View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF14926_low_2 (Length: 463)
Name: NF14926_low_2
Description: NF14926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF14926_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 136; Significance: 9e-71; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 19 - 226
Target Start/End: Complemental strand, 44842122 - 44841915
Alignment:
| Q |
19 |
tcatttaaaggttagaaatccgaaggagtttttgggtttattagactttagataatggacatctcagtgttagagtttgagtttcacacatgggccaaca |
118 |
Q |
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| T |
44842122 |
tcatttaaaggttagaaatccgaaggagtttttgggtttattagactttagataatggacatctcagtgttagagtttgagtttcacacatgggccaaca |
44842023 |
T |
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| Q |
119 |
atttcctaatggctgataaagtaataaatnnnnnnnnnnnnnnnnnnnnnnnntgcaattgattgcatgcatcacagtagttatttgatgaatcaagaga |
218 |
Q |
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| T |
44842022 |
atttcctaatggctgataaagtaataaataaaaactaaaaaaagaaaaagaaatgcaattgattgcatgcatcacagtagttatttgatgaatcaagaga |
44841923 |
T |
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| Q |
219 |
tggttgag |
226 |
Q |
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| T |
44841922 |
tggttgag |
44841915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 290 - 449
Target Start/End: Complemental strand, 44841849 - 44841668
Alignment:
| Q |
290 |
ggaaatagtttcatcatcaaagtagtaattgtcatgattccttggaaatgtttgttgacattaacttgagagatgaatatg------------------- |
370 |
Q |
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| T |
44841849 |
ggaaatagtttcatcatcaaagtagtaattgtcatgattccttggaaatgtttgttgacattaacttgagagatgaatatgatttcctgcgtgtgtacct |
44841750 |
T |
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| Q |
371 |
---aatgtcattatgttgtactttgctcttcttttcctatttgcgatgattgtcaatgtttcttacctcatgtatatctgtg |
449 |
Q |
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| T |
44841749 |
gtcaatgtcattatgttgtactttgctcttcttttcctatttgcgatgattgtcaatgtttcttacctcatgtatatctgtg |
44841668 |
T |
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