View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14925_low_2 (Length: 608)
Name: NF14925_low_2
Description: NF14925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14925_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 75 - 515
Target Start/End: Complemental strand, 36463490 - 36463042
Alignment:
| Q |
75 |
aatcatgagcaagtaggcagatgattgttttaaattagcaagataaatatagagcattgtgatatatgcgagagatgatgat------taagattgtttt |
168 |
Q |
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| T |
36463490 |
aatcatgagcaagtaggcagatgattgttttaaattaggaagacaaatatagagcattgtgatatctgcgagagatgatgatgatgattaagattgtttt |
36463391 |
T |
|
| Q |
169 |
gttatggcaaggaggaattggtgtcatatgaatcttgaggcaacataatatgaagcatgaggcttgcataatgcgctataatagattgcaaaaaagtggt |
268 |
Q |
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||| ||||||||| |||||| ||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| |||| |
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| T |
36463390 |
gttgtggcaaggaagaattgttgtcatatgaatcttaaggcaatataatatgaagcttgaggcttgcataatgcgctataatagattgcaaaaaaatggt |
36463291 |
T |
|
| Q |
269 |
cgatgcatgatatta---attgtatacacctatgtcaattgaaaaggtgatagtatgtgcattaagatttaactaagggtttagtattttgtatttagaa |
365 |
Q |
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| T |
36463290 |
tgatgcatgatattattaattgtatacacctatgtcaattgaaaaggtgatagtatgtgcattaagatttaactaagggtttagtattg-gtatttagaa |
36463192 |
T |
|
| Q |
366 |
aaataaaatttaacagaagcatttattatataatactccatttctttctagtaaatgggagaactgctatttcacagattatagttgagattatttctag |
465 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||| |
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| T |
36463191 |
aaataaaatttaacagaagcatttattatataatactccatttctttctagtaaatgggagaactgctatttcatagattatagttgagattatttttag |
36463092 |
T |
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| Q |
466 |
tagcagtagcaagaagcttatgatttccaaacaggtttttaagcatgcca |
515 |
Q |
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| T |
36463091 |
tagcagtagcaagaagcttctgatttccaaacaggtttttaagcatgcca |
36463042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 30764272 - 30764337
Alignment:
| Q |
9 |
taaaaacataagtgaataagctaaagagaagaatagaagtaccttagt-aaccacaatgtgattca |
73 |
Q |
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| T |
30764272 |
taaaaacataagtgaatgagctaaagagaagaataaaagtaccttagtaaaccacaacgtgattca |
30764337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 40884672 - 40884627
Alignment:
| Q |
214 |
taatatgaagcatgaggcttgcataatgcgctataatagattgcaa |
259 |
Q |
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| T |
40884672 |
taatatgaagcatgaggcttgcataatgggctataataggttgcaa |
40884627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 214 - 259
Target Start/End: Complemental strand, 40910733 - 40910688
Alignment:
| Q |
214 |
taatatgaagcatgaggcttgcataatgcgctataatagattgcaa |
259 |
Q |
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| T |
40910733 |
taatatgaagcatgaggcttgcataatgggctataataggttgcaa |
40910688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 214 - 259
Target Start/End: Original strand, 40911230 - 40911275
Alignment:
| Q |
214 |
taatatgaagcatgaggcttgcataatgcgctataatagattgcaa |
259 |
Q |
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|||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
40911230 |
taatatgaagcatgaggcttgcataatgggctataataggttgcaa |
40911275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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