View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF14926_low_1 (Length: 678)

Name: NF14926_low_1
Description: NF14926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF14926_low_1
NF14926_low_1
[»] chr2 (20 HSPs)
chr2 (18-668)||(37091935-37092570)
chr2 (364-427)||(17981594-17981657)
chr2 (356-437)||(5394485-5394566)
chr2 (356-437)||(37179972-37180053)
chr2 (356-420)||(25423833-25423897)
chr2 (356-429)||(31579208-31579281)
chr2 (364-429)||(42745095-42745160)
chr2 (364-437)||(14551571-14551644)
chr2 (354-416)||(7020352-7020414)
chr2 (356-418)||(9438126-9438188)
chr2 (362-437)||(17655756-17655833)
chr2 (356-427)||(18105344-18105414)
chr2 (354-420)||(13835445-13835511)
chr2 (354-396)||(14121894-14121936)
chr2 (365-420)||(1682120-1682175)
chr2 (355-417)||(3562181-3562243)
chr2 (370-420)||(14412824-14412874)
chr2 (359-405)||(39401072-39401118)
chr2 (367-420)||(38372982-38373035)
chr2 (362-418)||(39562260-39562316)
[»] chr4 (27 HSPs)
chr4 (469-640)||(17346262-17346433)
chr4 (469-640)||(17137361-17137529)
chr4 (356-437)||(31307037-31307118)
chr4 (168-301)||(17345507-17345641)
chr4 (168-299)||(17138878-17139010)
chr4 (354-437)||(9012357-9012440)
chr4 (355-437)||(35972431-35972513)
chr4 (356-429)||(51626285-51626358)
chr4 (356-420)||(38766178-38766242)
chr4 (356-437)||(46016238-46016319)
chr4 (18-85)||(17139161-17139228)
chr4 (18-85)||(17345271-17345338)
chr4 (354-437)||(33529344-33529427)
chr4 (354-420)||(14854692-14854758)
chr4 (356-437)||(46250526-46250607)
chr4 (354-420)||(15133462-15133528)
chr4 (357-427)||(35334079-35334149)
chr4 (362-437)||(45994617-45994692)
chr4 (358-413)||(13948587-13948642)
chr4 (355-405)||(13686690-13686740)
chr4 (377-427)||(32005127-32005177)
chr4 (355-430)||(18841573-18841649)
chr4 (356-437)||(31308386-31308467)
chr4 (355-404)||(36990098-36990147)
chr4 (355-411)||(25768685-25768741)
chr4 (355-399)||(51853784-51853828)
chr4 (483-559)||(55295338-55295414)
[»] chr8 (15 HSPs)
chr8 (359-437)||(2744025-2744103)
chr8 (356-437)||(4124995-4125076)
chr8 (356-437)||(7839224-7839305)
chr8 (354-437)||(19715696-19715780)
chr8 (356-437)||(13468716-13468797)
chr8 (356-437)||(30936093-30936174)
chr8 (370-431)||(39086855-39086916)
chr8 (362-416)||(12958077-12958131)
chr8 (362-437)||(8521793-8521867)
chr8 (356-397)||(30056012-30056053)
chr8 (355-420)||(40320184-40320249)
chr8 (358-429)||(13005657-13005728)
chr8 (362-405)||(36994503-36994546)
chr8 (354-401)||(24988586-24988633)
chr8 (356-397)||(15683018-15683059)
[»] chr7 (25 HSPs)
chr7 (356-437)||(29059894-29059975)
chr7 (356-437)||(31492192-31492273)
chr7 (362-427)||(21747021-21747086)
chr7 (364-444)||(37339697-37339777)
chr7 (364-437)||(28665187-28665260)
chr7 (354-437)||(19477223-19477303)
chr7 (354-437)||(11486715-11486798)
chr7 (362-436)||(31776513-31776587)
chr7 (359-436)||(45778956-45779033)
chr7 (354-430)||(20207584-20207660)
chr7 (354-437)||(33299166-33299249)
chr7 (362-427)||(35707941-35708006)
chr7 (356-437)||(28537479-28537556)
chr7 (356-394)||(14545032-14545070)
chr7 (354-420)||(24172296-24172362)
chr7 (355-405)||(29428795-29428845)
chr7 (354-437)||(32470003-32470088)
chr7 (362-439)||(25421210-25421286)
chr7 (375-428)||(36821060-36821113)
chr7 (361-429)||(3231313-3231381)
chr7 (359-417)||(28828756-28828814)
chr7 (362-420)||(42741797-42741854)
chr7 (363-437)||(1424669-1424745)
chr7 (380-437)||(49118220-49118277)
chr7 (356-392)||(13254117-13254153)
[»] chr5 (10 HSPs)
chr5 (356-437)||(5123469-5123550)
chr5 (356-437)||(10592016-10592097)
chr5 (364-437)||(22187969-22188042)
chr5 (362-437)||(31113429-31113504)
chr5 (354-437)||(25983752-25983835)
chr5 (356-427)||(30784967-30785038)
chr5 (359-437)||(29553631-29553709)
chr5 (355-404)||(36212984-36213033)
chr5 (355-433)||(373739-373817)
chr5 (495-542)||(6796801-6796848)
[»] chr3 (21 HSPs)
chr3 (364-437)||(8757441-8757514)
chr3 (356-437)||(20861337-20861418)
chr3 (356-437)||(27763810-27763891)
chr3 (356-437)||(30995936-30996017)
chr3 (354-437)||(25224786-25224869)
chr3 (358-437)||(1642697-1642776)
chr3 (354-437)||(48204282-48204365)
chr3 (362-437)||(55123192-55123267)
chr3 (354-437)||(38331215-38331299)
chr3 (354-436)||(22288322-22288404)
chr3 (375-431)||(40318426-40318482)
chr3 (355-437)||(44941236-44941317)
chr3 (355-398)||(15446084-15446127)
chr3 (389-436)||(22288643-22288690)
chr3 (354-437)||(40294699-40294782)
chr3 (355-437)||(46725513-46725594)
chr3 (355-396)||(15283159-15283200)
chr3 (363-420)||(39950308-39950365)
chr3 (362-437)||(25739182-25739258)
chr3 (354-420)||(48210948-48211014)
chr3 (377-437)||(43621282-43621342)
[»] scaffold0182 (1 HSPs)
scaffold0182 (356-438)||(26420-26502)
[»] chr1 (20 HSPs)
chr1 (363-437)||(16756178-16756252)
chr1 (356-429)||(42297421-42297494)
chr1 (355-439)||(15642543-15642628)
chr1 (356-437)||(36806700-36806781)
chr1 (356-437)||(49071666-49071747)
chr1 (356-425)||(28724761-28724830)
chr1 (357-420)||(9780977-9781040)
chr1 (372-430)||(18428120-18428178)
chr1 (471-636)||(8571806-8571971)
chr1 (354-431)||(46864178-46864255)
chr1 (362-437)||(22022215-22022290)
chr1 (354-437)||(44913196-44913279)
chr1 (356-397)||(12035639-12035680)
chr1 (381-421)||(7242794-7242834)
chr1 (369-429)||(32534184-32534244)
chr1 (363-402)||(6607700-6607739)
chr1 (362-405)||(10367599-10367642)
chr1 (378-409)||(21774671-21774702)
chr1 (354-420)||(10750684-10750750)
chr1 (364-437)||(39547335-39547408)
[»] chr6 (12 HSPs)
chr6 (357-437)||(12836868-12836948)
chr6 (356-434)||(12411237-12411315)
chr6 (363-437)||(21910301-21910374)
chr6 (359-420)||(28099335-28099396)
chr6 (358-418)||(9536858-9536918)
chr6 (355-407)||(21028843-21028895)
chr6 (355-407)||(21028980-21029032)
chr6 (356-394)||(423744-423782)
chr6 (356-418)||(31412211-31412273)
chr6 (364-419)||(17177235-17177290)
chr6 (355-437)||(278479-278561)
chr6 (355-405)||(28933226-28933276)
[»] scaffold0013 (1 HSPs)
scaffold0013 (363-437)||(29123-29197)
[»] scaffold0009 (1 HSPs)
scaffold0009 (354-420)||(27213-27279)
[»] scaffold0071 (1 HSPs)
scaffold0071 (355-398)||(16065-16108)


