View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14925_low_4 (Length: 400)
Name: NF14925_low_4
Description: NF14925
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14925_low_4 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 17 - 400
Target Start/End: Complemental strand, 2272537 - 2272154
Alignment:
| Q |
17 |
attaaacagatagattcctcttggatttgtgtgaatccttgagcaaaactttctgatggatcatgaatcatgatctgtaaaatagccaaaccagagaagt |
116 |
Q |
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| T |
2272537 |
attaaacagatagattcctcttggatttgtgtgaatccttgagcaaaactttctgatggatcatgaatcatgatctgtaaaatagccaaaccagagaagt |
2272438 |
T |
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| Q |
117 |
ctcaattccaatcctttctgattattcacttgacaatacatattaaatgcacaagaagactcaaaccattacaagaaccatatcccaatgtagtacaatt |
216 |
Q |
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| T |
2272437 |
ctcaattccaatcctttctgattattcacttgacaatacatattaaatgcacaagaagactcaaaccattacaagaaccatatcccaatgtagtacaatt |
2272338 |
T |
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| Q |
217 |
tgataaactacaagcatagtcaacagcaccagccaaatcaggatgcaaaatacaccactgtatttgaaaacagttgacataaatacaatgttagtgttat |
316 |
Q |
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| T |
2272337 |
tgataaactacaagcatagtcaacagcaccagccaaatcaggatgcaaaatacaccactgtatttgaaaacagttgacataaatacaatgttagtgttat |
2272238 |
T |
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| Q |
317 |
aactgtgagaatttaagaagcatatatagtctacatttttcgccaaatcagtacaaataaacatagtaataacaacctcctaat |
400 |
Q |
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| T |
2272237 |
aactgtgagaatttaagaagcatatatagtctacatttttagccaaatcagtacaaagaaacatagtaataacaacctcctaat |
2272154 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 98 - 254
Target Start/End: Complemental strand, 46353947 - 46353776
Alignment:
| Q |
98 |
atagccaaaccagagaagtctcaattccaatcctttctgattattcacttgacaatacatattaaatgcacaag-------------aagactcaaacca |
184 |
Q |
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| T |
46353947 |
atagccaaacctgaaaaatcacaatcccaatcctt-ctgattatgcacttgataatacatattaaatgcataagaagcattcccttcaagactcaaacca |
46353849 |
T |
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| Q |
185 |
ttacaagaa---ccatatcccaatgtagtacaatttgataaactacaagcatagtcaacagcaccagccaaat |
254 |
Q |
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| T |
46353848 |
ttacaagaagatccatatcctaatgcagtacaatctgataagctacatgcataatcaatactaccagccaaat |
46353776 |
T |
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