View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF14925_high_6 (Length: 243)
Name: NF14925_high_6
Description: NF14925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14925_high_6 |
 | |
|
| [»] chr7 (4 HSPs) |
| |
|
| [»] scaffold0867 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 13 - 243
Target Start/End: Complemental strand, 22063901 - 22063671
Alignment:
| Q |
13 |
attctgacaactgtgccgccaaggtatattgatcctttttgctctgttatctctcaaattatagagaattggttgtcttgaaaaaataccatttctggtc |
112 |
Q |
| |
|
|||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||| |
|
|
| T |
22063901 |
attctgacaattgtgccaccaaggtatattgatcctttttgctctgttatctctcaaattatagagaattggttctcttgaaaaaatataatttctggtc |
22063802 |
T |
|
| Q |
113 |
aataatagtgtatcgttcttctctaaaagatataatggcaacaaacaacggcacaagtcattaacattataatcactttggatattctgataactaattt |
212 |
Q |
| |
|
||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22063801 |
aataatagtgtatcgttcttctccaaaaggtataatggcaacaaacatcggcacaagtcattaacattataatcactttggatattctgataactaattt |
22063702 |
T |
|
| Q |
213 |
tgaataactgagtccaagactcttgaaatcc |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||| |
|
|
| T |
22063701 |
tgaataactgagtccaagactcttgaaatcc |
22063671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 31 - 239
Target Start/End: Complemental strand, 22100734 - 22100526
Alignment:
| Q |
31 |
ccaaggtatattgatcctttttgctctgttatctctcaaattatagagaattggttgtcttgaaaaaataccatttctggtcaataatagtgtatcgttc |
130 |
Q |
| |
|
|||||||||||||||| ||| | |||| ||||||||||||||||||||||||||| ||||| || | | ||||| |||||||||||||| |||||||| |
|
|
| T |
22100734 |
ccaaggtatattgatcatttgtcctctattatctctcaaattatagagaattggtcgtctttgaagcaaatcatttatggtcaataatagtttatcgttc |
22100635 |
T |
|
| Q |
131 |
ttctctaaaagatataatggcaacaaacaacggcacaagtcattaacattataatcactttggatattctgataactaattttgaataactgagtccaag |
230 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22100634 |
ttctccaaaaggcataatggcaacaaacaacggcacaagtcatcaaagtgataatcactttggatattctgataactaattttgaataactgagtccaag |
22100535 |
T |
|
| Q |
231 |
actcttgaa |
239 |
Q |
| |
|
||||||||| |
|
|
| T |
22100534 |
actcttgaa |
22100526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 31 - 239
Target Start/End: Complemental strand, 22070346 - 22070144
Alignment:
| Q |
31 |
ccaaggtatattgatcctttttgctctgttatctctcaaattatagagaattggttgtcttgaaaaaataccatttctggtcaataatagtgtatcgttc |
130 |
Q |
| |
|
||||||||||| ||||||||||||| | ||||||| ||||||||||||||||||| ||||| ||||| | ||||||| ||||||||||||||||| ||| |
|
|
| T |
22070346 |
ccaaggtatatggatcctttttgctatcttatctcgcaaattatagagaattggtcgtctttcaaaaaaatcatttcttgtcaataatagtgtatccttc |
22070247 |
T |
|
| Q |
131 |
ttctctaaaagatataatggcaacaaacaacggcacaagtcattaacattataatcactttggatattctgataactaattttgaataactgagtccaag |
230 |
Q |
| |
|
||||| ||||| ||||||||||||| ||| |||||||||| | |||| |||||| ||||| ||||||||||||||||||| ||||||||| |
|
|
| T |
22070246 |
ttctccaaaaggcataatggcaacaa------gcaaaagtcattaaagggacaatctatttggagattcttataactaattttgaataaccgagtccaag |
22070153 |
T |
|
| Q |
231 |
actcttgaa |
239 |
Q |
| |
|
||||||||| |
|
|
| T |
22070152 |
actcttgaa |
22070144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 31 - 239