Alignment Details
Target: chr2 (Bit Score: 502; Significance: 0; HSPs: 20)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 502; E-Value: 0
Query Start/End: Original strand, 18 - 668
Target Start/End: Complemental strand, 37092570 - 37091935
Alignment:
Q  18 ccttataggttctatacttggaatgttacctatggagatatttatcctcttggagttaaacaacaggttatatttgtgctctaaattatttttctttgtg 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  37092570 ccttataggttctatacttggaatgttacctatggagatatttatcctcttggagttaaacaacaggttatatttgtgttctaaattatttttctttgtg 37092471  T
Q  118 attcttattttgtaaaaatgtgaannnnnnnnnnnnnnnnnnnnnnnnnttggtttatgaaatggcaggggatattgataaatggacagtttccaggacc 217  Q
    ||||||||||| ||||||||||||                         |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37092470 attcttattttttaaaaatgtgaaatatatagtgaatatatatatatatttggtttatgaaatggcaggggatattgataaatggacagtttccaggacc 37092371  T
Q  218 acagattgaatctgtcactaatgataacttgattgttagtgttttcaatagcttggatcaacctttccttatttcttggttagtttactctctcttctaa 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37092370 acagattgaatctgtcactaatgataacttgattgttagtgttttcaatagcttggatcaacctttccttatttcttggttagtttactctctcttctaa 37092271  T
Q  318 ctttcttgtttagnnnnnnnnnnnnnaaagtatcatcttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggat 417  Q
    ||||||||||||               ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  37092270 ctttcttgttta---------------aagtatcatcttgccgtccatttgggtcccacagtgctcgagggattagtctccgcagttgtgcacggaggat 37092186  T
Q  418 accgggtttacaccaaaaaagactaatgttaacagtatgtgatgattcttaataggaatggagtgcagcagaggaggaattcatggcaagatggagtata 517  Q
    ||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37092185 acccggtttacaccaaaaaagactaatgttaagagtatgtgatgattcttaataggaatggagtgcagcagaggaggaattcatggcaagatggagtata 37092086  T
Q  518 tggaacaaactgtccaattccaccagggcagaactttacttatgttcttcaagtaaaagatcagattggtagctacttttactttccctcccttgcatta 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37092085 tggaacaaactgtccaattccaccagggcagaactttacttatgttcttcaagtaaaagatcagattggtagctacttttactttccctcccttgcatta 37091986  T
Q  618 cacaaggccgcaggtggttatggtggcatcaaaattaacagccgccctatg 668  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37091985 cacaaggccgcaggtggttatggtggcatcaaaattaacagccgccctatg 37091935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 364 - 427
Target Start/End: Original strand, 17981594 - 17981657
Alignment:
Q  364 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 427  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||||||||||||| ||||||    
T  17981594 atttgggtcccacaatgctcgagagattagtctccgcagttgcgcgcggaggatacccggttta 17981657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 356 - 437
Target Start/End: Original strand, 5394485 - 5394566
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||| ||||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||  | |||||||| |||||    
T  5394485 tgccgcccatttgggtcccacaatgctcgtgggattagtctccgcagttgcacgcggaggatactcgatttacacccaaaaa 5394566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 356 - 437
Target Start/End: Complemental strand, 37180053 - 37179972
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||| ||||||| |||||||||| |||||||||||||||| |||| ||| |||||||||||||| | ||||||||||||||    
T  37180053 tgccgcccatttgagtcccacaatactcgagggattagtctacgcacttgcgcgcggaggatacccgatttacaccaaaaaa 37179972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 356 - 420
Target Start/End: Original strand, 25423833 - 25423897
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 420  Q
    ||||| |||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  25423833 tgccgcccatttgggtcccacaatgctcgagggattagtctcagcagttgcgcgtggaggatacc 25423897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 356 - 429
Target Start/End: Complemental strand, 31579281 - 31579208
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 429  Q
    ||||| ||||||  |||||||||||||||||| |||||| |||||||||| |||||||||||||| ||||||||    
T  31579281 tgccgcccatttaagtcccacaatgctcgaggaattagtttccgcagttgcgcgcggaggatacccggtttaca 31579208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 364 - 429
Target Start/End: Complemental strand, 42745160 - 42745095
Alignment:
Q  364 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 429  Q
    |||||||| |||||||| |||||||||||||||| ||||||| |||||||||||||| ||||||||    
T  42745160 atttgggttccacaatggtcgagggattagtctcagcagttgcgcgcggaggatacccggtttaca 42745095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 364 - 437
Target Start/End: Original strand, 14551571 - 14551644
Alignment:
Q  364 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    |||||||||| |||||||||||||||||| |||||||||||| |||| ||||||||  | |||| |||||||||    
T  14551571 atttgggtcctacaatgctcgagggattaatctccgcagttgcgcgcagaggatactcgatttataccaaaaaa 14551644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 354 - 416
Target Start/End: Complemental strand, 7020414 - 7020352
Alignment:
Q  354 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggagga 416  Q
    ||||||| |||||||||||| |||||||||||| ||||||||||  |||||| ||||||||||    
T  7020414 cttgccgcccatttgggtcctacaatgctcgagtgattagtctcgacagttgcgcgcggagga 7020352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 356 - 418
Target Start/End: Complemental strand, 9438188 - 9438126
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggata 418  Q
    ||||| ||||||| ||||||||||||| ||||||||||| ||| |||||| ||||||||||||    
T  9438188 tgccgcccatttgtgtcccacaatgcttgagggattagtttccacagttgcgcgcggaggata 9438126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 362 - 437
Target Start/End: Original strand, 17655756 - 17655833
Alignment:
Q  362 ccatttgggtcccacaatgctcgagggattagtctccgcagtt--gtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    |||||||| | |||||| |||||||||||||||||||||||||  ||||| |||||||||| | ||||| ||||||||    
T  17655756 ccatttggattccacaaggctcgagggattagtctccgcagttgcgtgcgaggaggatacctgatttacgccaaaaaa 17655833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 356 - 427
Target Start/End: Complemental strand, 18105414 - 18105344
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 427  Q
    ||||| ||||||| ||| |||||| |||||||||||||||| |||||||| |||||||||||| | ||||||    
T  18105414 tgccgcccatttgagtctcacaatactcgagggattagtct-cgcagttgcgcgcggaggatatccggttta 18105344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 354 - 420
Target Start/End: Complemental strand, 13835511 - 13835445
Alignment:
Q  354 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 420  Q
    |||||||| |||||| ||||||||||| | ||||||||||| || ||||||||| | ||||||||||    
T  13835511 cttgccgttcatttgagtcccacaatgtttgagggattagtttctgcagttgtgtgtggaggatacc 13835445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 354 - 396
Target Start/End: Complemental strand, 14121936 - 14121894
Alignment:
Q  354 cttgccgtccatttgggtcccacaatgctcgagggattagtct 396  Q
    ||||||| ||||||| |||||||||||||||||||||||||||    
T  14121936 cttgccgcccatttgagtcccacaatgctcgagggattagtct 14121894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 365 - 420
Target Start/End: Original strand, 1682120 - 1682175
Alignment:
Q  365 tttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 420  Q
    ||||||||| | ||| ||||||||||||||||||||||||| || | |||||||||    
T  1682120 tttgggtcctataatactcgagggattagtctccgcagttgcgcacagaggatacc 1682175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 355 - 417
Target Start/End: Complemental strand, 3562243 - 3562181
Alignment:
Q  355 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggat 417  Q
    |||||| ||||||||||||||||| ||| |||| | |||||| |||||||| |||||| ||||    
T  3562243 ttgccgcccatttgggtcccacaaagcttgaggtactagtcttcgcagttgcgcgcggcggat 3562181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 370 - 420
Target Start/End: Original strand, 14412824 - 14412874
Alignment:
Q  370 gtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 420  Q
    |||||| ||||||| ||| ||||||||| ||||||||||||| ||||||||    
T  14412824 gtcccataatgctcaaggaattagtctctgcagttgtgcgcgaaggatacc 14412874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 359 - 405
Target Start/End: Complemental strand, 39401118 - 39401072
Alignment:
Q  359 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttg 405  Q
    ||||||||| |||||||||||||||| | |||||| |||||||||||    
T  39401118 cgtccatttaggtcccacaatgctcgtgagattagactccgcagttg 39401072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 367 - 420
Target Start/End: Complemental strand, 38373035 - 38372982
Alignment:
Q  367 tgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 420  Q
    ||||||||||||||||| ||| ||||||||   |||||| ||||||||||||||    
T  38373035 tgggtcccacaatgctcaaggaattagtctatacagttgcgcgcggaggatacc 38372982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 362 - 418
Target Start/End: Original strand, 39562260 - 39562316
Alignment:
Q  362 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggata 418  Q
    |||||||  |||||||||  |||| |||||| ||||||||||||||| |||||||||    
T  39562260 ccatttgaatcccacaatattcgaaggattaatctccgcagttgtgctcggaggata 39562316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 1e-46; HSPs: 27)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 469 - 640
Target Start/End: Original strand, 17346262 - 17346433
Alignment:
Q  469 ataggaatggagtgcagcagaggaggaattcatggcaagatggagtatatggaacaaactgtccaattccaccagggcagaactttacttatgttcttca 568  Q
    |||||||||||||||  |||||||| || |||||||| |||||||| ||||| ||||| ||||||||  | ||||| |||||||| |||||| |||||||    
T  17346262 ataggaatggagtgctacagaggagaaactcatggcaggatggagtgtatggtacaaattgtccaatctctccaggacagaacttcacttatattcttca 17346361  T
Q  569 agtaaaagatcagattggtagctacttttactttccctcccttgcattacacaaggccgcaggtggttatgg 640  Q
    |||||||||||||||||||||||| || |||||||| ||||||||||| |||||||| ||||||||||||||    
T  17346362 agtaaaagatcagattggtagctatttctactttccttcccttgcatttcacaaggcagcaggtggttatgg 17346433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 469 - 640
Target Start/End: Complemental strand, 17137529 - 17137361
