
tcatgcagctggtaaacaatgcagcaagtattttattactataagccaaagtcccacagccccaatgaatggcattccaacacacacagttgaaatatca |
346 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40432518 |
tcatgcagctggtaaacaatgcagcaagtattttattacgataagccaaagtcccacagccccaatgaatggcattccaacacacacagttgaaatatca |
40432419 |
T |
|
| Q |
347 |
aatacatgtttgagaggatgcaacatttttgacattcatgttgcttgtggcaagttcagctctgtacgtcttatcaaccctaatattttcaaacgcctca |
446 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40432418 |
aatacatgtttgagaggatgcaacatttttgacattcatgttgcttgtggcaagttcggctctgtacgtcttatcaaccctaatattttcaaacgcctca |
40432319 |
T |
|
| Q |
447 |
agtataatgattgtcttgttaatggtggtaagact |
481 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
40432318 |
agtataatgattgtcttgttaatggtggtaagact |
40432284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 17 - 141
Target Start/End: Complemental strand, 40433459 - 40433337
Alignment:
| Q |
17 |
taaggatgttgctgctttgggtccggattcgcagccagaagctaattacacactccttaatcatggaaaatatggcactcatcaaggtgattgtttttac |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40433459 |
taaggatgttgctgctttgggtccggattcgcagccagaagctaattacac--tccctaatcatggaaaatatggcactcatcaaggtgattgtttttac |
40433362 |
T |
|
| Q |
117 |
gaataaaactcttaacctttattaa |
141 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
40433361 |
gaataaaactcttaacctttattaa |
40433337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 309 - 469
Target Start/End: Complemental strand, 40436070 - 40435910
Alignment:
| Q |
309 |
caatgaatggcattccaacacacacagttgaaatatcaaatacatgtttgagaggatgcaacatttttgacattcatgttgcttgtggcaagttcagctc |
408 |
Q |
| |
|
|||| ||||||||| ||||| ||| |||||| ||| ||||||||||| ||||||||||||| || | | ||||||||||||||||||| || ||||| |
|
|
| T |
40436070 |
caattaatggcattacaacatacatagttgagatagcaaatacatgtgtgagaggatgcaaaatctctaacattcatgttgcttgtggtggtttaagctc |
40435971 |
T |
|
| Q |
409 |
tgtacgtcttatcaaccctaatattttcaaacgcctcaagtataatgattgtcttgttaat |
469 |
Q |
| |
|
|| || | ||||||| || | ||||||||||||||||| | ||||| |||||||||||| |
|
|
| T |
40435970 |
tgcacattttatcaaaccaacaattttcaaacgcctcaataaaaatgaatgtcttgttaat |
40435910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 469
Target Start/End: Complemental strand, 14473344 - 14473292
Alignment:
| Q |
417 |
ttatcaaccctaatattttcaaacgcctcaagtataatgattgtcttgttaat |
469 |
Q |
| |
|
|||||||||| | ||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
14473344 |
ttatcaacccaacaattttcaaacgcctcaataataaggattgtcttgttaat |
14473292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University