Target Start/End: Complemental strand, 22081103 - 22080901
Alignment:
| Q |
31 |
ccaaggtatattgatcctttttgctctgttatctctcaaattatagagaattggttgtcttgaaaaaataccatttctggtcaataatagtgtatcgttc |
130 |
Q |
| |
|
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||| ||||| || || | ||||||| ||||||| |||||||| ||| |
|
|
| T |
22081103 |
ccaaggtatattgatcttttttgctctcttatctctcaaattatagagaattggtcgtctttcaacaaaatcatttctcatcaataacagtgtatccttc |
22081004 |
T |
|
| Q |
131 |
ttctctaaaagatataatggcaacaaacaacggcacaagtcattaacattataatcactttggatattctgataactaattttgaataactgagtccaag |
230 |
Q |
| |
|
||||| ||||| ||||||||||||| |||||||| ||||| || ||| |||||| ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
22081003 |
ttctccaaaaggcataatggcaacaa------gcacaagtaattaaagggatgatctatttggagattctgataactaattttgaataaccgagtccaag |
22080910 |
T |
|
| Q |
231 |
actcttgaa |
239 |
Q |
| |
|
||||||||| |
|
|
| T |
22080909 |
actcttgaa |
22080901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0867 (Bit Score: 129; Significance: 7e-67; HSPs: 1)
Name: scaffold0867
Description:
Target: scaffold0867; HSP #1
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 31 - 239
Target Start/End: Original strand, 4498 - 4706
Alignment:
| Q |
31 |
ccaaggtatattgatcctttttgctctgttatctctcaaattatagagaattggttgtcttgaaaaaataccatttctggtcaataatagtgtatcgttc |
130 |
Q |
| |
|
|||||||||||||||| ||| | |||| ||||||||||||||||||||||||||| ||||| || | | ||||| |||||||||||||| |||||||| |
|
|
| T |
4498 |
ccaaggtatattgatcatttgtcctctattatctctcaaattatagagaattggtcgtctttgaagcaaatcatttatggtcaataatagtttatcgttc |
4597 |
T |
|
| Q |
131 |
ttctctaaaagatataatggcaacaaacaacggcacaagtcattaacattataatcactttggatattctgataactaattttgaataactgagtccaag |
230 |
Q |
| |
|
||||| ||||| |||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4598 |
ttctccaaaaggcataatggcaacaaacaacggcacaagtcatcaaagtgataatcactttggatattctgataactaattttgaataactgagtccaag |
4697 |
T |
|
| Q |
231 |
actcttgaa |
239 |
Q |
| |
|
||||||||| |
|
|
| T |
4698 |
actcttgaa |
4706 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 181 - 239
Target Start/End: Original strand, 22051728 - 22051786
Alignment:
| Q |
181 |
ataatcactttggatattctgataactaattttgaataactgagtccaagactcttgaa |
239 |
Q |
| |
|
||||||| |||| | ||||||||||||||||||||| || ||||||||| | ||||||| |
|
|
| T |
22051728 |
ataatcaatttgaagattctgataactaattttgaaaaattgagtccaatattcttgaa |
22051786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 194 - 239
Target Start/End: Original strand, 25901271 - 25901316
Alignment:
| Q |
194 |
atattctgataactaattttgaataactgagtccaagactcttgaa |
239 |
Q |
| |
|
|||||||||||||||||||| || || ||| ||||||||||||||| |
|
|
| T |
25901271 |
atattctgataactaatttttaacaattgaatccaagactcttgaa |
25901316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 191 - 239
Target Start/End: Original strand, 10571265 - 10571313
Alignment:
| Q |
191 |
tggatattctgataactaattttgaataactgagtccaagactcttgaa |
239 |
Q |
| |
|
|||| ||||| |||||||||||| || |||||| ||||||||||||||| |
|
|
| T |
10571265 |
tggaaattctcataactaattttaaacaactgaatccaagactcttgaa |
10571313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University