Alignment:
Q  469 ataggaatggagtgcagcagaggaggaattcatggcaagatggagtatatggaacaaactgtccaattccaccagggcagaactttacttatgttcttca 568  Q
    ||||||||||||||| ||||||||| || ||||||||||||||||| ||||| ||||| ||||||||  | |||||  |||||   |||||| |||||||    
T  17137529 ataggaatggagtgctgcagaggagaaactcatggcaagatggagtgtatggtacaaattgtccaatctctccaggaaagaac---acttatattcttca 17137433  T
Q  569 agtaaaagatcagattggtagctacttttactttccctcccttgcattacacaaggccgcaggtggttatgg 640  Q
    |||||||||||||||||| ||||| || |||||||| ||||||||||| |||||||| ||||| ||||||||    
T  17137432 agtaaaagatcagattggcagctatttctactttccttcccttgcatttcacaaggcagcaggaggttatgg 17137361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 356 - 437
Target Start/End: Complemental strand, 31307118 - 31307037
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  31307118 tgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaa 31307037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 168 - 301
Target Start/End: Original strand, 17345507 - 17345641
Alignment:
Q  168 tggtttatgaaatg-gcaggggatattgataaatggacagtttccaggaccacagattgaatctgtcactaatgataacttgattgttagtgttttcaat 266  Q
    |||||| ||||||| ||||||||| |||||||||||||| ||||| || ||||||||||| || || ||||||||||| |||||| | | |||||| |||    
T  17345507 tggtttgtgaaatgtgcaggggattttgataaatggacaatttcctgggccacagattgagtcagtgactaatgataatttgattatcaatgtttttaat 17345606  T
Q  267 agcttggatcaacctttccttatttcttggttagt 301  Q
    ||||||||| |||||||||| ||||||||||||||    
T  17345607 agcttggatgaacctttcctcatttcttggttagt 17345641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 168 - 299
Target Start/End: Complemental strand, 17139010 - 17138878
Alignment:
Q  168 tggtttatgaaatg-gcaggggatattgataaatggacagtttccaggaccacagattgaatctgtcactaatgataacttgattgttagtgttttcaat 266  Q
    |||||| ||||||| ||||||||| |||||||||||| | |||||||| ||||||||||| || || ||||||||||| |||||| | | |||||||||     
T  17139010 tggtttgtgaaatgtgcaggggattttgataaatggaaaatttccagggccacagattgagtcagtgactaatgataatttgattatcaatgttttcaac 17138911  T
Q  267 agcttggatcaacctttccttatttcttggtta 299  Q
    ||||||||| |||||||||| ||||||||||||    
T  17138910 agcttggatgaacctttcctcatttcttggtta 17138878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 354 - 437
Target Start/End: Original strand, 9012357 - 9012440
Alignment:
Q  354 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||||| ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |||| ||| |||||    
T  9012357 cttgccgcccacttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgatttatacccaaaaa 9012440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 355 - 437
Target Start/End: Original strand, 35972431 - 35972513
Alignment:
Q  355 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    |||||| ||||||||||||||| ||| |||||||||||||||||||||||| | ||||||||||||  |||||||||||||||    
T  35972431 ttgccgcccatttgggtcccactatgttcgagggattagtctccgcagttgcgtgcggaggatacctagtttacaccaaaaaa 35972513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 356 - 429
Target Start/End: Complemental strand, 51626358 - 51626285
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 429  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||| | ||||||    
T  51626358 tgccgtccatttgggtcccacagtgctcgagagattagtctccgcagttgcgcgcggaggatacccgatttaca 51626285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 356 - 420
Target Start/End: Original strand, 38766178 - 38766242
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 420  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  38766178 tgccgcccatttgggtctcacaatgctcgagggattagtctccgcagttgcgcgcggaggatacc 38766242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 356 - 437
Target Start/End: Original strand, 46016238 - 46016319
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||| |||||||||||||||||||||||| | ||||||||||| ||||| ||| |||||||||| | ||||||||||||||    
T  46016238 tgccgcccatttgggtcccacaatgctcgaagaattagtctccgtagttgcgcgtggaggatacccgatttacaccaaaaaa 46016319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 18 - 85
Target Start/End: Complemental strand, 17139228 - 17139161
Alignment:
Q  18 ccttataggttctatacttggaatgttacctatggagatatttatcctcttggagttaaacaacaggt 85  Q
    ||||||||||| |||| |||||||||||| ||||| ||||||||||| ||||||||||||||||||||    
T  17139228 ccttataggttttataattggaatgttacatatggtgatatttatccacttggagttaaacaacaggt 17139161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 18 - 85
Target Start/End: Original strand, 17345271 - 17345338
Alignment:
Q  18 ccttataggttctatacttggaatgttacctatggagatatttatcctcttggagttaaacaacaggt 85  Q
    ||||||||||| || | |||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  17345271 ccttataggttttacaattggaatgttacatatggagatatttatccacttggagttaaacaacaggt 17345338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 354 - 437
Target Start/End: Original strand, 33529344 - 33529427
Alignment:
Q  354 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||||| |||||||||||||||||| || |||||||||||||||||||||| || ||||||||||  | |||||||| |||||    
T  33529344 cttgccgcccatttgggtcccacaatactggagggattagtctccgcagttgcgcacggaggatacttgatttacacccaaaaa 33529427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 354 - 420
Target Start/End: Original strand, 14854692 - 14854758
Alignment:
Q  354 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 420  Q
    ||||||| |||||||||||| ||||| ||||||||||||||||| ||||||| ||||||||||||||    
T  14854692 cttgccgcccatttgggtccaacaattctcgagggattagtctctgcagttgcgcgcggaggatacc 14854758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 356 - 437
Target Start/End: Complemental strand, 46250607 - 46250526
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||| ||||||||||||||| |||||||| | |||||||||||| |||||||| |||||||| | || |||||||||||||    
T  46250607 tgccgcccatttgggtcccacgatgctcgaagaattagtctccgcggttgtgcgtggaggataaccggattacaccaaaaaa 46250526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 354 - 420
Target Start/End: Original strand, 15133462 - 15133528
Alignment:
Q  354 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 420  Q
    |||| ||||| |||||||||||||||| | ||| |||||||||||||||||| ||||||||||||||    
T  15133462 cttgtcgtccgtttgggtcccacaatgtttgagagattagtctccgcagttgcgcgcggaggatacc 15133528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 357 - 427
Target Start/End: Complemental strand, 35334149 - 35334079
Alignment:
Q  357 gccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 427  Q
    |||| |||||||||||||||||| ||||||||||||||||||||||||| ||| | |||||| | ||||||    
T  35334149 gccgcccatttgggtcccacaatactcgagggattagtctccgcagttgcgcgtgaaggatatccggttta 35334079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 362 - 437
Target Start/End: Original strand, 45994617 - 45994692
Alignment:
Q  362 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||||||||| ||||||||||||| ||||||||||||||||||  |||  ||||||||  ||||| |||||||||    
T  45994617 ccatttgggtctcacaatgctcgagagattagtctccgcagttgcacgccaaggatacccagtttataccaaaaaa 45994692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 358 - 413
Target Start/End: Complemental strand, 13948642 - 13948587
Alignment:
Q  358 ccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcgga 413  Q
    |||||||||||  || |||||||||||||||||||||||| ||||||| |||||||    
T  13948642 ccgtccatttgaatctcacaatgctcgagggattagtctctgcagttgcgcgcgga 13948587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 355 - 405
Target Start/End: Original strand, 13686690 - 13686740
Alignment:
Q  355 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttg 405  Q
    |||||||||||||||||| ||||| ||||||| ||||||||||| ||||||    
T  13686690 ttgccgtccatttgggtctcacaaggctcgagagattagtctccacagttg 13686740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 377 - 427
Target Start/End: Complemental strand, 32005177 - 32005127
Alignment:
Q  377 aatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 427  Q
    |||||||||| |||||||||||||| || ||||||||||||||| ||||||    
T  32005177 aatgctcgagagattagtctccgcaattatgcgcggaggatacccggttta 32005127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 355 - 430
Target Start/End: Original strand, 18841573 - 18841649
Alignment:
Q  355 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgc-agttgtgcgcggaggataccgggtttacac 430  Q
    |||||| | |||||| ||| |||| |||| |||||||||||||||| ||||| || ||||||||||| |||||||||    
T  18841573 ttgccgccaatttggatcctacaaggctcaagggattagtctccgcaagttgcgcacggaggatacctggtttacac 18841649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 437
Target Start/End: Original strand, 31308386 - 31308467
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||||| |||| |||||||||||| | ||||||||||||  | |||||||| |||||| |||||   |||||| |||||||    
T  31308386 tgccgtctatttaggtcccacaatgtttgagggattagtcctctcagttgtgtgcggagaatacccaatttacatcaaaaaa 31308467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 355 - 404
Target Start/End: Complemental strand, 36990147 - 36990098
Alignment:
Q  355 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagtt 404  Q
    ||||||||||||||  ||||||||||||||||| |||||| | |||||||    
T  36990147 ttgccgtccatttgaatcccacaatgctcgaggaattagtattcgcagtt 36990098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 355 - 411
Target Start/End: Complemental strand, 25768741 - 25768685
Alignment:
Q  355 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcg 411  Q
    |||||| |||||||||| |||||||||| || |||||||||||| || ||| |||||    
T  25768741 ttgccgcccatttgggtgccacaatgcttgaaggattagtctccacaattgcgcgcg 25768685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 355 - 399
Target Start/End: Original strand, 51853784 - 51853828
Alignment:
Q  355 ttgccgtccatttgggtcccacaatgctcgagggattagtctccg 399  Q
    |||| |||||||| |||| |||||| |||||||||||||||||||    
T  51853784 ttgcggtccattttggtctcacaatactcgagggattagtctccg 51853828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 483 - 559
Target Start/End: Original strand, 55295338 - 55295414
Alignment:
Q  483 cagcagaggaggaattcatggcaagatggagtatatggaacaaactgtccaattccaccagggcagaactttactta 559  Q
