View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14925_low_1 (Length: 656)

Name: NF14925_low_1
Description: NF14925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14925_low_1
NF14925_low_1
[»] chr4 (3 HSPs)
chr4 (17-436)||(8717526-8717947)
chr4 (225-303)||(15822568-15822647)
chr4 (18-55)||(10583890-10583927)
[»] chr1 (7 HSPs)
chr1 (212-476)||(19623971-19624233)
chr1 (193-301)||(12830333-12830443)
chr1 (22-243)||(14526791-14527017)
chr1 (186-311)||(25372947-25373074)
chr1 (18-55)||(15308363-15308400)
chr1 (18-55)||(24465826-24465863)
chr1 (391-453)||(25372806-25372868)
[»] chr5 (2 HSPs)
chr5 (211-424)||(18220393-18220606)
chr5 (211-245)||(27313787-27313821)
[»] chr2 (6 HSPs)
chr2 (211-437)||(15581910-15582136)
chr2 (111-282)||(5411991-5412162)
chr2 (286-432)||(5411824-5411968)
chr2 (18-51)||(15077304-15077337)
chr2 (18-55)||(14292294-14292331)
chr2 (18-51)||(15582904-15582937)
[»] chr6 (5 HSPs)
chr6 (214-301)||(33661113-33661201)
chr6 (211-331)||(28609521-28609643)
chr6 (20-92)||(28609328-28609399)
chr6 (197-241)||(14727506-14727551)
chr6 (364-453)||(28609675-28609764)
[»] chr7 (3 HSPs)
chr7 (196-245)||(23390949-23390999)
chr7 (385-444)||(9869036-9869095)
chr7 (265-301)||(7394817-7394853)
[»] chr3 (2 HSPs)
chr3 (212-289)||(12840196-12840274)
chr3 (18-51)||(12840438-12840471)
[»] chr8 (1 HSPs)
chr8 (391-447)||(11222447-11222503)


Alignment Details
Target: chr4 (Bit Score: 68; Significance: 5e-30; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 17 - 436
Target Start/End: Complemental strand, 8717947 - 8717526
Alignment:
Q  17 catctaagggacatgatttaaattatgtataggtgttattgctttagggatagtgggtaggtactatatttatgtacctatccatgcgtatgtaattgaa 116  Q
    ||||||||||||||| ||||||||||||| ||||||||| ||||||  ||||||||||| ||    |   | | || |||||||     |||| ||||||    
T  8717947 catctaagggacatggtttaaattatgtaaaggtgttatcgctttatagatagtgggtatgtcaagttcatgtataactatccacattcatgtcattgaa 8717848  T
Q  117 acaatcaactatttttccaccgactcgtcggaagtcagttggttcaatgaatctcccatctttatcaggagatgatgacgtatgttgatggaaag-tgga 215  Q
    ||||||  |||||||  |||| || | ||| || ||| ||||||||||||||||  |||| ||| |  ||||    |||||||| ||| ||| || || |    
T  8717847 acaatcggctattttggcaccaacgcatcgaaaatcaattggttcaatgaatcttgcatcgttaaccagagacagagacgtatgatgagggataggtgaa 8717748  T
Q  216 gttatatttgaagcataaaaagtatatgattgattagggggaaaa--tacgaggaatagctattgaaatttaatcccagcacaactttctatatcttgac 313  Q
    ||||||||||||||||||||||||||  || ||||| | | ||||  ||| || |||| || ||||||| |||||||||| |||| || | ||||||||     
T  8717747 gttatatttgaagcataaaaagtatacaatcgattaagagaaaaaaatacaagaaataactgttgaaatgtaatcccagcccaacgttttctatcttgat 8717648  T
Q  314 tagtttacttttaatcacgttatactaaacacttttataaaaccatgctaagaaattatatcgataagagcaaaattgagctaagcgcggtctctgtggt 413  Q
    ||||||||| ||| |||| | | |  ||||| |||||||||||| || | |||||||| ||||||| |||||||||  |||||||| | ||||| ||||     
T  8717647 tagtttactcttagtcacatcagaa-aaacatttttataaaaccttgtttagaaattacatcgatacgagcaaaatctagctaagcacagtctccgtggg 8717549  T
Q  414 tcgataatttagttttgataaaa 436  Q
    | ||||||||| |||||||||||    
T  8717548 ttgataatttatttttgataaaa 8717526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 225 - 303
Target Start/End: Original strand, 15822568 - 15822647
Alignment:
Q  225 gaagcataaaaagtatatgattgattagggggaaa-atacgaggaatagctattgaaatttaatcccagcacaactttct 303  Q
