View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14925_high_3 (Length: 396)
Name: NF14925_high_3
Description: NF14925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14925_high_3 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 380
Target Start/End: Original strand, 39735252 - 39735631
Alignment:
| Q |
1 |
actatattaataagactcaatgcatgtttgaatgattttgataaaatcacagtgatattaggaattttgttcaagttagtgtagctttcatcaaaatctt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39735252 |
actatattaataagactcaatgcatgtttgaatgattttggtaaaattacagtgatattagtaattttgttgaagttagtgtagctttcatcaaaatctt |
39735351 |
T |
|
| Q |
101 |
tagtaaattcaacaatggttgtacattttgattctattaaattcacttgcaattcaaacatgcacaaaaacaacctaggtgcaactcaagcaaaggataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39735352 |
tagtaaattcaacaatggttgtacattttgattctattaaattcacttacaattcaaacatgcacaaaaacaacctaggtgcaactcaagcaaaggataa |
39735451 |
T |
|
| Q |
201 |
tttttcataggatccaatccaaatgatatcaatagttggaccaatcattgtttgccacaatactcataaaaatagtaaaattaagcatttagcatgaaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||| |
|
|
| T |
39735452 |
tttttcataggatccaatccaaatgatatcaatagttggaccaatcattgtttgccacaatactcaaaaaaatagtaaaattaagcattaagcatgaaaa |
39735551 |
T |
|
| Q |
301 |
ttaaaccactacttttgccaacatagtttttcccgccacccattccaagattcctgccacgataatatcagtggagttat |
380 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39735552 |
ttaaaccactacttttgccaacatagtttttcccgcctcccattccaagattcctgccacgataatatcagtggagttat |
39735631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University