    ||||| |||||||| |||||||| |||||||| | ||| ||||||||||| || || || ||| ||||||| |||||    
T  55295338 cagcacaggaggaactcatggcaggatggagtttctggcacaaactgtccgatcccgcctgggaagaacttcactta 55295414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 71; Significance: 8e-32; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 359 - 437
Target Start/End: Original strand, 2744025 - 2744103
Alignment:
Q  359 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  2744025 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaa 2744103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 356 - 437
Target Start/End: Complemental strand, 4125076 - 4124995
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||    
T  4125076 tgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgatttacaccaaaaaa 4124995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 356 - 437
Target Start/End: Complemental strand, 7839305 - 7839224
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||| || ||||||    
T  7839305 tgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccgggttatacaaaaaaa 7839224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 354 - 437
Target Start/End: Complemental strand, 19715780 - 19715696
Alignment:
Q  354 cttgccgtccatttgggtcccacaatgctcgaggg-attagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||||| ||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||| ||||||    
T  19715780 cttgccgcccatttgggtcccacaatgctcgaggggattagtctccgcagttgcgcgcggagaatacctggtttacacaaaaaaa 19715696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 356 - 437
Target Start/End: Complemental strand, 13468797 - 13468716
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||| ||||||| |||||||||||||||| ||||||||||||||||||| || ||||||||||| |||||||||| |||||    
T  13468797 tgccgcccatttgagtcccacaatgctcgaaggattagtctccgcagttgcgcacggaggatacccggtttacacccaaaaa 13468716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 356 - 437
Target Start/End: Original strand, 30936093 - 30936174
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||| |||||||||||| |||||| |||||||||||||||||||||||| ||||||| | |||| |||||| |||||||||    
T  30936093 tgccgcccatttgggtccgacaatgttcgagggattagtctccgcagttgcgcgcggatgttacccggtttataccaaaaaa 30936174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 370 - 431
Target Start/End: Original strand, 39086855 - 39086916
Alignment:
Q  370 gtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacacc 431  Q
    ||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||    
T  39086855 gtcccacaatgctcgagggattagtctccgcagttgcacgcggaggatacctggtttacacc 39086916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 362 - 416
Target Start/End: Complemental strand, 12958131 - 12958077
Alignment:
Q  362 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggagga 416  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||||||||||    
T  12958131 ccatttgggtcccacaatgctcgagggattagtctccgcagtagcgcgcggagga 12958077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 362 - 437
Target Start/End: Original strand, 8521793 - 8521867
Alignment:
Q  362 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||||| ||||||||||||||||||||||||| ||| |||||| ||||||| |||||| | ||||||||||||||    
T  8521793 ccatttgagtcccacaatgctcgagggattagtatcc-cagttgcgcgcggaagatacccgatttacaccaaaaaa 8521867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 356 - 397
Target Start/End: Complemental strand, 30056053 - 30056012
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctc 397  Q
    |||||||||||||||| |||||||||||||||||||||||||    
T  30056053 tgccgtccatttgggttccacaatgctcgagggattagtctc 30056012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 355 - 420
Target Start/End: Original strand, 40320184 - 40320249
Alignment:
Q  355 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 420  Q
    |||||||| |||||| |||||| ||||||||| |||||||||| | |||||| |||||||||||||    
T  40320184 ttgccgtctatttggatcccacgatgctcgagagattagtctctgtagttgtacgcggaggatacc 40320249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 358 - 429
Target Start/End: Complemental strand, 13005728 - 13005657
Alignment:
Q  358 ccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 429  Q
    |||||||||| |||||||||| |||| || ||| ||||||||||||| |||||||| ||||||  |||||||    
T  13005728 ccgtccatttaggtcccacaaggctcaagagatcagtctccgcagttctgcgcggaagatacctagtttaca 13005657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 362 - 405
Target Start/End: Complemental strand, 36994546 - 36994503
Alignment:
Q  362 ccatttgggtcccacaatgctcgagggattagtctccgcagttg 405  Q
    ||||||||||||||||| |||||||||||||||||| |||||||    
T  36994546 ccatttgggtcccacaaggctcgagggattagtctctgcagttg 36994503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 354 - 401
Target Start/End: Original strand, 24988586 - 24988633
Alignment:
Q  354 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgca 401  Q
    |||||||  |||||| |||||||||| |||||||||||||||||||||    
T  24988586 cttgccgctcatttgagtcccacaatactcgagggattagtctccgca 24988633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 15683018 - 15683059
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctc 397  Q
    ||||| |||||| |||||||||||||||||||||||| ||||    
T  15683018 tgccgcccatttaggtcccacaatgctcgagggattaatctc 15683059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 8e-29; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 356 - 437
Target Start/End: Original strand, 29059894 - 29059975
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||| ||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  29059894 tgccgcccatttgggtcccacaatgcttgagggattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaa 29059975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 356 - 437
Target Start/End: Original strand, 31492192 - 31492273
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||| |||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  31492192 tgccgcccatttaggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaa 31492273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 362 - 427
Target Start/End: Complemental strand, 21747086 - 21747021
Alignment:
Q  362 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 427  Q
    |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||    
T  21747086 ccatttgggtcccacaatcctcgagggattagtcttcgcagttgtgcgcggaggatacctggttta 21747021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 364 - 444
Target Start/End: Complemental strand, 37339777 - 37339697
Alignment:
Q  364 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaagactaat 444  Q
    |||||||||||| ||||||||||||||||||||||||||||| || ||||||||||| | |||| ||||||||| ||||||    
T  37339777 atttgggtcccataatgctcgagggattagtctccgcagttgcgcacggaggatacccgatttataccaaaaaatactaat 37339697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 364 - 437
Target Start/End: Original strand, 28665187 - 28665260
Alignment:
Q  364 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    |||| |||||||||||||||||||||||||||||||||||||  |||||||||||||  |||||||| ||||||    
T  28665187 attttggtcccacaatgctcgagggattagtctccgcagttgcacgcggaggatacccagtttacacaaaaaaa 28665260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 354 - 437
Target Start/End: Complemental strand, 19477303 - 19477223
Alignment:
Q  354 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||||| ||||||||||||||||||||| ||||||||||||||||||||  ||||||||||||| | |||||||||| |||||    
T  19477303 cttgccggccatttgggtcccacaatgct-gagggattagtctccgcagt--tgcgcggaggatagctggtttacacccaaaaa 19477223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 354 - 437
Target Start/End: Complemental strand, 11486798 - 11486715
Alignment:
Q  354 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||||| |||||||||| ||||||||||| || ||||||||||  |||||| |||||||||||||| ||||||||| ||||||    
T  11486798 cttgccgcccatttgggttccacaatgctcaagagattagtctctacagttgcgcgcggaggatacccggtttacacaaaaaaa 11486715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 362 - 436
Target Start/End: Original strand, 31776513 - 31776587
Alignment:
Q  362 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaa 436  Q
    |||||||||||||||||| |||||||||||| ||| |||||||| | |||||||||||| |||||| ||||||||    
T  31776513 ccatttgggtcccacaatactcgagggattaatcttcgcagttgcgggcggaggatacctggtttataccaaaaa 31776587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 359 - 436
Target Start/End: Original strand, 45778956 - 45779033
Alignment:
Q  359 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaa 436  Q
    ||||| |||| ||| |||||| ||||||||||||||||||||||||| |   |||||||||| |||||||||||||||    
T  45778956 cgtccgtttgagtctcacaatactcgagggattagtctccgcagttgcgaatggaggatacctggtttacaccaaaaa 45779033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 354 - 430
Target Start/End: Original strand, 20207584 - 20207660
Alignment:
Q  354 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacac 430  Q
    |||||||  ||||||| ||| ||||||||||||||||||||||||||||||| || | ||||||||  |||||||||    
T  20207584 cttgccgcgcatttggatcctacaatgctcgagggattagtctccgcagttgcgcacagaggatactcggtttacac 20207660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 354 - 437
Target Start/End: Original strand, 33299166 - 33299249
Alignment:
Q  354 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    |||||| ||||||||| | ||||||||||  | |||||||||||||||||| |||| |||| ||||| ||||||||| ||||||    
T  33299166 cttgccatccatttggattccacaatgcttaatggattagtctccgcagttatgcgtggagaatacccggtttacacaaaaaaa 33299249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 362 - 427
Target Start/End: Original strand, 35707941 - 35708006
Alignment:
Q  362 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 427  Q
    |||||| | ||| ||||||||||||||||||||||| ||||||| ||| |||||||||| ||||||    
T  35707941 ccatttagatcctacaatgctcgagggattagtctctgcagttgcgcgtggaggatacccggttta 35708006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 356 - 437
Target Start/End: Original strand, 28537479 - 28537556