    ||||||| ||||||||| ||||||||| | ||||  |||||||||||| |||||||||| ||||| || |||||||||||    
T  15822568 gaagcatgaaaagtatacgattgattaagaggaatcatacgaggaataactattgaaatctaatctcaacacaactttct 15822647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 10583890 - 10583927
Alignment:
Q  18 atctaagggacatgatttaaattatgtataggtgttat 55  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  10583890 atctaaaggacatggtttaaattatgtataggtgttat 10583927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 8e-29; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 212 - 476
Target Start/End: Original strand, 19623971 - 19624233
Alignment:
Q  212 tggagttatatttgaagcataaaaagtatatgattgatt-agggggaaaatacgaggaatagctattgaaatttaatcccagcacaactttctatatctt 310  Q
    ||||| ||||||  || |||||||||||||||||  ||| ||  | |||||||||||||||  ||||||||||||||| ||| |||||||||| ||||||    
T  19623971 tggagctatattaaaaacataaaaagtatatgatcaattaagtagaaaaatacgaggaataattattgaaatttaatctcagtacaactttctctatctt 19624070  T
Q  311 gactagtttacttttaatcacgttatactaaacacttttataaaaccatgctaagaaattatatcgataagagcaaaattgagctaagcgcggtctctgt 410  Q
    ||||||||||||||||| ||| | | || ||||||||   ||||||| || | | ||||||| |  ||| | ||||||| |||||||| || |||| |||    
T  19624071 gactagtttacttttaaccacatca-acaaaacacttacctaaaaccttgtttataaattatgtaaatacgtgcaaaatcgagctaagtgcagtctatgt 19624169  T
Q  411 ggttcgataatttagttttgataaaaccaacataatatttacttgctgtgcgtggattcgaaaaat 476  Q
     ||||||||||||  ||||||||||||  |||||||| ||| ||| |||||| ||| |||||||||    
T  19624170 agttcgataatttttttttgataaaactgacataatactta-ttgttgtgcgagga-tcgaaaaat 19624233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 193 - 301
Target Start/End: Complemental strand, 12830443 - 12830333
Alignment:
Q  193 gacgtatgttgatggaaa-gtggagttatatttgaagcataaaaagtatatgattgattagggggaaa-atacgaggaatagctattgaaatttaatccc 290  Q
    |||||||||||| ||| | |||||||||||| ||||||||||||| ||||| || | ||| | ||||| ||||| ||||||  |||||||||| ||||||    
T  12830443 gacgtatgttgaaggatatgtggagttatatctgaagcataaaaaatatataatcggttaagaggaaatatacggggaataattattgaaattcaatccc 12830344  T
Q  291 agcacaacttt 301  Q
    | |||||||||    
T  12830343 aacacaacttt 12830333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 243
Target Start/End: Original strand, 14526791 - 14527017
Alignment:
Q  22 aagggacatgatttaaattatgtataggtgttattgctttagggatagtgggtaggtactatatttatgtac--ctatccat---gcgtatgtaattgaa 116  Q
    |||||||||| |||| ||||||||| |||||||| || |||| |||| | ||||||| ||||||| |||||   ||| | ||   | |||||| || |||    
T  14526791 aagggacatggtttatattatgtattggtgttatcgcgttagagataataggtaggt-ctatattcatgtataactagctatcttgtgtatgtcatcgaa 14526889  T
Q  117 acaatcaactatttttccaccgactcgtcggaagtcagttggttcaatgaatctcccatctttatcaggagatgatgacgtatgttgatgga-aagtgga 215  Q
    | |||||| |||||| |||| ||| | |||||||||||||| ||||||| ||||| |||| ||| |   |||||  |||||||| | ||| | | |||||    
T  14526890 agaatcaaatattttgccacggacgcatcggaagtcagttgattcaatggatctcgcatcgttaaccatagatggagacgtatgctaatgaataggtgga 14526989  T
Q  216 gttatatttgaagcataaaaagtatatg 243  Q
    ||||||| ||||||||||||| ||||||    
T  14526990 gttatatctgaagcataaaaactatatg 14527017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 186 - 311
Target Start/End: Complemental strand, 25373074 - 25372947
Alignment:
Q  186 agatgatgacgtatgttgatggaaag-tggagttatatttgaagcataaaaagtatatgattgattagggggaaaa-tacgaggaatagctattgaaatt 283  Q
    |||||| ||||| |||||| ||| || ||||||||||| ||||||||||||||||||  ||  |||  |  ||||  ||||| ||||| ||||||||||     
T  25373074 agatgaagacgtgtgttgagggataggtggagttatatctgaagcataaaaagtatacaatcaattcagatgaaacgtacgaagaataactattgaaatc 25372975  T
Q  284 taatcccagcacaactttctatatcttg 311  Q
    |||||||| || ||||||||||||||||    
T  25372974 taatcccatcataactttctatatcttg 25372947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 15308400 - 15308363
Alignment:
Q  18 atctaagggacatgatttaaattatgtataggtgttat 55  Q
    |||||||||||||| |||||||||||||||||||||||    
T  15308400 atctaagggacatggtttaaattatgtataggtgttat 15308363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 55
Target Start/End: Original strand, 24465826 - 24465863
Alignment:
Q  18 atctaagggacatgatttaaattatgtataggtgttat 55  Q
    |||||||||| |||||||||||||||||||||||||||    
T  24465826 atctaagggaaatgatttaaattatgtataggtgttat 24465863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 391 - 453
Target Start/End: Complemental strand, 25372868 - 25372806
Alignment:
Q  391 gagctaagcgcggtctctgtggttcgataatttagttttgataaaaccaacataatatttact 453  Q
    |||||||| | ||||||| | ||||||||||||| ||||||||||||  |||||||| |||||    
T  25372868 gagctaagtgaggtctctattgttcgataatttaattttgataaaacagacataatacttact 25372806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 211 - 424
Target Start/End: Complemental strand, 18220606 - 18220393
Alignment:
Q  211 gtggagttatatttgaagcataaaaagtatatgattgattagggggaaaa-tacgaggaatagctattgaaatttaatcccagcacaactttctatatct 309  Q
    |||||||||||||  || |||||||| | |||||| ||||| |  ||||| || ||||||||||||| ||||| |||||||| ||||||||||| ||||     
T  18220606 gtggagttatattcaaaacataaaaattctatgatcgattaagaagaaaaatatgaggaatagctatagaaatctaatcccaacacaactttctctatcc 18220507  T
Q  310 tgactagtttacttttaatcacgttatactaaacacttttataaaaccatgctaagaaattatatcgataagagcaaaattgagctaagcgcggtctctg 409  Q
    |||||| ||||||||| |||| | || || |||||||||||||||||   | | ||||||| | |||||| |||  |||||| ||||| | |||||| ||    
T  18220506 tgactaatttacttttgatcatg-taaacaaaacacttttataaaacttcgtttagaaattttgtcgatatgagtgaaattgtgctaaacacggtctatg 18220408  T
Q  410 tggttcgataattta 424  Q
    | |||||||||||||    
T  18220407 ttgttcgataattta 18220393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 211 - 245
Target Start/End: Original strand, 27313787 - 27313821
Alignment:
Q  211 gtggagttatatttgaagcataaaaagtatatgat 245  Q
    |||||||||||||||||||| ||||||||||||||    
T  27313787 gtggagttatatttgaagcaaaaaaagtatatgat 27313821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 211 - 437
Target Start/End: Complemental strand, 15582136 - 15581910
Alignment:
Q  211 gtggagttatatttgaagcataaaaagtatatgattgattagggg---gaaaatacgaggaatagctattgaaatttaatcccagcacaactttctatat 307  Q
    ||||||||| |||||||| |||||||||||| ||| ||||| | |    ||||||||| ||||| |||||||||||| | |||||||||||||||| |||    
T  15582136 gtggagttacatttgaagtataaaaagtatacgatcgattaagagaaaaaaaatacgacgaataactattgaaatttcaacccagcacaactttctctat 15582037  T
Q  308 cttgactagtttacttttaatcacgttatactaaacacttttataaaaccatgctaagaaattatatcgataagagcaaaattgagctaagcgcggtctc 407  Q
     |||||| |||||||||| ||||||  | || |||| ||||  ||||||| || | | ||||| | |||||| |||  |||| |||||||| || |||||    
