View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14924_low_8 (Length: 452)
Name: NF14924_low_8
Description: NF14924
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14924_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 279; Significance: 1e-156; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 154 - 436
Target Start/End: Complemental strand, 45667047 - 45666765
Alignment:
| Q |
154 |
cctggattttcttcaggtttattactaagtattcctgtgaatggtatctccttttccatgtataatgatgatccatgccgtgttttcttgcgataaacac |
253 |
Q |
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| T |
45667047 |
cctggattttcttcaggtttattactaagtattcctgtgaatggtatctccttttccatgtataatgatgatccacgccgtgttttcttgcgataaacac |
45666948 |
T |
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| Q |
254 |
atgatctgacattgttacaccatccacctccctgacagagtattttctctttagtatcactataacttttttacagcaaaaaagggaaagtagcttgacc |
353 |
Q |
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| T |
45666947 |
atgatctgacattgttacaccatccacctccctgacagagtattttctctttagtatcactataacttttttacagcaaaaaagggaaagtagcttgacc |
45666848 |
T |
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| Q |
354 |
aacacatgatgacagttagaaatcctaaaactttaattatttctaaatattttcagttaattatatatgccatggcatatatg |
436 |
Q |
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| T |
45666847 |
aacacatgatgacagttagaaatcctaaaactttaattatttctaaatattttcagttaattatatatgccatggcatatatg |
45666765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 13 - 104
Target Start/End: Complemental strand, 45667188 - 45667097
Alignment:
| Q |
13 |
catcacaataacgaagctttactctattccagttgaaaaaatctgcgaacacgagcaacaataacatgatcagagagactaatgcctacaac |
104 |
Q |
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| T |
45667188 |
catcacaataacgaagctttgctctattccagttgaaaaaatctgcgaacacgagcaacaataacatgatcagagagactaatgcctacaac |
45667097 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 38257829 - 38257767
Alignment:
| Q |
154 |
cctggattttcttcaggtttattactaagtattcctgtgaatggtatctccttttccatgtat |
216 |
Q |
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| T |
38257829 |
cctgggttttcttcaggtttattgctcaatattcctgtgaatggtatttgattttccatgtat |
38257767 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 13 - 58
Target Start/End: Original strand, 51344492 - 51344537
Alignment:
| Q |
13 |
catcacaataacgaagctttactctattccagttgaaaaaatctgc |
58 |
Q |
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| T |
51344492 |
catcacaataacgaatttttactctattccaattgaaaaaatctgc |
51344537 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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