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||| ||||||||||||    ||||| ||||||||||||||||||||||  |||| |||||||| |||||| |||||||||    
T  28537479 tgccgcccatttgggtcc----atgcttgagggattagtctccgcagttgcacgcgaaggatacccggtttataccaaaaaa 28537556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 356 - 394
Target Start/End: Original strand, 14545032 - 14545070
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagt 394  Q
    |||||||||||||||||||||||||||||| ||||||||    
T  14545032 tgccgtccatttgggtcccacaatgctcgatggattagt 14545070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 354 - 420
Target Start/End: Original strand, 24172296 - 24172362
Alignment:
Q  354 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 420  Q
    ||||||| ||| |||| ||||||||||||||| ||||||||||  ||||||| |||||||| |||||    
T  24172296 cttgccgcccacttggatcccacaatgctcgaaggattagtctatgcagttgcgcgcggagtatacc 24172362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 355 - 405
Target Start/End: Complemental strand, 29428845 - 29428795
Alignment:
Q  355 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttg 405  Q
    |||||| |||||||| |||||||||| |||||||||||||||| |||||||    
T  29428845 ttgccgaccatttggatcccacaatgttcgagggattagtctctgcagttg 29428795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 354 - 437
Target Start/End: Original strand, 32470003 - 32470088
Alignment:
Q  354 cttgccgtccatttgggtcccacaat--gctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||||||||||||||||| ||||||  ||||||| ||||||| | ||||||||  ||||||||||| | |||||| ||| |||||    
T  32470003 cttgccgtccatttgggtctcacaatatgctcgagagattagtgttcgcagttgcacgcggaggatatctggtttatacccaaaaa 32470088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 362 - 439
Target Start/End: Complemental strand, 25421286 - 25421210
Alignment:
Q  362 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaaga 439  Q
    ||||||||||||||||| |||| |||||||||| |  ||||||||  | ||||||||||  |||||||||||||||||    
T  25421286 ccatttgggtcccacaaagctcaagggattagtgtttgcagttgt-agtggaggatacccagtttacaccaaaaaaga 25421210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 375 - 428
Target Start/End: Complemental strand, 36821113 - 36821060
Alignment:
Q  375 acaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttac 428  Q
    ||||||||||||||||||||||| ||||||| |||| ||||||||  |||||||    
T  36821113 acaatgctcgagggattagtctctgcagttgcgcgcagaggatacttggtttac 36821060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 361 - 429
Target Start/End: Original strand, 3231313 - 3231381
Alignment:
Q  361 tccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 429  Q
    ||||||| |||||||||||| ||||| |||||| |||  ||||||| ||||||||||||| | ||||||    
T  3231313 tccatttaggtcccacaatgttcgagagattagactcaccagttgtacgcggaggatacccgatttaca 3231381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 359 - 417
Target Start/End: Complemental strand, 28828814 - 28828756
Alignment:
Q  359 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggat 417  Q
    |||||||||||||| ||||| |||| | |||||||||| ||||||||  ||||||||||    
T  28828814 cgtccatttgggtctcacaaggctcaatggattagtctgcgcagttgctcgcggaggat 28828756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 362 - 420
Target Start/End: Complemental strand, 42741854 - 42741797
Alignment:
Q  362 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 420  Q
    |||||||||||| | ||| |||||||||||| |||| ||||||| ||||||||||||||    
T  42741854 ccatttgggtcc-ataatactcgagggattaatctctgcagttgcgcgcggaggatacc 42741797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 363 - 437
Target Start/End: Original strand, 1424669 - 1424745
Alignment:
Q  363 catttgggtcccacaatgctcgagggattagtctccgcagttgtgcg--cggaggataccgggtttacaccaaaaaa 437  Q
    ||||||||||||||||  || ||| |||||||||||||||||| |||  || |||| ||| | ||||||||||||||    
T  1424669 catttgggtcccacaagacttgagagattagtctccgcagttgcgcgcacgaaggacacccgatttacaccaaaaaa 1424745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 380 - 437
Target Start/End: Complemental strand, 49118277 - 49118220
Alignment:
Q  380 gctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    |||||||||||||||||| |||||| ||||| | || |||| ||||||||| ||||||    
T  49118277 gctcgagggattagtctctgcagttttgcgcagtggttacccggtttacacaaaaaaa 49118220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 356 - 392
Target Start/End: Complemental strand, 13254153 - 13254117
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggatta 392  Q
    ||||| |||||| ||||||||||||||||||||||||    
T  13254153 tgccgcccatttaggtcccacaatgctcgagggatta 13254117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 66; Significance: 8e-29; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 356 - 437
Target Start/End: Complemental strand, 5123550 - 5123469
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||||||||||    
T  5123550 tgccgcccatttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggataccctgtttacaccaaaaaa 5123469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 356 - 437
Target Start/End: Original strand, 10592016 - 10592097
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||| ||||||| |||||||||||||||||||||||||||| ||||||| |||||||||||||| | ||||||||||||||    
T  10592016 tgccgcccatttgagtcccacaatgctcgagggattagtctctgcagttgcgcgcggaggatacccgatttacaccaaaaaa 10592097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 364 - 437
Target Start/End: Complemental strand, 22188042 - 22187969
Alignment:
Q  364 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    |||||||||||||||| || |||||||||||||||||||||| |||||||||||||| || |||||||||||||    
T  22188042 atttgggtcccacaatactagagggattagtctccgcagttgcgcgcggaggatacccggcttacaccaaaaaa 22187969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 362 - 437
Target Start/End: Original strand, 31113429 - 31113504
Alignment:
Q  362 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    |||||||| ||||||||| ||||||||||||||||||||||||| ||||| |||||||| | ||||||| ||||||    
T  31113429 ccatttggatcccacaatactcgagggattagtctccgcagttgcgcgcgaaggatacccgatttacacaaaaaaa 31113504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 354 - 437
Target Start/End: Original strand, 25983752 - 25983835
Alignment:
Q  354 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||||| ||||||| |||||| |||| ||||| ||||||||||||||||||  | ||||||||||| |||||||||| |||||    
T  25983752 cttgccgcccatttgagtcccataatgttcgagtgattagtctccgcagttgcacacggaggatacccggtttacacccaaaaa 25983835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 356 - 427
Target Start/End: Complemental strand, 30785038 - 30784967
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggttta 427  Q
    |||| ||||||| |||| ||||||| || ||||||||||||||||||||| |||||||||||||| ||||||    
T  30785038 tgccatccatttaggtctcacaatgttcaagggattagtctccgcagttgcgcgcggaggatacctggttta 30784967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 359 - 437
Target Start/End: Original strand, 29553631 - 29553709
Alignment:
Q  359 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||||||||||||||| ||||||| || |||||||||| ||||||||||| ||||||||||  | ||||| |||||||    
T  29553631 cgtccatttgggtcccagaatgctcaagagattagtctctgcagttgtgcgtggaggatacccagattacaacaaaaaa 29553709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 355 - 404
Target Start/End: Original strand, 36212984 - 36213033
Alignment:
Q  355 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagtt 404  Q
    |||||| |||||| ||||||||||||||||||||||| ||||||||||||    
T  36212984 ttgccgcccatttaggtcccacaatgctcgagggattggtctccgcagtt 36213033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 355 - 433
Target Start/End: Complemental strand, 373817 - 373739
Alignment:
Q  355 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaa 433  Q
    |||||||| |||||||||  |||||| || |||||||| |||||||||||| || |||||||||||   ||||||||||    
T  373817 ttgccgtctatttgggtcatacaatgttcaagggattaatctccgcagttgcgcacggaggatacccaatttacaccaa 373739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 495 - 542
Target Start/End: Original strand, 6796801 - 6796848
Alignment:
Q  495 aattcatggcaagatggagtatatggaacaaactgtccaattccacca 542  Q
    |||||||||||||||||||||   |||||||||||||| |||||||||    
T  6796801 aattcatggcaagatggagtactgggaacaaactgtcctattccacca 6796848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 8e-29; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 364 - 437
Target Start/End: Original strand, 8757441 - 8757514
Alignment:
Q  364 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||    
T  8757441 atttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaa 8757514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 356 - 437
Target Start/End: Original strand, 20861337 - 20861418
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||| |||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||||||    
T  20861337 tgccgcccatttgggttccataatgctcgagggattagtctccgcagttgtgcgcggaggatacccagtttataccaaaaaa 20861418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 356 - 437
Target Start/End: Original strand, 27763810 - 27763891
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| | ||||||||| ||||||    
T  27763810 tgccgtccatttgagtcccacaatgctcgagggattagtctccgcagttgcgcgcagaggatatccggtttacacaaaaaaa 27763891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 356 - 437
Target Start/End: Complemental strand, 30996017 - 30995936
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||| |||||    
T  30996017 tgccgcccatctgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatatctggtttacacctaaaaa 30995936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 354 - 437
Target Start/End: Original strand, 25224786 - 25224869
Alignment:
Q  354 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||||| |||||| ||||||||||||||| |||||||||||||||||||||  ||||||||||||| |||||||||| |||||    
T  25224786 cttgccgcccatttaggtcccacaatgctcaagggattagtctccgcagttgcacgcggaggatacccggtttacacccaaaaa 25224869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 358 - 437
Target Start/End: Original strand, 1642697 - 1642776