T  15582036 tttgactcgtttacttttgatcacgcca-acaaaacgctttagtaaaaccttgtttataaattttgtcgataggag-gaaatcgagctaagtgc-gtctc 15581940  T
Q  408 tgtggttcgataatttagttttgataaaac 437  Q
    |||| ||  |||||||| ||||||||||||    
T  15581939 tgtgcttgaataatttatttttgataaaac 15581910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 111 - 282
Target Start/End: Complemental strand, 5412162 - 5411991
Alignment:
Q  111 attgaaacaatcaactatttttccaccgactcgtcggaagtcagttggttcaatgaatctcccatctttatcaggagatgatgacgtatgttgatgga-a 209  Q
    ||||||||||| ||||||||| |||| |||  || |||||||||||||||||||| ||||| |||| ||| |   |||||  ||| |||| ||| ||| |    
T  5412162 attgaaacaatgaactattttgccactgacgtgttggaagtcagttggttcaatggatctcgcatcgttaaccaaagatg--gacatatgctgagggata 5412065  T
Q  210 agtggagttatatttgaagcataaaaagtatatgattgatt-agggggaaaatacgaggaatagctattgaaat 282  Q
     | |||||||||| ||||| |||||||||| | |||||||| || || ||||||| ||||||| || |||||||    
T  5412064 ggcggagttatatctgaagaataaaaagtaaacgattgattaagaggaaaaataccaggaataactgttgaaat 5411991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 286 - 432
Target Start/End: Complemental strand, 5411968 - 5411824
Alignment:
Q  286 atcccagcacaactttctatatcttgactagtttacttttaatcacgttatactaaacacttttataaaaccatgctaagaaattatatcgataagagca 385  Q
    |||||||||||||||||| ||||||| ||||||||| ||| ||||| | | || ||||||||||| |||||| || | ||||||||| || | |   | |    
T  5411968 atcccagcacaactttctctatcttggctagtttacatttgatcacatca-acaaaacacttttacaaaacc-tgtttagaaattatgtcaaaacaggaa 5411871  T
Q  386 aaattgagctaagcgcggtctctgtggttcgataatttagttttgat 432  Q
    ||||||||||||| | |||||  ||||||||| ||| || |||||||    
T  5411870 aaattgagctaagtgtggtctaagtggttcgacaatatatttttgat 5411824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 15077337 - 15077304
Alignment:
Q  18 atctaagggacatgatttaaattatgtataggtg 51  Q
    ||||||||||||||||||||||||||||||||||    
T  15077337 atctaagggacatgatttaaattatgtataggtg 15077304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 14292331 - 14292294
Alignment:
Q  18 atctaagggacatgatttaaattatgtataggtgttat 55  Q
    |||||| ||||||| |||||||||||||||||||||||    
T  14292331 atctaaaggacatggtttaaattatgtataggtgttat 14292294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 15582937 - 15582904
Alignment:
Q  18 atctaagggacatgatttaaattatgtataggtg 51  Q
    |||||||||||||| |||||||||||||||||||    
T  15582937 atctaagggacatggtttaaattatgtataggtg 15582904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 214 - 301
Target Start/End: Complemental strand, 33661201 - 33661113
Alignment:
Q  214 gagttatatttgaagcataaaaagtatatgattgattagggggaaa-atacgaggaatagctattgaaatttaatcccagcacaacttt 301  Q
    |||||||||||||||||||| ||||||||||| ||||| | ||||| ||||||| ||||| ||||||||||  ||| | ||||||||||    
T  33661201 gagttatatttgaagcataagaagtatatgatcgattaagaggaaacatacgagtaatagttattgaaattcgatctcggcacaacttt 33661113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 331
Target Start/End: Original strand, 28609521 - 28609643
Alignment:
Q  211 gtggagttatatttgaagcataaaaagtatatgattgattaggggga-aaatacgaggaatagctattgaaatttaatcccagcacaactttctatatct 309  Q
    |||||||||| ||||||||||||||| ||||  || ||||| | ||| ||||||||| ||| | |||  |||| |||||||| ||||||||| | |||||    
T  28609521 gtggagttatctttgaagcataaaaattatacaatcgattaagaggagaaatacgagaaatggttatcaaaatctaatcccatcacaactttttgtatct 28609620  T