Alignment:
Q  358 ccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    |||||||||||||||||||||| || ||||||||||| |||||||||| |||||||||||| | | ||||||||||||||    
T  1642697 ccgtccatttgggtcccacaatacttgagggattagtttccgcagttgcgcgcggaggatatccgatttacaccaaaaaa 1642776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 354 - 437
Target Start/End: Complemental strand, 48204365 - 48204282
Alignment:
Q  354 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    |||| ||||||||||||| ||||||||||| |||||||||| |||||||||| |||||||||||||| | |||||||| |||||    
T  48204365 cttgtcgtccatttgggttccacaatgctcaagggattagtttccgcagttgcgcgcggaggatacccgatttacacccaaaaa 48204282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 362 - 437
Target Start/End: Original strand, 55123192 - 55123267
Alignment:
Q  362 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||||||||| ||||||||||||||||||||||| |||||||| |||||||||||||| | |||| |||||||||    
T  55123192 ccatttgggtctcacaatgctcgagggattagtcttcgcagttgcgcgcggaggatacctgatttataccaaaaaa 55123267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 354 - 437
Target Start/End: Original strand, 38331215 - 38331299
Alignment:
Q  354 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttac-accaaaaaa 437  Q
    ||||||| ||||||||||||||||||| | ||||||||||||||||||||||  ||||||||||||| | ||||| |||||||||    
T  38331215 cttgccgcccatttgggtcccacaatgtttgagggattagtctccgcagttgcacgcggaggatacccgatttacaaccaaaaaa 38331299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 354 - 436
Target Start/End: Original strand, 22288322 - 22288404
Alignment:
Q  354 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaa 436  Q
    |||| |||||||||| ||  |||||| ||| ||| ||||||||| |||||||||||||||||||||| ||||||||| |||||    
T  22288322 cttgtcgtccatttgagttacacaatactcaaggaattagtctctgcagttgtgcgcggaggatacccggtttacacaaaaaa 22288404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 375 - 431
Target Start/End: Complemental strand, 40318482 - 40318426
Alignment:
Q  375 acaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacacc 431  Q
    |||||| |||||||||||||||||||||||| |||||||||||||| | ||||||||    
T  40318482 acaatgttcgagggattagtctccgcagttgcgcgcggaggatacccgttttacacc 40318426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 355 - 437
Target Start/End: Complemental strand, 44941317 - 44941236
Alignment:
Q  355 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    |||||| |||||||| |||||  |||||||||| ||||||||||||||||| |||||||||||| |  ||||| |||||||||    
T  44941317 ttgccgcccatttggatcccattatgctcgagg-attagtctccgcagttgcgcgcggaggatatccagtttataccaaaaaa 44941236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 355 - 398
Target Start/End: Original strand, 15446084 - 15446127
Alignment:
Q  355 ttgccgtccatttgggtcccacaatgctcgagggattagtctcc 398  Q
    |||||||||||||||||| |||||||||||| ||||||||||||    
T  15446084 ttgccgtccatttgggtctcacaatgctcgacggattagtctcc 15446127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 389 - 436
Target Start/End: Original strand, 22288643 - 22288690
Alignment:
Q  389 attagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaa 436  Q
    ||||||||| |||||||||||||||||||||| ||||||||| |||||    
T  22288643 attagtctctgcagttgtgcgcggaggatacccggtttacacaaaaaa 22288690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 354 - 437
Target Start/End: Original strand, 40294699 - 40294782
Alignment:
Q  354 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    |||||||  ||||||  ||||||||| ||||| ||||||||||||||||||| || |  |||||||| | ||||||||||||||    
T  40294699 cttgccgctcatttgaatcccacaatactcgaaggattagtctccgcagttgcgcacaaaggatacccgatttacaccaaaaaa 40294782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 355 - 437
Target Start/End: Original strand, 46725513 - 46725594
Alignment:
Q  355 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    |||| |||||| ||||||| |||||||| ||||||||||||||  |||||  |||||||||||||  |||||||||| |||||    
T  46725513 ttgctgtccatctgggtcc-acaatgcttgagggattagtctcttcagttacgcgcggaggatacttggtttacacccaaaaa 46725594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 355 - 396
Target Start/End: Original strand, 15283159 - 15283200
Alignment:
Q  355 ttgccgtccatttgggtcccacaatgctcgagggattagtct 396  Q
    |||||| ||||||||||||||||||||||||| |||||||||    
T  15283159 ttgccgcccatttgggtcccacaatgctcgagagattagtct 15283200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 363 - 420
Target Start/End: Original strand, 39950308 - 39950365
Alignment:
Q  363 catttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 420  Q
    ||||||| ||| ||||||||||| |||||||||||||||||||   ||||||||||||    
T  39950308 catttggatccgacaatgctcgaaggattagtctccgcagttgcatgcggaggatacc 39950365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 362 - 437
Target Start/End: Original strand, 25739182 - 25739258
Alignment:
Q  362 ccatttgggtcccacaatgctcgagggattagtctccgca-gttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    |||||||||||||| ||  |||||   ||||||||||||| |||| | |||||||||||| ||||||||||||||||    
T  25739182 ccatttgggtcccataagactcgataaattagtctccgcaagttgcgtgcggaggatacccggtttacaccaaaaaa 25739258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 354 - 420
Target Start/End: Complemental strand, 48211014 - 48210948
Alignment:
Q  354 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 420  Q
    ||||||||| |||| ||||||||||| ||||||| |||  ||||||||||||  |||||| ||||||    
T  48211014 cttgccgtctatttaggtcccacaatactcgaggaattgatctccgcagttgcacgcggaagatacc 48210948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 377 - 437
Target Start/End: Complemental strand, 43621342 - 43621282
Alignment:
Q  377 aatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||||||||||||||||||| | ||||| |||| ||||||||| | || ||| |||||||    
T  43621342 aatgctcgagggattagtctctgtagttgcgcgcagaggatacccgattcacaacaaaaaa 43621282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 63; Significance: 5e-27; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 356 - 438
Target Start/End: Original strand, 26420 - 26502
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaag 438  Q
    ||||| ||||||||||||||||||| ||||| |||||||||||||||||| |||||||||||||| |||||||||||||||||    
T  26420 tgccgcccatttgggtcccacaatgttcgagagattagtctccgcagttgcgcgcggaggatacccggtttacaccaaaaaag 26502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 1e-24; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 363 - 437
Target Start/End: Original strand, 16756178 - 16756252
Alignment:
Q  363 catttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||  | ||||||||||||||    
T  16756178 catttgggtcccacaatgctcgagggattagtctccgcagttgcgcgcggaggatactcgatttacaccaaaaaa 16756252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 356 - 429
Target Start/End: Complemental strand, 42297494 - 42297421
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 429  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||  |||||||    
T  42297494 tgccgtccatttgggtctcacaatgctcgagggattagtctccgcagttgcgcgcggaggatacctagtttaca 42297421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 355 - 439
Target Start/End: Original strand, 15642543 - 15642628
Alignment:
Q  355 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca-ccaaaaaaga 439  Q
    |||||| ||||||||||||||||||||||||| ||||| |||||||||||| |||||||||||||| | |||||| ||||||||||    
T  15642543 ttgccgcccatttgggtcccacaatgctcgagagattattctccgcagttgcgcgcggaggatacccgatttacatccaaaaaaga 15642628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 356 - 437
Target Start/End: Original strand, 36806700 - 36806781
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||| |||||||||| ||||||||||||||||||||||||| |||||||  ||||||||||||| |||||||||| |||||    
T  36806700 tgccgcccatttgggttccacaatgctcgagggattagtctctgcagttgcacgcggaggatacccggtttacacccaaaaa 36806781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 356 - 437
Target Start/End: Original strand, 49071666 - 49071747
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    |||||| |||||||||||||||||||||||| |||||||||||||||||| | ||||| |||| | | ||||||||||||||    
T  49071666 tgccgttcatttgggtcccacaatgctcgagagattagtctccgcagttgcgtgcggaagatatccgatttacaccaaaaaa 49071747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 356 - 425
Target Start/End: Original strand, 28724761 - 28724830
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtt 425  Q
    ||||||||||||| |||| |||||| |||||||||||||||||||| ||| |||||||||||||| ||||    
T  28724761 tgccgtccatttgagtcctacaatgttcgagggattagtctccgcaattgcgcgcggaggatacccggtt 28724830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 357 - 420
Target Start/End: Complemental strand, 9781040 - 9780977
Alignment:
Q  357 gccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 420  Q
    |||| ||||||||||||||||||||||||||||||||| |||| ||||| |||||||| |||||    
T  9781040 gccgcccatttgggtcccacaatgctcgagggattagtatccgtagttgggcgcggagaatacc 9780977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 372 - 430
Target Start/End: Complemental strand, 18428178 - 18428120
Alignment:
Q  372 cccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacac 430  Q
    |||||||||||||||||||||||||| ||||||| |||||||||||||| | |||||||    
T  18428178 cccacaatgctcgagggattagtctctgcagttgcgcgcggaggatacccgatttacac 18428120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 471 - 636
Target Start/End: Complemental strand, 8571971 - 8571806
Alignment:
Q  471 aggaatggagtgcagcagaggaggaattcatggcaagatggagtatatggaacaaactgtccaattccaccagggcagaactttacttatgttcttcaag 570  Q
    ||||||||||| |||||||| ||||| ||||   |||||||||| | ||||||||  ||||| |||||||| ||  ||||||| || ||  | |||||||    
T  8571971 aggaatggagtccagcagagaaggaactcatacgaagatggagtgtttggaacaacatgtcccattccacctggaaagaacttcacatacatacttcaag 8571872  T
Q  571 taaaagatcagattggtagctacttttactttccctcccttgcattacacaaggccgcaggtggtt 636  Q
    |||||||||| |||||||| | || ||| || || || |||||||| ||||| || || |||||||    
T  8571871 taaaagatcaaattggtagtttctattatttcccatctcttgcattccacaaagctgctggtggtt 8571806  T

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Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 354 - 431
Target Start/End: Original strand, 46864178 - 46864255
Alignment:
Q  354 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacacc 431  Q
    ||||||||||||||||||  ||||||| |||||||||||||||| ||||||| ||||  |||||||| | ||||||||    
T  46864178 cttgccgtccatttgggtttcacaatgttcgagggattagtctctgcagttgcgcgcaaaggatacctgatttacacc 46864255  T

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Target: chr1; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 362 - 437
Target Start/End: Original strand, 22022215 - 22022290
Alignment:
Q  362 ccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||||||||||||||||  ||||||||||||||||||||||||  || ||||||||||  || ||||| ||||||    
T  22022215 ccatttgggtcccacaatattcgagggattagtctccgcagttgcacgtggaggatacccagtatacacaaaaaaa 22022290  T

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Target: chr1; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 354 - 437
Target Start/End: Original strand, 44913196 - 44913279
Alignment:
Q  354 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||||| |||| |||||||||||||||||||| |||||||||| ||||||  |||| |||||||||   ||||||| ||||||    
T  44913196 cttgccgcccatctgggtcccacaatgctcgagagattagtctctgcagttacgcgcagaggatacctaatttacacaaaaaaa 44913279  T

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Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 356 - 397
Target Start/End: Original strand, 12035639 - 12035680
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctc 397  Q
    ||||| ||||||||||||||||||||||||||||||||||||    
T  12035639 tgccgcccatttgggtcccacaatgctcgagggattagtctc 12035680  T