Q  310 t-gactagtttacttttaatcac 331  Q
    | ||||| ||||||||| |||||    
T  28609621 tggactattttacttttcatcac 28609643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 28609328 - 28609399
Alignment:
Q  20 ctaagggacatgatttaaattatgtataggtgttattgctttagggatagtgggtaggtactatatttatgta 92  Q
    |||||||||||| ||||||||||||||| ||||||| || |||| |||  |||||||||| |||||| |||||    
T  28609328 ctaagggacatggtttaaattatgtatatgtgttatcgcgttagagatgttgggtaggta-tatattcatgta 28609399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 14727506 - 14727551
Alignment:
Q  197 tatgttgatggaa-agtggagttatatttgaagcataaaaagtata 241  Q
    |||||||| |||| |||| |||||||||||||||||||||||||||    
T  14727506 tatgttgagggaagagtgaagttatatttgaagcataaaaagtata 14727551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 453
Target Start/End: Original strand, 28609675 - 28609764
Alignment:
Q  364 agaaattatatcgataagagcaaaattgagctaagcgcggtctctgtggttcgataatttagttttgataaaaccaacataatatttact 453  Q
    ||||||| | || ||| ||| ||||| ||| | || ||| ||||||||||| |||||||||  ||||||||||||| ||||||| |||||    
T  28609675 agaaattctgtcaatacgagtaaaatagagttgagagcgatctctgtggtttgataatttatatttgataaaaccagcataatacttact 28609764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 245
Target Start/End: Complemental strand, 23390999 - 23390949
Alignment:
Q  196 gtatgttgatgga-aagtggagttatatttgaagcataaaaagtatatgat 245  Q
    ||||||||| ||| |||||||||||||| ||||||||||||||||||||||    
T  23390999 gtatgttgagggataagtggagttatatctgaagcataaaaagtatatgat 23390949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 385 - 444
Target Start/End: Complemental strand, 9869095 - 9869036
Alignment:
Q  385 aaaattgagctaagcgcggtctctgtggttcgataatttagttttgataaaaccaacata 444  Q
    ||||| ||| |||||||||| | |||||||||| |||||| ||| |||||||||||||||    
T  9869095 aaaatcgaggtaagcgcggtttatgtggttcgacaatttattttagataaaaccaacata 9869036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 265 - 301
Target Start/End: Complemental strand, 7394853 - 7394817
Alignment:
Q  265 aggaatagctattgaaatttaatcccagcacaacttt 301  Q
    |||||||| |||||||||| |||||||||||||||||    
T  7394853 aggaatagttattgaaattcaatcccagcacaacttt 7394817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 212 - 289
Target Start/End: Complemental strand, 12840274 - 12840196
Alignment:
Q  212 tggagttatatttgaagcataaaaagtatatgattgattagggggaa-aatacgaggaatagctattgaaatttaatcc 289  Q
    ||||||||||||||| ||||||||||||||  |||||||| | ||||  ||  ||||||||| |||||||||| |||||    
T  12840274 tggagttatatttgaggcataaaaagtatacaattgattaagaggaagcatttgaggaatagttattgaaattcaatcc 12840196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 12840471 - 12840438
Alignment:
Q  18 atctaagggacatgatttaaattatgtataggtg 51  Q
    ||||||||||||||||||| ||||||||||||||    
T  12840471 atctaagggacatgatttagattatgtataggtg 12840438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 391 - 447
Target Start/End: Complemental strand, 11222503 - 11222447
Alignment:
Q  391 gagctaagcgcggtctctgtggttcgataatttagttttgataaaaccaacataata 447  Q
    |||||||| ||||  |||||| ||| |||||||| ||||||||||||| ||||||||    
T  11222503 gagctaagtgcggcgtctgtgattcaataatttatttttgataaaaccgacataata 11222447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University