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Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 381 - 421
Target Start/End: Complemental strand, 7242834 - 7242794
Alignment:
Q  381 ctcgagggattagtctccgcagttgtgcgcggaggataccg 421  Q
    ||||||||||||||||||||||||| ||||||| |||||||    
T  7242834 ctcgagggattagtctccgcagttgcgcgcggaagataccg 7242794  T

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Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 369 - 429
Target Start/End: Original strand, 32534184 - 32534244
Alignment:
Q  369 ggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttaca 429  Q
    |||| ||||||||||||| | |||||||||||| ||| |||| ||||||||| ||||||||    
T  32534184 ggtctcacaatgctcgagaggttagtctccgcaattgcgcgcagaggatacctggtttaca 32534244  T

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Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 363 - 402
Target Start/End: Complemental strand, 6607739 - 6607700
Alignment:
Q  363 catttgggtcccacaatgctcgagggattagtctccgcag 402  Q
    ||||| |||| |||||||||||||||||||||||||||||    
T  6607739 catttaggtctcacaatgctcgagggattagtctccgcag 6607700  T

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Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 362 - 405
Target Start/End: Original strand, 10367599 - 10367642
Alignment:
Q  362 ccatttgggtcccacaatgctcgagggattagtctccgcagttg 405  Q
    |||||||||||| ||||||||||| |||||| ||||||||||||    
T  10367599 ccatttgggtccaacaatgctcgaaggattaatctccgcagttg 10367642  T

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Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 378 - 409
Target Start/End: Original strand, 21774671 - 21774702
Alignment:
Q  378 atgctcgagggattagtctccgcagttgtgcg 409  Q
    ||||||||||||||||||||||||||||||||    
T  21774671 atgctcgagggattagtctccgcagttgtgcg 21774702  T

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Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 354 - 420
Target Start/End: Original strand, 10750684 - 10750750
Alignment:
Q  354 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 420  Q
    ||||||| |||||||| || ||||||| |||||||||||||||   |||||| |||| |||||||||    
T  10750684 cttgccgcccatttggatcgcacaatgttcgagggattagtctttacagttgcgcgcagaggatacc 10750750  T

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Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 364 - 437
Target Start/End: Complemental strand, 39547408 - 39547335
Alignment:
Q  364 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    |||| |||| ||||||| |||| |||||| |||||||||||| |||| ||||||  | |||||||||| |||||    
T  39547408 atttaggtctcacaatgttcgacggattaatctccgcagttgcgcgcagaggatttccggtttacacccaaaaa 39547335  T

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Target: chr6 (Bit Score: 53; Significance: 5e-21; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 357 - 437
Target Start/End: Complemental strand, 12836948 - 12836868
Alignment:
Q  357 gccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    |||| ||||||||||||||||||||| ||||||||||||||| |||||| |||||||||||||| |||||| ||| |||||    
T  12836948 gccgcccatttgggtcccacaatgcttgagggattagtctccccagttgcgcgcggaggatacccggtttatacccaaaaa 12836868  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 356 - 434
Target Start/End: Original strand, 12411237 - 12411315
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaa 434  Q
    ||||| ||||||  ||||||||||||| ||||||||||||||| |||||| |||||| ||||||| |||||| ||||||    
T  12411237 tgccgcccatttaagtcccacaatgcttgagggattagtctccacagttgcgcgcgggggatacccggtttataccaaa 12411315  T

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Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 363 - 437
Target Start/End: Original strand, 21910301 - 21910374
Alignment:
Q  363 catttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||| ||||||||||| ||| |||||||||||||||||||||  ||||||||||||| |||||||||| |||||    
T  21910301 catttaggtcccacaatactc-agggattagtctccgcagttgcacgcggaggatacctggtttacacccaaaaa 21910374  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 359 - 420
Target Start/End: Original strand, 28099335 - 28099396
Alignment:
Q  359 cgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 420  Q
    |||||||||| || ||| ||||||||||||||||||||||||||||| | ||||||||||||    
T  28099335 cgtccatttgagttccataatgctcgagggattagtctccgcagttgcgagcggaggatacc 28099396  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 358 - 418
Target Start/End: Original strand, 9536858 - 9536918
Alignment:
Q  358 ccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggata 418  Q
    |||||||||| | | ||||||||||||||||||||||||||||||||| || |||||||||    
T  9536858 ccgtccatttagattccacaatgctcgagggattagtctccgcagttgcgctcggaggata 9536918  T

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Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 21028895 - 21028843
Alignment:
Q  355 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtg 407  Q
    |||||| |||||||||| |||||| |||| |||||||||||||||||||||||    
T  21028895 ttgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttgtg 21028843  T

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Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 355 - 407
Target Start/End: Complemental strand, 21029032 - 21028980
Alignment:
Q  355 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtg 407  Q
    |||||| |||||||||| |||||| |||| |||||||||||||||||||||||    
T  21029032 ttgccgcccatttgggtgccacaaggctcaagggattagtctccgcagttgtg 21028980  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 356 - 394
Target Start/End: Original strand, 423744 - 423782
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagt 394  Q
    ||||||||||||| |||||||||||||||||||||||||    
T  423744 tgccgtccatttgagtcccacaatgctcgagggattagt 423782  T

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Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 356 - 418
Target Start/End: Original strand, 31412211 - 31412273
Alignment:
Q  356 tgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggata 418  Q
    ||||| |||||||||| ||||||||||||||  |||||||||| |||||| || |||||||||    
T  31412211 tgccgcccatttgggttccacaatgctcgagaaattagtctccacagttgcgcacggaggata 31412273  T

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Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 364 - 419
Target Start/End: Original strand, 17177235 - 17177290
Alignment:
Q  364 atttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatac 419  Q
    |||||| || |||||| |||||||||||| |||||| | |||||||||||||||||    
T  17177235 atttggatctcacaatactcgagggattaatctccgtaattgtgcgcggaggatac 17177290  T

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Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 355 - 437
Target Start/End: Original strand, 278479 - 278561
Alignment:
Q  355 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    ||||||||||||| ||||||||||  ||| |||||||||||  | ||||||  | ||||||||||| | ||||| ||||||||    
T  278479 ttgccgtccatttaggtcccacaaaactcaagggattagtcgtcacagttgcacacggaggatacccgatttaccccaaaaaa 278561  T

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Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 355 - 405
Target Start/End: Original strand, 28933226 - 28933276
Alignment:
Q  355 ttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttg 405  Q
    |||||| |||||||||| |||||||||||||| || |||| ||||||||||    
T  28933226 ttgccgcccatttgggttccacaatgctcgagtgaatagtatccgcagttg 28933276  T

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Target: scaffold0013 (Bit Score: 51; Significance: 7e-20; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 363 - 437
Target Start/End: Complemental strand, 29197 - 29123
Alignment:
Q  363 catttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggataccgggtttacaccaaaaaa 437  Q
    |||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||| | ||||||| ||||||    
T  29197 catttgggtcccacaatgctcgtgggattagtctccacagttgcgcgcggaggatacccgatttacacaaaaaaa 29123  T

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Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 354 - 420
Target Start/End: Complemental strand, 27279 - 27213
Alignment:
Q  354 cttgccgtccatttgggtcccacaatgctcgagggattagtctccgcagttgtgcgcggaggatacc 420  Q
    ||||||| |||||||| || ||| ||||||||||||||||||| |||||||| ||||||||||||||    
T  27279 cttgccgcccatttggatctcacgatgctcgagggattagtcttcgcagttgcgcgcggaggatacc 27213  T

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Target: scaffold0071 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 355 - 398
Target Start/End: Complemental strand, 16108 - 16065
Alignment:
Q  355 ttgccgtccatttgggtcccacaatgctcgagggattagtctcc 398  Q
    |||||||||||||||||| |||||||||||| ||||||||||||    
T  16108 ttgccgtccatttgggtctcacaatgctcgacggattagtctcc 16065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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